mRNA_H-akashiwo_Contig921.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig921.2.1
Unique NamemRNA_H-akashiwo_Contig921.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig921.2.1 vs. uniprot
Match: A0A7S3XU85_HETAK (5'-deoxynucleotidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XU85_HETAK)

HSP 1 Score: 147 bits (371), Expect = 6.620e-42
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 QNKDLSEFFKSTEGYFKTQQVQQWDQELRAQRAARLQKRGGETEEGPGEEHSLQPRTNKRKSGALLKEEKDDWGK 225
            QNKDLSEFFKSTEGYFKTQQVQQWDQELRAQRAARLQKRGGETEEGPGEEHSLQPRTNKRKSGALLKEEKDDWGK
Sbjct:  192 QNKDLSEFFKSTEGYFKTQQVQQWDQELRAQRAARLQKRGGETEEGPGEEHSLQPRTNKRKSGALLKEEKDDWGK 266
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig921.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XU85_HETAK6.620e-42100.005'-deoxynucleotidase n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig921contigH-akashiwo_Contig921:71176..71870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FVA9
Preferred nameHDDC2
PFAMsHD_3
Model size326
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K07023,ko:K07198,ko:K13800,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR00158,R00512,R01665,R11891,R11892
KEGG Pathwayko00240,ko00983,ko01100,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map00240,map00983,map01100,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
KEGG ModuleM00052
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004675,GO:0004888,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016788,GO:0019199,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0023052,GO:0030431,GO:0032501,GO:0036211,GO:0038023,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060089,GO:0065007,GO:0071704,GO:0071944,GO:0140096,GO:1901564
Exons2
Evalue7.15e-06
EggNOG OGsCOG1896@1|root,KOG3197@2759|Eukaryota
EC2.7.11.11,2.7.4.14
DescriptionHD domain
Cds size228
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.6679206-CDS-H-akashiwo_Contig921:71175..712351681388043.6679206-CDS-H-akashiwo_Contig921:71175..71235Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig921 71176..71235 +
1681388043.6843705-CDS-H-akashiwo_Contig921:71606..717741681388043.6843705-CDS-H-akashiwo_Contig921:71606..71774Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig921 71607..71774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.6927636-UTR-H-akashiwo_Contig921:71774..718701681388043.6927636-UTR-H-akashiwo_Contig921:71774..71870Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig921 71775..71870 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig921.2.1prot_H-akashiwo_Contig921.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig921 71176..71774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig921.2.1

>prot_H-akashiwo_Contig921.2.1 ID=prot_H-akashiwo_Contig921.2.1|Name=mRNA_H-akashiwo_Contig921.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
QNKDLSEFFKSTEGYFKTQQVQQWDQELRAQRAARLQKRGGETEEGPGEE
HSLQPRTNKRKSGALLKEEKDDWGK*
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mRNA from alignment at H-akashiwo_Contig921:71176..71870+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig921.2.1 ID=mRNA_H-akashiwo_Contig921.2.1|Name=mRNA_H-akashiwo_Contig921.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=695bp|location=Sequence derived from alignment at H-akashiwo_Contig921:71176..71870+ (Heterosigma akashiwo CCMP452)
CAAAACAAAGATCTTTCTGAATTTTTCAAATCTACTGAGGGTTACTTCAA
GACACAGCAGGTAAAAAATCTTTGTCCTCTCTTTCCCTTTCCAGCATCAT
TTGATTGGCACAAGCAGCATCTGCCCTTCTATGAAGTTTTTTTTTACACC
TGCAGCAACAAGCAGGGCTGCAACTAAGTACAACGGGAGACAGCATTGGT
GTAGGCATAAATATTGTCGTTACAATCCCAGTAACTCAATTTTGTACCAA
ATAAGAAGAATTAAAGGCGAAAATAGAGGAACAACTACATCAACAGCAGC
AGCAGCAGCAGTAACAAGGGGCGTGTGCAAATGTCTACGGGTGCATTGAT
GCCTGCACCAAAGCTATATCCCTTCATGTTATCATCCAAATTATATTCCT
CCTTTTCATCTTCTTTGTCGTTTTTCTTCAGGTGCAGCAGTGGGACCAGG
AGTTGCGGGCCCAGAGGGCAGCTCGTCTTCAAAAAAGGGGGGGAGAAACA
GAAGAAGGGCCTGGAGAAGAACACTCATTGCAGCCCAGAACTAACAAGAG
GAAGTCAGGGGCCCTCCTGAAGGAAGAAAAGGATGATTGGGGCAAATGAT
ACTCAAAAGAGGGTACCATTCGATGAGGAAAACCATGTTTTTTACAAGTC
AATCAACAGCAAGAAATAACAAAATTAACAACAGATTTTACTCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig921:71176..71870+

>mRNA_H-akashiwo_Contig921.2.1 ID=mRNA_H-akashiwo_Contig921.2.1|Name=mRNA_H-akashiwo_Contig921.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig921:71176..71870+ (Heterosigma akashiwo CCMP452)
CAAAACAAAGATCTTTCTGAATTTTTCAAATCTACTGAGGGTTACTTCAA
GACACAGCAGGTGCAGCAGTGGGACCAGGAGTTGCGGGCCCAGAGGGCAG
CTCGTCTTCAAAAAAGGGGGGGAGAAACAGAAGAAGGGCCTGGAGAAGAA
CACTCATTGCAGCCCAGAACTAACAAGAGGAAGTCAGGGGCCCTCCTGAA
GGAAGAAAAGGATGATTGGGGCAAATGA
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