mRNA_H-akashiwo_Contig92.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig92.7.1
Unique NamemRNA_H-akashiwo_Contig92.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig92.7.1 vs. uniprot
Match: A0A7S3XUY0_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUY0_HETAK)

HSP 1 Score: 340 bits (871), Expect = 9.420e-113
Identity = 198/211 (93.84%), Postives = 200/211 (94.79%), Query Frame = 2 
Query:    2 FGDEIRIVELSERTTAELNQKIQDCFGLTSEDVDVFFVNEGQLISIKQSQDLVLGLRLIDGDGPIHIKVIAKGEKLSQPDVASTAPVDVSVHGMASQAIYKFGGVYCPPDQLEALMEVLKLKNKRLVKVGLLPASAVASASDE-LXXXXXXXXXXXXXXAEKAGSDEDGFAVVDDEDLPVTEPVDVKPSGTSE-VKVDPMENDDAHAPHDG 628
            FGDEIRIVELSERTTAELNQKIQDCFGLTSEDVD FFVNEGQLISIKQSQDLVLGLRL+DGDGPIHIKVIAKGEK SQPDV+STAPVDVSVHGMASQAIYKFGGVYCPPDQLEALMEVLKLKNKRLVKVGLLPASAVASASDE  XXXXXXXXXXXXX AEK GSDEDGFAVVDDEDLPV EPVDVKPSGTSE VK DPMENDDAHA H G
Sbjct:    8 FGDEIRIVELSERTTAELNQKIQDCFGLTSEDVDAFFVNEGQLISIKQSQDLVLGLRLVDGDGPIHIKVIAKGEKPSQPDVSSTAPVDVSVHGMASQAIYKFGGVYCPPDQLEALMEVLKLKNKRLVKVGLLPASAVASASDEPXXXXXXXXXXXXXXKAEKPGSDEDGFAVVDDEDLPVAEPVDVKPSGTSEEVKEDPMENDDAHAFHHG 218
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BLAST of mRNA_H-akashiwo_Contig92.7.1 vs. uniprot
Match: A0A7S4D7E1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7E1_HETAK)

HSP 1 Score: 196 bits (497), Expect = 4.600e-57
Identity = 121/174 (69.54%), Postives = 127/174 (72.99%), Query Frame = -1 
Query:  608 SRTFHA-ALAIAFPTAALXXXXXXXXXSTTSETTLANSLVPVVEVSASNSNGAHQAKLDKQFGANLQHAKDGVQDRRWERDPFLLKSLDNWSRHEHLAHGARQHVQGRAMTVWPVG----------------------------WTVAMRSVRWTIHTMRTMVGR--PVVGSMG 1036
            SRTFHA A+A A P    XXXXXXXX S TS+ TLANSLVPVVEVSASNSNGAHQAKLDKQFGANLQHAK+GVQDRRWERDPFLLKSLDNWSRH+HLAHGARQHVQGRAMTVWP G                            WTVAMR   W IHTMRTMVG   P+V S+G
Sbjct:   13 SRTFHALAIATALPXXXXXXXXXXXXASFTSKATLANSLVPVVEVSASNSNGAHQAKLDKQFGANLQHAKNGVQDRRWERDPFLLKSLDNWSRHKHLAHGARQHVQGRAMTVWPKGRAVAVGPVGRRXXXXXXXXXXXXXXXXXWTVAMR---WAIHTMRTMVGWRVPMVESVG 183
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BLAST of mRNA_H-akashiwo_Contig92.7.1 vs. uniprot
Match: A0A7S3XSJ6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSJ6_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 4.470e-9
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 2 
Query:  764 GPVVEALQEKGISLPPPVLHTVLRMLKVRPKLFVKLGLVRPIGVARRDFHHWNK 925
            GP+ EA  + G+ L P  LH+VLR+LKVRPK     GLVRP+GVARRD+ +WN+
Sbjct:  122 GPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRGLVRPLGVARRDYRYWNQ 175
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BLAST of mRNA_H-akashiwo_Contig92.7.1 vs. uniprot
Match: A0A6S9EPG3_HETAK (Hypothetical protein n=5 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9EPG3_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 8.890e-8
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 2 
Query:  764 GPVVEALQEKGISLPPPVLHTVLRMLKVRPKLFV-KLGLVRPIGVARRDFHHWNK 925
            GP+ EA  + G+ L P  LH+VLR+LKVRPK    + GLVRP+GVARRD+ +WN+
Sbjct:  124 GPIYEAFVQNGVLLAPDTLHSVLRILKVRPKRICGRGGLVRPLGVARRDYRYWNQ 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig92.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3XUY0_HETAK9.420e-11393.84Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S4D7E1_HETAK4.600e-5769.54Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3XSJ6_HETAK4.470e-957.41Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6S9EPG3_HETAK8.890e-856.36Hypothetical protein n=5 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig92contigH-akashiwo_Contig92:767787..769164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1378
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001850.1
Cds size942
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388042.557317-UTR-H-akashiwo_Contig92:767786..7680661681388042.557317-UTR-H-akashiwo_Contig92:767786..768066Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig92 767787..768066 +
1681388042.5892909-UTR-H-akashiwo_Contig92:769008..7691641681388042.5892909-UTR-H-akashiwo_Contig92:769008..769164Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig92 769009..769164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388042.5757387-CDS-H-akashiwo_Contig92:768066..7690081681388042.5757387-CDS-H-akashiwo_Contig92:768066..769008Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 768067..769008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig92.7.1prot_H-akashiwo_Contig92.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig92 768067..769008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig92.7.1

>prot_H-akashiwo_Contig92.7.1 ID=prot_H-akashiwo_Contig92.7.1|Name=mRNA_H-akashiwo_Contig92.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=314bp
MASQAIYKFGGVYCPPDQLEALMEVLKLKNKRLVKVGLLPASAVASASDE
LDEDEDDQDDDDDEKAEKAGSDEDGFAVVDDEDLPVTEPVDVKPSGTSEV
KVDPMENDDAHAPHDGPPHHGPHGMYGPPHGPHGHGPPHGPHGHGPPLHM
LPGPMRKMFVPGPVVEALQEKGISLPPPVLHTVLRMLKVRPKLFVKLGLV
RPIGVARRDFHHWNKRIRKGGFAGGAGCGKGKGQRKGCRGKGNGKGSMKG
PGVHGPPFHGPPRHGPGMGMYGPPPHGPPHHGPGMGMHGPPPPHGMHAPP
RAYYGADYGGGEY*
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mRNA from alignment at H-akashiwo_Contig92:767787..769164+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig92.7.1 ID=mRNA_H-akashiwo_Contig92.7.1|Name=mRNA_H-akashiwo_Contig92.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1378bp|location=Sequence derived from alignment at H-akashiwo_Contig92:767787..769164+ (Heterosigma akashiwo CCMP452)
CTTTGGAGATGAAATACGCATTGTGGAGCTTAGTGAGCGCACAACCGCTG
AGCTAAACCAGAAGATCCAAGACTGCTTTGGTCTGACCTCTGAGGATGTT
GACGTGTTCTTCGTCAATGAAGGACAGCTGATTAGCATCAAGCAATCTCA
GGATTTAGTCCTGGGTCTTCGTCTTATCGATGGCGATGGGCCTATCCATA
TCAAGGTCATTGCAAAGGGTGAAAAGTTATCCCAGCCTGATGTGGCGTCC
ACTGCTCCTGTTGATGTTTCAGTTCACGGGATGGCTTCCCAAGCCATCTA
CAAATTCGGAGGAGTTTACTGCCCCCCAGACCAGCTGGAGGCGCTGATGG
AAGTGCTCAAACTCAAGAACAAGCGACTTGTGAAGGTTGGGCTGTTGCCT
GCTTCAGCAGTCGCTTCTGCAAGCGATGAGCTTGATGAGGATGAAGACGA
CCAAGACGATGACGATGACGAGAAGGCCGAGAAGGCTGGCAGTGATGAGG
ACGGATTTGCTGTTGTTGACGACGAAGATCTTCCCGTTACCGAGCCTGTT
GATGTGAAGCCATCTGGTACATCAGAGGTCAAGGTAGACCCCATGGAGAA
TGATGATGCCCATGCTCCCCACGACGGGCCGCCCCACCATGGTCCTCATG
GTATGTATGGTCCACCTCACGGACCTCATGGCCACGGTCCACCCCACGGG
CCACACGGTCATGGCCCTCCCCTGCACATGCTGCCTGGCCCCATGCGCAA
GATGTTCGTGCCTGGACCAGTTGTCGAGGCTCTTCAGGAGAAAGGGATCT
CTCTCCCACCTCCTGTCCTGCACACCGTCCTTCGCATGCTGAAGGTTCGC
CCCAAACTGTTTGTCAAGCTTGGCCTGGTGCGCCCCATTGGAGTTGCTCG
CAGAGACTTCCACCACTGGAACAAGAGAATTCGCAAGGGTGGTTTCGCTG
GTGGTGCTGGCTGTGGCAAAGGCAAAGGCCAGCGCAAGGGCTGCCGTGGG
AAAGGCAATGGCAAGGGCAGCATGAAAGGTCCTGGAGTGCATGGCCCACC
CTTCCATGGCCCACCTCGCCATGGACCTGGCATGGGCATGTATGGCCCAC
CACCGCATGGCCCTCCTCACCATGGCCCCGGTATGGGCATGCACGGTCCT
CCCCCGCCCCATGGTATGCATGCCCCTCCCCGCGCCTACTATGGTGCCGA
CTATGGTGGCGGGGAATACTAGAAGGGATAGTTTTGAGTCCTGCTGGGTT
TGAATCTTGGTGCAACTTGATACAAGATGTGCCCACCAGTAAGGGCAAGT
CCATTCTTGGCCCTTGGCAGAACGGTTGCAACAGTATTCTGTGCTTCCAT
CTCACTGCTGACTCCTGTCCCTTCTCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig92:767787..769164+

>mRNA_H-akashiwo_Contig92.7.1 ID=mRNA_H-akashiwo_Contig92.7.1|Name=mRNA_H-akashiwo_Contig92.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=942bp|location=Sequence derived from alignment at H-akashiwo_Contig92:767787..769164+ (Heterosigma akashiwo CCMP452)
ATGGCTTCCCAAGCCATCTACAAATTCGGAGGAGTTTACTGCCCCCCAGA
CCAGCTGGAGGCGCTGATGGAAGTGCTCAAACTCAAGAACAAGCGACTTG
TGAAGGTTGGGCTGTTGCCTGCTTCAGCAGTCGCTTCTGCAAGCGATGAG
CTTGATGAGGATGAAGACGACCAAGACGATGACGATGACGAGAAGGCCGA
GAAGGCTGGCAGTGATGAGGACGGATTTGCTGTTGTTGACGACGAAGATC
TTCCCGTTACCGAGCCTGTTGATGTGAAGCCATCTGGTACATCAGAGGTC
AAGGTAGACCCCATGGAGAATGATGATGCCCATGCTCCCCACGACGGGCC
GCCCCACCATGGTCCTCATGGTATGTATGGTCCACCTCACGGACCTCATG
GCCACGGTCCACCCCACGGGCCACACGGTCATGGCCCTCCCCTGCACATG
CTGCCTGGCCCCATGCGCAAGATGTTCGTGCCTGGACCAGTTGTCGAGGC
TCTTCAGGAGAAAGGGATCTCTCTCCCACCTCCTGTCCTGCACACCGTCC
TTCGCATGCTGAAGGTTCGCCCCAAACTGTTTGTCAAGCTTGGCCTGGTG
CGCCCCATTGGAGTTGCTCGCAGAGACTTCCACCACTGGAACAAGAGAAT
TCGCAAGGGTGGTTTCGCTGGTGGTGCTGGCTGTGGCAAAGGCAAAGGCC
AGCGCAAGGGCTGCCGTGGGAAAGGCAATGGCAAGGGCAGCATGAAAGGT
CCTGGAGTGCATGGCCCACCCTTCCATGGCCCACCTCGCCATGGACCTGG
CATGGGCATGTATGGCCCACCACCGCATGGCCCTCCTCACCATGGCCCCG
GTATGGGCATGCACGGTCCTCCCCCGCCCCATGGTATGCATGCCCCTCCC
CGCGCCTACTATGGTGCCGACTATGGTGGCGGGGAATACTAG
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