mRNA_H-akashiwo_Contig924.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig924.4.1
Unique NamemRNA_H-akashiwo_Contig924.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig924.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig924contigH-akashiwo_Contig924:320633..321236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size604
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388044.7114992-UTR-H-akashiwo_Contig924:320632..3208871681388044.7114992-UTR-H-akashiwo_Contig924:320632..320887Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig924 320633..320887 +
1681388044.7294655-UTR-H-akashiwo_Contig924:321208..3212361681388044.7294655-UTR-H-akashiwo_Contig924:321208..321236Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig924 321209..321236 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388044.7206435-CDS-H-akashiwo_Contig924:320887..3212081681388044.7206435-CDS-H-akashiwo_Contig924:320887..321208Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig924 320888..321208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig924.4.1prot_H-akashiwo_Contig924.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig924 320888..321208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig924.4.1

>prot_H-akashiwo_Contig924.4.1 ID=prot_H-akashiwo_Contig924.4.1|Name=mRNA_H-akashiwo_Contig924.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=107bp
MRIPAQTRITMPAANWAISSCPADAKISCFGCPRLYSEWIFSPKFGNRFI
TTRAQNNCLVFMKNESADSKAMSTGVNQKGQSTKVVEICIGTKANKTVAA
SYKEVV*
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mRNA from alignment at H-akashiwo_Contig924:320633..321236+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig924.4.1 ID=mRNA_H-akashiwo_Contig924.4.1|Name=mRNA_H-akashiwo_Contig924.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=604bp|location=Sequence derived from alignment at H-akashiwo_Contig924:320633..321236+ (Heterosigma akashiwo CCMP452)
GCCCAAAACAACGGTTTTGTGTCCATGAAGAATGATCCTGCAGCTTGATA
GGCAATGAACGCACAAGTGTAGACAAAAAAGGCCAGAGTACAAAAGGGGT
AGAAGTATGCATCGGAAAAAAAGCGAACCAGACTGCAGCAGAAAGCTACA
AAGAGATAGTATAGCTGAGCCCCCTCACTGGTCAGCGTGGATATGAAGCT
GCCTATACAATCACTGGCATTCAAGCTCCCGCAGATCCAATCACTGTGAT
TATTGATGAGGATCCCAGCGCAGACAAGAATTACAATGCCTGCCGCAAAC
TGGGCCATTAGTTCTTGTCCTGCTGATGCAAAGATAAGCTGTTTTGGTTG
CCCTCGATTGTACAGCGAATGGATATTTTCTCCCAAATTTGGTAACAGGT
TCATAACAACCAGAGCCCAGAACAACTGCTTGGTGTTTATGAAGAATGAG
TCTGCAGATTCAAAGGCAATGAGCACAGGTGTAAACCAAAAAGGCCAGAG
CACAAAAGTGGTAGAAATATGCATCGGAACAAAAGCGAACAAGACTGTAG
CAGCAAGCTACAAAGAGGTAGTATAGTTGAGCCCCCTCGCTAGTCAACGT
GGAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig924:320633..321236+

>mRNA_H-akashiwo_Contig924.4.1 ID=mRNA_H-akashiwo_Contig924.4.1|Name=mRNA_H-akashiwo_Contig924.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=321bp|location=Sequence derived from alignment at H-akashiwo_Contig924:320633..321236+ (Heterosigma akashiwo CCMP452)
ATGAGGATCCCAGCGCAGACAAGAATTACAATGCCTGCCGCAAACTGGGC
CATTAGTTCTTGTCCTGCTGATGCAAAGATAAGCTGTTTTGGTTGCCCTC
GATTGTACAGCGAATGGATATTTTCTCCCAAATTTGGTAACAGGTTCATA
ACAACCAGAGCCCAGAACAACTGCTTGGTGTTTATGAAGAATGAGTCTGC
AGATTCAAAGGCAATGAGCACAGGTGTAAACCAAAAAGGCCAGAGCACAA
AAGTGGTAGAAATATGCATCGGAACAAAAGCGAACAAGACTGTAGCAGCA
AGCTACAAAGAGGTAGTATAG
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