mRNA_H-akashiwo_Contig921.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig921.5.1
Unique NamemRNA_H-akashiwo_Contig921.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: UPI0010FBB0A7 (uncharacterized protein LOC114944459 n=1 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FBB0A7)

HSP 1 Score: 113 bits (282), Expect = 5.150e-29
Identity = 58/123 (47.15%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGY 369
            W R+ DDT++IW H +E F +FL+ LN  +  I++ +  E+N QLPFLDVLV +N+DG+    VYRKPTH+DRYL+ T +H    K S I +L+YRA       SL  EEL HL +     GY
Sbjct:   32 WFRYVDDTFVIWNHGKETFPQFLDFLNYQHRSIQFIMEIEQNNQLPFLDVLVKKNDDGTLGHRVYRKPTHTDRYLHSTSHHHPAQKNSVISSLIYRALTISEPTSLN-EELEHLNQVLTKNGY 153          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: UPI000CD7B128 (uncharacterized protein LOC111868932 n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI000CD7B128)

HSP 1 Score: 115 bits (287), Expect = 4.770e-28
Identity = 58/133 (43.61%), Postives = 79/133 (59.40%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVALR 399
            W R+ DDT++IW H       FL  LN I P I++ +  E N  +PFLDVLV +  D +F+T VYRKPTH+ RYLN+  NHP   K   IR L  RA   C   + + +E++HLR+ F   GYP  F++ A +
Sbjct:   45 WFRYVDDTFVIWPHGPNTLQNFLIHLNSIRPTIQFTMETEVNNTIPFLDVLVTKT-DATFSTKVYRKPTHTGRYLNFESNHPPHIKKGLIRGLQKRAITICQDQNDQHKEISHLRREFLTNGYPPSFIDSAFK 176          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: A0A401QI04_SCYTO (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QI04_SCYTO)

HSP 1 Score: 117 bits (293), Expect = 5.110e-28
Identity = 58/134 (43.28%), Postives = 85/134 (63.43%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVALRK 402
            W R+ DDT++IW H ++   EFL  LN I+P IK+ +  E+NGQ+PFLDVLV RN +G+ + TVYRK TH+DRYL+   +H  K K   + TL +R+        L+ EEL HL++  A  GY +  ++ A+ +
Sbjct:  308 WYRYIDDTFVIWPHGRQKLEEFLGHLNSIHPNIKFTMEIEENGQIPFLDVLVKRNAEGTLSHTVYRKTTHTDRYLHAESHHHPKQKRGILHTLAHRSKTISDKQHLR-EELQHLQQALASNGYTKTEIQRAITR 440          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: A0A6J2YSK0_SITOR (uncharacterized protein LOC115889824 n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2YSK0_SITOR)

HSP 1 Score: 113 bits (283), Expect = 1.010e-27
Identity = 60/132 (45.45%), Postives = 80/132 (60.61%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVAL 396
            W R+ DDT+++W+H ++   +FL  LN  +P IK+ +  E N QL FLDVLV RN D     TVYRKPTH+DRYL+   NH    K   I TL  RA H C+   ++ EEL+HL K F   GY +  ++ AL
Sbjct:   89 WFRYVDDTFVVWKHGRDSLDDFLHHLNSQSPSIKFTMETEVNNQLAFLDVLVKRNGD-LLDHTVYRKPTHTDRYLHKLSNHHPSQKQGIIGTLANRARHICANEHIQ-EELSHLNKAFLANGYNDREIKAAL 218          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: UPI0005F425C1 (uncharacterized protein LOC105566767 n=2 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F425C1)

HSP 1 Score: 113 bits (282), Expect = 1.210e-27
Identity = 58/134 (43.28%), Postives = 82/134 (61.19%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVALRK 402
            W R+ DDT++IW H +E   +FL  +N  +P I++ +  E+N Q+PFLDVLV RNEDG+ +  VYRKPTH+DRYL+   +H    K S I +LV+RA      A+L   EL HL +T    GY    +   ++K
Sbjct:   32 WFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTMETEQNSQIPFLDVLVRRNEDGTLSHNVYRKPTHTDRYLHANSHHHPAQKNSIISSLVHRALSISEPAALN-GELNHLHRTLTRNGYSSSNINRTIKK 164          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: UPI0005F52B34 (uncharacterized protein LOC105562568 n=1 Tax=Vollenhovia emeryi TaxID=411798 RepID=UPI0005F52B34)

HSP 1 Score: 110 bits (276), Expect = 1.250e-27
Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVALRK 402
            W R+ DDT++IW H +E   +FL  +N  +P I++ +  E+N Q+PFLDVLV RNEDG+    VYRKPTH+DRYL+   +H    K S I +LV+RA      A+L   +L HL +     GY    +   ++K
Sbjct:   32 WFRYVDDTFVIWNHGRETLPQFLTFINSQHPNIQFTIEIEQNSQIPFLDVLVCRNEDGTLGHNVYRKPTHTDRYLHANSHHHPAQKNSVINSLVHRALSISEPAALD-GKLNHLHRALTRNGYSSRNINRTIQK 164          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: A0A6J1QJD7_9HYME (uncharacterized protein LOC112461499 n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1QJD7_9HYME)

HSP 1 Score: 113 bits (283), Expect = 1.530e-27
Identity = 57/123 (46.34%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGY 369
            W R+ DDT++IW H ++   +FL  LN  +P I++ +  E+N Q+PFLDVLV RN+DG+ +  VYRKPTH+DRYL+ T +H    K S I +LVYRA     + SL   EL HL +     GY
Sbjct:   32 WFRYVDDTFVIWSHGRDTLPQFLAFLNSQHPNIQFTMEVEQNSQIPFLDVLVRRNDDGTLSHQVYRKPTHTDRYLHATSHHHPSQKNSVISSLVYRALTISESTSLN-GELEHLNQALTKNGY 153          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: A0A1B6E0Y0_9HEMI (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6E0Y0_9HEMI)

HSP 1 Score: 110 bits (275), Expect = 3.390e-27
Identity = 58/134 (43.28%), Postives = 73/134 (54.48%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVALRK 402
            WLR+ DD W +W H      +FLE LN I+  IK+ +  E   QLPFLD+L  R  DGS    VYRKPTH+DRYLN + +H    K   + TL+ RA H     S K EE   LR T    GY    ++ A +K
Sbjct:   32 WLRYVDDVWAVWPHGDSTLQQFLEHLNSIHRNIKFTMEIESKKQLPFLDILTTRKADGSIGHAVYRKPTHTDRYLNSSSHHHPAQKYGILNTLINRAIHISDRDSWK-EEKHRLRITLQQNGYSLYDIDKAFKK 164          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: UPI001ED872CF (uncharacterized protein LOC124161474 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED872CF)

HSP 1 Score: 112 bits (280), Expect = 4.550e-27
Identity = 54/132 (40.91%), Postives = 82/132 (62.12%), Query Frame = 1
Query:    7 RFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVALRK 402
            R+ DDT ++W H  E    FLE +NG+NP IK+ +  E N +LPFLD+L+ R E+G+   +VYRKPTH++ YLN + +H    K   + TL +RA      A L ++E++HL+ TF   GY    ++ AL++
Sbjct:  148 RYVDDTLIVWPHGIETLPTFLEHMNGVNPSIKFTMEVENNRRLPFLDILIERKENGNIGHSVYRKPTHTELYLNASSHHHPAQKKGVLTTLFHRAKAISDDAHL-IQEISHLKSTFRKNGYNHREIQAALKR 278          
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Match: A0A6J2X6M1_SITOR (uncharacterized protein LOC115875367 n=2 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X6M1_SITOR)

HSP 1 Score: 111 bits (278), Expect = 1.090e-26
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    1 WLRFRDDTWMIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGSFTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKMEELAHLRKTFADTGYPEEFVEVAL 396
            W R+ DDT+++W+H ++   +FL  LN  +P IK+ +  E+N QL FLDVLV RN D     TVYRKPTH+DRYL+   NH    K   I TL  RA   C+   ++ EEL+HL K F   GY E+ ++ AL
Sbjct:   32 WFRYVDDTFVVWKHGRDSLDDFLHHLNTQSPSIKFTMETEENNQLAFLDVLVKRNGD-HLDHTVYRKPTHTDRYLHKLSNHHPSQKHGIIGTLANRARRICAKDHIQ-EELSHLNKAFLANGYNEKEIKAAL 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig921.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0010FBB0A75.150e-2947.15uncharacterized protein LOC114944459 n=1 Tax=Nylan... [more]
UPI000CD7B1284.770e-2843.61uncharacterized protein LOC111868932 n=1 Tax=Crypt... [more]
A0A401QI04_SCYTO5.110e-2843.28Reverse transcriptase domain-containing protein (F... [more]
A0A6J2YSK0_SITOR1.010e-2745.45uncharacterized protein LOC115889824 n=1 Tax=Sitop... [more]
UPI0005F425C11.210e-2743.28uncharacterized protein LOC105566767 n=2 Tax=Volle... [more]
UPI0005F52B341.250e-2741.79uncharacterized protein LOC105562568 n=1 Tax=Volle... [more]
A0A6J1QJD7_9HYME1.530e-2746.34uncharacterized protein LOC112461499 n=1 Tax=Temno... [more]
A0A1B6E0Y0_9HEMI3.390e-2743.28Reverse transcriptase domain-containing protein (F... [more]
UPI001ED872CF4.550e-2740.91uncharacterized protein LOC124161474 n=1 Tax=Ischn... [more]
A0A6J2X6M1_SITOR1.090e-2645.45uncharacterized protein LOC115875367 n=2 Tax=Sitop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig921contigH-akashiwo_Contig921:403184..403606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28377.ENSACAP00000021908
PFAMsRVT_1
Model size423
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.24e-22
EggNOG OGs2CN36@1|root,2QTNN@2759|Eukaryota,38FJC@33154|Opisthokonta,3BM27@33208|Metazoa,3D0HQ@33213|Bilateria,48H4M@7711|Chordata
Cds size396
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.86229-UTR-H-akashiwo_Contig921:403183..4032101681388043.86229-UTR-H-akashiwo_Contig921:403183..403210Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig921 403184..403210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.8721702-CDS-H-akashiwo_Contig921:403210..4036061681388043.8721702-CDS-H-akashiwo_Contig921:403210..403606Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig921 403211..403606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig921.5.1prot_H-akashiwo_Contig921.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig921 403211..403606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig921.5.1

>prot_H-akashiwo_Contig921.5.1 ID=prot_H-akashiwo_Contig921.5.1|Name=mRNA_H-akashiwo_Contig921.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
MIWEHSQELFAEFLEKLNGINPKIKWEVVFEKNGQLPFLDVLVVRNEDGS
FTTTVYRKPTHSDRYLNWTFNHPVKDKLSGIRTLVYRANHYCSTASLKME
ELAHLRKTFADTGYPEEFVEVALRKGPMTAEE
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mRNA from alignment at H-akashiwo_Contig921:403184..403606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig921.5.1 ID=mRNA_H-akashiwo_Contig921.5.1|Name=mRNA_H-akashiwo_Contig921.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=423bp|location=Sequence derived from alignment at H-akashiwo_Contig921:403184..403606+ (Heterosigma akashiwo CCMP452)
TGGCTCAGGTTCCGTGATGACACCTGGATGATCTGGGAGCACTCTCAGGA ACTTTTTGCCGAGTTCTTGGAGAAGCTCAATGGCATTAACCCGAAGATCA AGTGGGAGGTGGTGTTTGAGAAAAATGGGCAGTTGCCTTTTCTGGACGTG TTAGTGGTGAGAAATGAGGATGGCTCTTTTACTACCACGGTCTACCGGAA ACCCACACACTCTGACAGGTATCTCAATTGGACTTTCAACCATCCTGTGA AGGACAAACTTTCTGGTATCAGAACTTTGGTCTATCGGGCTAACCACTAC TGCTCTACGGCGAGCCTGAAGATGGAGGAGTTGGCCCATTTGAGGAAGAC TTTTGCTGACACCGGGTATCCGGAGGAGTTCGTGGAGGTAGCTTTGCGGA AGGGTCCCATGACGGCTGAGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig921:403184..403606+

>mRNA_H-akashiwo_Contig921.5.1 ID=mRNA_H-akashiwo_Contig921.5.1|Name=mRNA_H-akashiwo_Contig921.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig921:403184..403606+ (Heterosigma akashiwo CCMP452)
ATGATCTGGGAGCACTCTCAGGAACTTTTTGCCGAGTTCTTGGAGAAGCT
CAATGGCATTAACCCGAAGATCAAGTGGGAGGTGGTGTTTGAGAAAAATG
GGCAGTTGCCTTTTCTGGACGTGTTAGTGGTGAGAAATGAGGATGGCTCT
TTTACTACCACGGTCTACCGGAAACCCACACACTCTGACAGGTATCTCAA
TTGGACTTTCAACCATCCTGTGAAGGACAAACTTTCTGGTATCAGAACTT
TGGTCTATCGGGCTAACCACTACTGCTCTACGGCGAGCCTGAAGATGGAG
GAGTTGGCCCATTTGAGGAAGACTTTTGCTGACACCGGGTATCCGGAGGA
GTTCGTGGAGGTAGCTTTGCGGAAGGGTCCCATGACGGCTGAGGAG
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