mRNA_H-akashiwo_Contig920.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig920.10.1
Unique NamemRNA_H-akashiwo_Contig920.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig920.10.1 vs. uniprot
Match: A0A7S3XJZ4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XJZ4_HETAK)

HSP 1 Score: 164 bits (414), Expect = 2.320e-47
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 GNLLVQQFFTGISGNGKNEKKQNGSSKLTDQRLEVLGEAKEIRAKLEENQRLSKLMSIAANSALRALFEDTAFAIVSTTLSLLVFGEGA 267
            GNLLVQQFFTGISGNGKNEKKQNGSSKLTDQRLEVLGEAKEIRAKLEENQRLSKLMSIAANSALRALFEDTAFAIVSTTLSLLVFGEGA
Sbjct:  293 GNLLVQQFFTGISGNGKNEKKQNGSSKLTDQRLEVLGEAKEIRAKLEENQRLSKLMSIAANSALRALFEDTAFAIVSTTLSLLVFGEGA 381
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig920.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XJZ4_HETAK2.320e-47100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig920contigH-akashiwo_Contig920:438466..442264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size271
Hectar predicted targeting categoryother localisation
Exons2
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.3851953-CDS-H-akashiwo_Contig920:438467..4385401681388043.3851953-CDS-H-akashiwo_Contig920:438467..438540Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig920 438468..438540 -
1681388043.3966718-CDS-H-akashiwo_Contig920:442070..4422641681388043.3966718-CDS-H-akashiwo_Contig920:442070..442264Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig920 442071..442264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig920.10.1prot_H-akashiwo_Contig920.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig920 438468..442264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig920.10.1

>prot_H-akashiwo_Contig920.10.1 ID=prot_H-akashiwo_Contig920.10.1|Name=mRNA_H-akashiwo_Contig920.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
GNLLVQQFFTGISGNGKNEKKQNGSSKLTDQRLEVLGEAKEIRAKLEENQ
RLSKLMSIAANSALRALFEDTAFAIVSTTLSLLVFGEGA
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mRNA from alignment at H-akashiwo_Contig920:438466..442264-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig920.10.1 ID=mRNA_H-akashiwo_Contig920.10.1|Name=mRNA_H-akashiwo_Contig920.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=3799bp|location=Sequence derived from alignment at H-akashiwo_Contig920:438466..442264- (Heterosigma akashiwo CCMP452)
GGCAACCTTTTAGTGCAGCAATTCTTCACTGGGATCAGTGGCAATGGTAA
GAATGAAAAAAAACAAAATGGATCATCAAAATTGACAGACCAGCGGCTAG
AGGTGCTTGGTGAGGCCAAGGAAATAAGAGCAAAGCTTGAAGAAAATCAA
AGGCTTTCCAAACTTATGAGCATTGCTGCAAACAGCGCCTTGAGGTATGT
GCACACCACCAACAACCATGAAAATATAACGGTTAAATTAAAACCACCAT
CATCATCATCATATATATACCGATTGTCATATATATTCCCACTCCTTTTT
AGAATTTTTAGAAGTAGTTTATGGAATTTTAGTACGCATACTATGAGGAT
CATCACGGTCCCGGTCAATTGACCGCAATGCAAAGGGTGCACTTCTGCCC
TGCACATGAGGCCAGGGTGTAACGGCATGGGCCATACAGGCTGAGCTGTA
CAAACATGCACAGGGTTCTAGAGTCGGCCAGGGTGCGGTCCCATCATGAC
ACTCAGGGGAGGGAGTGCCCTGATCTGCAGGTTTGCACCTTGGACCATTG
GCACGCGATTAATACCAATGGTTGCCCTGGGCTTATGTACTGGAGGGCAG
TCGTGAGCATTGCATTGAGGGAGGAGGGAATGTGGGGAGGGCTGGGGCTT
GCAAGGCTAGTTTTCGGTGCCTCGCCTGCAGCAGCAGCGATCCAGCGTGG
ATTTTTCCGTTGCACAGGCAGGTTGGGGCACTCTTCGCTTACACAAGGGG
CAGCAATCAGTGGGATTTAAGGACAGGCCTGGGTGGTCCGGCACGCTTTT
GGGGGGTGTTGCGGGCGACGCTGAGGAATGTGGGGGCTAGAGGTCGCAGA
GGGGGCGCAAGCAGAGGGGCAGGGGTTTCGCCGCCAGCCTCGCCAAGGAG
GGCGAGGCCATTCAATCTTCGCTCTTCAGCTGCTGAGCACCACCACCAAA
AGCACGTCACCTGCTGCTGCTGCAGCAGCAGAGCACCAGGAACAGCAGCA
GCAGCAGAGGGAGGTCAGTGGTGGAGGGAGGCGACCAAGGGGGCAAGAAG
AAGAGGCACAGGGGGGGGACCTCACTGACCTCAGAAGAGGTGAATGAATT
ATTCTTCGCAACATTTTGATTGTTTCGCAGGTGGAGGAGCTTCCGATTGG
CCGGGGGATGGCCAATTAGAATCCGGAGTGGAGCTCAATGGGGAGGAGGG
GAAGCGGGAAGAATCGCAGCCGCCGCCGATTGGTGGGAGTGGTCAGAAAA
TGTCCGGAGCCAGGGGGGGGTAACCTGAGGTGGGAGACTCGCCACTGAGA
ATGGTGGGTGAAGCTGGGAGGAAAATAGAAGGGGGGAGAGAGAGAGAAAT
GCCAGCTGCTGATATATGGGAAGAAATCGCCCAGTCGGTTAGTGAGGTGT
TTGTTGGGGGCTTGCTAGACGAAATAAGATTGCACAGCGATAAAGGGAAA
CTTGAGACCATTGAGGAAGCCGAGGAAGGTTAATCTTCTTCACCGTCGTC
AACGGATTCGTCGAGCAGTGGGGAAGAAAGGGAGCCTGACTCTCAGGGAG
AGTAAGACGGGGAGTGTAGCGACACAGACCCCCGGAAAAGAGGGTGGGTA
ACTGGCGCTGGGGGAACGAAGGGCGAAGATGGGTTTGAGCCGGTTGTAAG
GAGAGCGAGCCGTCGGCTGGCAAAGCGGGAGCGCCAGAGGGGAATACAGC
GGGAACGGGCTGAGAGGGAGGCGCAGGCAAAGGAGCAAGCGAGACAGGAC
AGCCTGCTTCAGCACCAAGCCAGGTCCAAGGCAACACAGGAGCGCCAGGA
AGCAGAGGCCGGGAGGGCAGCTGAAAGGGCATGGCAGCTTGGGGGCCGAG
GGAGGGGTGGTGCAGCCATGATGCAAGGGGAGGGGGTGGATTGGCTGGGG
AATAGGGGACAGGGCAGGGGCCCTGGGCTGGACGGGGAGAAGTCAGCTGG
AGAAGGGGGGGGTGCGGTGAGCGCTGCGCAGCCCCCTCCACTACAGGCCA
AACTCAGTCCCGGAAGTGGCGACTTGTTGATGGATATAGCTTGTGGGAAG
TGTGGCATCATAAAGCACCCTACTGGGCTAGTCAAAGAGCGCCCAATTAG
GGGATGCCACGTCTGCTGCCGGGGTAGGGAGAGCGAGGGAGGGGGCTGCA
ACTTGGAGGATGGTAAGGCCTTCTTCACTGCTATGTTTGTTGAGCTGGGT
AACCCACGGACGCAGTTTCATGTGAGAGTTATGGGGCAGGATTGGCTCGT
CCAGCTGGGGATTGAGAAGTCACACCATTTTAGTAGGTAGGGGCTTGGTT
GGGGGTTAACACCAGGGGTACATTGATGAGGGGACAGCTGGGGGGTACTG
AAGGTACTTGTTCTTTTGTACTGATGACGATTCGGGCAGATGTATTGAGA
AGTGGCAGATAGTAGTGGAAGGGTCTGCGTATAGAAGCTAGGGGTTCTGA
TTAATAGGACCACCATCAGGGCATAGGAAGTTCCAAAAGGAAGACGTTGA
CCCAGTCTAGTGCTCCACGGACACCATCAAAGCTTAAAGGCCAAGGCCAT
AAATACTGCTATAGCGCATGAAATACAACATCATGAAACTATAATGTGTG
ATTCCAATATTTTAAAAGGGCTGTTGCAGACCGGTTTCGGCTATAAAAGC
CATCGTCAGTACAACTAGTGTCCAAAATAAATGGGAATTCTTTTTGCCCC
AAAAGCGATTTGAAAGGCAAGAATTGAAACTAAAATTATCACCATCATCA
TACCGATATATTTCAGAGGGTAGAGCACCTCCCTGTGGGATTTGGCGACG
GCTTGGACCGCTGGTGCCCACGATCGGTTTCAAACTTGCACCGCTGGCAC
CCTACGTCTACCGCTGACGTTGGAATGCTGATGCCCCCGATGAACACCGA
TCCCTCCGCTAGCGTCATGTTGTGGGTGACGTCACCCAAAGCAGCTGCTG
TTGCTCAACGAGCCGACTCGGAATAAGCTCACTTGGACGCGAGCCGTCCC
TTTCCATCAAATTTTACAACCTGCACGCTTTTTTTTTTTAAACCAACATA
TAATGTTGAGAAGAAGAAAAAGATGTGAAAAATATTTTGACTCCTCTTCC
TGTTCATCAAATAGGTACGCAGCATGACTAGTTCCAGTTGTTGGTATTGA
CTTTTTTTAATCTCCCAACGTGGAGATTGTCTTAGTCCCGCACCCGGGAC
AAAAAAGTCTCCCCAGAAATCAGTGGGAGATGATCGTATTATATGAGATG
ATCGTATTATATGAAAATGAGATTCAAAAAGTTTAAGATTAGATTGCTTG
AAAAACGTACGCCTCTGTAAATTTGTACGTCTGAAATTTCTTGAAAGAAC
AAACACGTTTGTGTATGCTGACGCTAGATGTCCCAATTAATCCTTTGAGT
ACCCCAATACCTAAGGAGGTATTAGGGAATACCTAAGGAGGTATTAGGGA
GGTAATATGTAATTACACTCCCCCCCTGAAAACATGAGCAAACTAAGACA
CCCAACAAAACATATAATATGACAATATATACAATGGTATAAGCACCCCA
CAACAACCTACGGCAAACCAACCACCTATACTACTACTGCCTGGGGAGGA
AAGGCAACCCGGCACCATCCTCAAAGCCAGAGCTCGTTCACTTCAGCCTT
GAGCCCCGGAGACATCCACGGCCCATAATTTATTGCTGTATTACCCCTCT
TCTGTTCAAAAAAAAAATTAATAGGGCACTCTTTGAAGACACAGCTTTTG
CAATTGTGTCAACAACTCTATCCTTGTTGGTGTTTGGGGAAGGCGCCAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig920:438466..442264-

>mRNA_H-akashiwo_Contig920.10.1 ID=mRNA_H-akashiwo_Contig920.10.1|Name=mRNA_H-akashiwo_Contig920.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig920:438466..442264- (Heterosigma akashiwo CCMP452)
GGCAACCTTTTAGTGCAGCAATTCTTCACTGGGATCAGTGGCAATGGTAA
GAATGAAAAAAAACAAAATGGATCATCAAAATTGACAGACCAGCGGCTAG
AGGTGCTTGGTGAGGCCAAGGAAATAAGAGCAAAGCTTGAAGAAAATCAA
AGGCTTTCCAAACTTATGAGCATTGCTGCAAACAGCGCCTTGAGGGCACT
CTTTGAAGACACAGCTTTTGCAATTGTGTCAACAACTCTATCCTTGTTGG
TGTTTGGGGAAGGCGCC
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