mRNA_H-akashiwo_Contig92.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig92.36.1
Unique NamemRNA_H-akashiwo_Contig92.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A7S3XUA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUA9_HETAK)

HSP 1 Score: 473 bits (1217), Expect = 4.550e-166
Identity = 265/302 (87.75%), Postives = 265/302 (87.75%), Query Frame = 1
Query:    1 VLALLAREILLFTTRRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWR--------TAAAVXXXRPRAPLDRETPADWYD-RDTDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLDFFL 879
            VLALLAREILLFTTRRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMA     P                TAA     R      RE   DWY  RDTDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLDFFL
Sbjct:   27 VLALLAREILLFTTRRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMARTPLRPXXXXXXXXXXXXXXXVTAAYAPLARL---FGREYATDWYTTRDTDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLDFFL 325          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: F2UJG3_SALR5 (Oxidoreductase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UJG3_SALR5)

HSP 1 Score: 206 bits (523), Expect = 3.770e-61
Identity = 125/299 (41.81%), Postives = 182/299 (60.87%), Query Frame = 1
Query:    1 VLALLAREILLFTTRRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARW------RTAAAVXXXRPRAPLDRETPADWYDRDTDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLDFFL 879
            +LA+L   + +F  +  +P H +GAIL++G S GIGR AA+ LAK+G++VYA VRK+ D  SL+ EG + LIPI +DV    QI  A+ T+   G + +GL+NNAG+  R  LE+  ++ I+ M++VNV G++ ++QAFLP++RE+KGRIVN+GS+A F+++PG A+Y+ TKF L GL+D LRRE+    V+V ++E   V T +A +S    AAA RW       T A          L  E  AD  +  T +A+  A+T + P   Y  A     PA +   +  LLPD L D  L
Sbjct:   12 ILAVLLYLLFVFPVKY-FPVHDSGAILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTIKKGGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRENKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVSTAIASKSTGE-AAATRWVSREMQDTYAWFFADFEEKRLKGEALADGPE-VTTKAITHALTSRTPETRYIVANTYGIPAKIAALINWLLPDRLGDIVL 307          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A9V381_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V381_MONBE)

HSP 1 Score: 199 bits (507), Expect = 8.420e-59
Identity = 118/286 (41.26%), Postives = 165/286 (57.69%), Query Frame = 1
Query:   43 RRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWRTA----------AAVXXXRPRAPLDRETPADWYDRDTDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLD 870
            R +Y  H  G +LV+GAS GIGR AAI LAK G+ VY  VRKE DA  +   G   L PI +DV NS QI+ A+ T+S      + L+NNAG+  R+ LE+  +  ++  ++VN+ GL+E +QAFLPLLR +KGRI+N+GSVA  + + G A Y+GTKFAL G+SD LRREL+ L V+V L+E   V+T +  +S+   +A   W +           +     R RA    +TP       T  A++ A+   +PR  Y  A     PAW+   +  LLPD  +D
Sbjct:   24 RPTYHVHEQGVVLVTGASSGIGRHAAIELAKLGYEVYGTVRKERDANDIRGLGIKTLHPIIMDVTNSEQIKNAVETISKLDQPLIALVNNAGISSRAPLEAYDMNRVRNTFEVNIFGLVETTQAFLPLLRANKGRIINIGSVAGLVGMEGSAVYSGTKFALEGISDSLRRELFPLGVSVSLVEPAYVKTEIVHKSSGAQSAE-HWASKEMLEVYDHFFSVADEKRQRAFEHADTPEC-----TTNAIVDAIRSPQPRTRYVVANTHKIPAWITTGMTWLLPDRAVD 303          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A7R9YBD3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBD3_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.410e-52
Identity = 115/285 (40.35%), Postives = 172/285 (60.35%), Query Frame = 1
Query:   40 TRRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQ----FVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWRTAAAVXXXRPRAPLDR--------ETPADWYDRDTDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPD 858
            T R+YP    G ++++GAS GIG DAA+AL KQGF+VYAGVRKE D   + +E F ++ PI LDV   +Q+  A   V++         VGL+NNAG+  R  +E + ++ ++ ++DVN  G+  ++QAFLPLLRES+GRIVN+GSVA+FL  PG +AY+G+K AL+  +D LR E+   D++V +LE G V+T++  ++       A WRTA        +  +D         ET AD  +  T+ A++ A+T   P   Y  A     P+ L++ LV +LP+
Sbjct:   50 TIRTYPVPAKGIVVITGASSGIGLDAAVALDKQGFTVYAGVRKEEDMQRISAE-FPSIRPILLDVTKEAQVYSASEKVAADAKSEEKAVVGLVNNAGISRRLPVELEDVDAVRSLFDVNFFGVYTVTQAFLPLLRESQGRIVNVGSVANFLPHPGSSAYSGSKAALKSFTDALRMEVSKWDMSVSILEPGYVKTKILQKTI---GENAPWRTADPQKIPLYQKYVDHQEKGRRRSETMADSTE-VTNGAIIHALTSPTPSIRYVVANVNGIPSQLVKFLVDVLPE 329          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A482SI74_9ARCH (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI74_9ARCH)

HSP 1 Score: 174 bits (440), Expect = 8.740e-49
Identity = 116/317 (36.59%), Postives = 172/317 (54.26%), Query Frame = 1
Query:    1 VLALLAREILLFTTRRSYPTHTAGAILVSGASQGIGRDAAIALAKQ-GFSVYAGVRKEMDAASLESE-GFDNLIPIFLDVQNSSQIQEAL----VTVSSSGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWRTAAAVXXXRPRAPLDRET---PADWYDRDTDR-----------------AVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLDF 873
            VLA + +++L       YP H  G +LV+G S GIG  A + LA+   F+V+AGVR++ DA  L+ E G   ++PI LDV + S I +A+    V +    L FVGLINNAG+      E+  +E+ + ++DVNV GL+E++Q FLPLLRESKGRI+N+GS A   ++P  + Y  TK A+  LSD LRREL    VAV L+E G V++ +   S             +     + + P++  +   P  + ++  D+                 A+  AMT  +P   Y  A  G  PAW++R L  +LPD ++DF
Sbjct:   11 VLAFVLKKVLHKLLTPHYPVHDHGIVLVTGTSSGIGNAAVMDLARDTNFTVFAGVRRKEDAEKLKKEAGERKIVPILLDVTSKSSIMKAVENIKVYMKDHNLPFVGLINNAGIGHGIVFETYPLEEARRVFDVNVFGLMEVTQFFLPLLRESKGRIINIGSFAGTHAMPMGSVYCATKHAVEALSDSLRRELRDCKVAVSLMEPGFVKSVLVDTS----------HIQSKEILLKHKVPIEEMSKVYPKHFNEKLQDKKRDMLQGRPSEPSEVTAAIHHAMTSSQPEARYVLANVGGVPAWIVRSLFHVLPDSMVDF 317          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A849NHC1_9BACT (SDR family oxidoreductase n=1 Tax=Ignavibacteriae bacterium TaxID=2026749 RepID=A0A849NHC1_9BACT)

HSP 1 Score: 166 bits (421), Expect = 1.980e-46
Identity = 87/181 (48.07%), Postives = 126/181 (69.61%), Query Frame = 1
Query:   76 ILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSS-SGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRM 615
            +L+SG+S GIG+  A+ L + G+ VYAGVRKE DA  L SE   NL P+ LDV +S  I   L  + + +  +F GL+NNAG+     LE+  IED++ + DVNVIGL+ L+Q F+PLL++SKG+I+N+GS +S+LS PG +AYAG+KFA+R ++D LR EL    ++V L+  G VE+ +
Sbjct:    6 VLISGSSTGIGKACALYLDRLGYKVYAGVRKESDAEKLMSESSKNLKPVILDVTDSKSIDNTLREIEADTESEFFGLVNNAGIGISGVLEAVEIEDVRKLMDVNVIGLLALTQKFIPLLKKSKGKIINIGSTSSYLSFPGGSAYAGSKFAVRAITDALRLELNPFGISVTLISPGAVESEI 186          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A4D9CWE5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWE5_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.330e-46
Identity = 108/291 (37.11%), Postives = 162/291 (55.67%), Query Frame = 1
Query:   34 FTTRRSYPTHTAG--AILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSS----GLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWRTAAAVXXXRPRAPLDRETPADWYDRDTD------RAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLD 870
            + +RR YPT  +G  A+++SGAS GIG DAA+ LA   F VYAGVRKE DA  L S G   L+P+ LDV +   I EA V +++     G+   GL+NNAG++  S +E   +  ++ +YDVNV G++ L+Q FLPLLR   GRIV + S+A FL++P  + Y  +K AL  LSDGLR EL   +V+V +++ G V + +  +S     +A++ + A      +    + +E   D      D      +A+  A+ D+ P+     A     PA     +  +LPD +LD
Sbjct:   20 YASRREYPTPPSGGAAVVLSGASTGIGYDAAVHLADD-FVVYAGVRKENDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERGIPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLRAQAGRIVQISSIAGFLTIPRASGYCSSKHALESLSDGLRLELAHYNVSVTVVQPGAVRSAIFEKSQ----SASQAKLAEDPRELKVYGHMIKEGSTDSIMAKADTPDCTTKAIRQALMDRYPKTREVVANIDGLPAIFAHYMKHMLPDRVLD 305          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: W7TLG0_9STRA (Short-chain dehydrogenase reductase sdr n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLG0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 1.490e-45
Identity = 108/291 (37.11%), Postives = 162/291 (55.67%), Query Frame = 1
Query:   34 FTTRRSYPTHTAG--AILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSS----GLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWRTAAAVXXXRPRAPLDRETPADWYDRDTD------RAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLD 870
            + +RR YPT  +G  A+++SGAS GIG DAA+ LA   F VYAGVRKE DA  L S G   L+P+ LDV +   I EA V +++     G+   GL+NNAG++  S +E   +  ++ +YDVNV G++ L+Q FLPLLR   GRIV + S+A FL++P  + Y  +K AL  LSDGLR EL   +V+V +++ G V + +  +S     +A++ + A      +    + +E   D      D      +A+  A+ D+ P+     A     PA     +  +LPD +LD
Sbjct:  112 YASRREYPTPPSGGAAVVLSGASTGIGYDAAVHLADD-FVVYAGVRKEKDAEMLRSVGKSTLVPVILDVTSQDSIDEAYVKITADAAERGIPVWGLVNNAGIMTASTVEHHDVAGMQKIYDVNVWGVLRLTQKFLPLLRAQAGRIVQISSIAGFLTIPRASGYCSSKHALESLSDGLRLELAHYNVSVTVVQPGAVRSAIFEKSQ----SASQAKLAEDPRELKVYGHMIKEGSTDSIMAKADTPDCTTKAIRQALMDRYPKTREVVANIDGLPAIFAHYMKHMLPDRVLD 397          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A7S4JK69_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4JK69_9EUKA)

HSP 1 Score: 165 bits (418), Expect = 2.940e-45
Identity = 113/282 (40.07%), Postives = 156/282 (55.32%), Query Frame = 1
Query:   49 SYPTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFD--NLIPIFLDVQNSSQIQEALVTVSS----SGLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVVETRMALRSAPPPAAAARWRTAAAVXXXRPRAPLDRETPADWYDRD--TDRAVLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLD 870
            ++  H  G ILV+GAS GIG+ AA ALA QG+ V+AGVRK+    +L+    D  NL PI LDV  S QI++A   + +      L F  L+NNAGV     LE   +E++KW YDVNV GL+E ++ F+P+LR  +GRIVN+GSVA        + YAGTK+A+ GLS+ LRREL    V+V ++E   V T +  +S   P  AA +   A       +         +  D    TD  ++ A+T+ RP+ SY CA     PA +   L  LLP  + D
Sbjct:   57 TFVVHNEGVILVTGASTGIGQQAAFALADQGYEVFAGVRKDAAGKALKELRPDLKNLHPIILDVVKSDQIKKAQDEIEAFCDEKNLPFAALVNNAGVALVGPLEYYDLENMKWTYDVNVFGLMETTKEFIPMLRRDQGRIVNVGSVAGLYGGKLFSVYAGTKWAVEGLSESLRRELAPFGVSVSVVEPAYVRTPIFGKS---PDLAAEYGEEADEAYGLTKMMEMTAKGIELADSTAVTDAVIVDAVTNPRPQVSYVCANLNGLPAKVFVFLKWLLPWQVFD 335          
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Match: A0A367RL58_NOSPU (Short-chain dehydrogenase n=1 Tax=Nostoc punctiforme NIES-2108 TaxID=1356359 RepID=A0A367RL58_NOSPU)

HSP 1 Score: 157 bits (398), Expect = 7.000e-43
Identity = 86/187 (45.99%), Postives = 126/187 (67.38%), Query Frame = 1
Query:   55 PTHTAGAILVSGASQGIGRDAAIALAKQGFSVYAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSS----GLQFVGLINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRIVNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGVV 603
            P H  GAI+++GAS G+GR  A+ L K+G+ V+A VRKE DA SL+S+  +NL PIF+D+    +I+ A   VS S    GL  VGL+NNAG+L    LE  S++D++W ++VNV G I ++Q FLPL+R+ KGRI+N+GS+   +S P ++A   +KFAL   +D LR EL+   + V+L+E G +
Sbjct:    3 PKHK-GAIVITGASTGVGRATALMLDKKGYRVFASVRKEKDAESLKSDSSENLTPIFMDITKPEEIKSAADIVSKSIPDEGL--VGLVNNAGLLVDGPLEFISLDDLRWQFEVNVFGQIAVTQEFLPLIRKVKGRIINIGSIGGVISGPYISALCASKFALEAFTDALRIELHPWGIEVILIEPGSI 186          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig92.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XUA9_HETAK4.550e-16687.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F2UJG3_SALR53.770e-6141.81Oxidoreductase n=1 Tax=Salpingoeca rosetta (strain... [more]
A9V381_MONBE8.420e-5941.26Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A7R9YBD3_9STRA1.410e-5240.35Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A482SI74_9ARCH8.740e-4936.59SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A849NHC1_9BACT1.980e-4648.07SDR family oxidoreductase n=1 Tax=Ignavibacteriae ... [more]
A0A4D9CWE5_9STRA2.330e-4637.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TLG0_9STRA1.490e-4537.11Short-chain dehydrogenase reductase sdr n=2 Tax=Na... [more]
A0A7S4JK69_9EUKA2.940e-4540.07Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A367RL58_NOSPU7.000e-4345.99Short-chain dehydrogenase n=1 Tax=Nostoc punctifor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig92contigH-akashiwo_Contig92:1786800..1787678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog946362.XP_004990606.1
PFAMsadh_short
Model size879
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.19e-62
EggNOG OGsKOG1610@1|root,KOG1610@2759|Eukaryota,39QBJ@33154|Opisthokonta
DescriptionKR domain
Cds size879
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388043.2870932-CDS-H-akashiwo_Contig92:1786799..17876781681388043.2870932-CDS-H-akashiwo_Contig92:1786799..1787678Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig92 1786800..1787678 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig92.36.1prot_H-akashiwo_Contig92.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig92 1786800..1787678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig92.36.1

>prot_H-akashiwo_Contig92.36.1 ID=prot_H-akashiwo_Contig92.36.1|Name=mRNA_H-akashiwo_Contig92.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=293bp
VLALLAREILLFTTRRSYPTHTAGAILVSGASQGIGRDAAIALAKQGFSV
YAGVRKEMDAASLESEGFDNLIPIFLDVQNSSQIQEALVTVSSSGLQFVG
LINNAGVLDRSFLESQSIEDIKWMYDVNVIGLIELSQAFLPLLRESKGRI
VNMGSVASFLSVPGLAAYAGTKFALRGLSDGLRRELYALDVAVVLLEIGV
VETRMALRSAPPPAAAARWRTAAAVAAWRPRAPLDRETPADWYDRDTDRA
VLAAMTDKRPRPSYTCAGAGPAPAWLIRRLVQLLPDHLLDFFL
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mRNA from alignment at H-akashiwo_Contig92:1786800..1787678-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig92.36.1 ID=mRNA_H-akashiwo_Contig92.36.1|Name=mRNA_H-akashiwo_Contig92.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=879bp|location=Sequence derived from alignment at H-akashiwo_Contig92:1786800..1787678- (Heterosigma akashiwo CCMP452)
GTGCTCGCATTGCTCGCGAGGGAGATCCTCTTGTTTACCACCCGCCGATC TTATCCCACGCACACAGCAGGGGCTATCCTAGTTTCAGGCGCCTCTCAAG GAATTGGTCGTGATGCTGCTATTGCCCTTGCAAAGCAAGGTTTTTCTGTG TATGCTGGTGTAAGAAAAGAAATGGACGCGGCGTCCCTGGAATCGGAAGG GTTCGATAATTTGATCCCGATCTTTTTGGACGTTCAAAACAGCTCCCAAA TCCAGGAGGCTCTGGTCACGGTCTCCAGCAGCGGCTTACAGTTTGTCGGA TTGATCAACAATGCCGGCGTGCTTGACCGGTCCTTCCTGGAGTCGCAGTC CATCGAAGACATCAAGTGGATGTACGATGTCAATGTAATCGGCCTGATCG AGCTGTCCCAGGCGTTCCTGCCCCTGCTGCGGGAGAGCAAGGGCCGCATC GTCAACATGGGCTCCGTGGCCAGCTTCCTCTCGGTCCCCGGGCTGGCGGC CTACGCCGGCACCAAGTTCGCGCTGCGGGGTCTCTCGGACGGCCTGCGCC GCGAGCTGTACGCGCTCGACGTCGCCGTGGTCCTGCTGGAGATCGGCGTG GTGGAGACGCGCATGGCCCTGCGCTCCGCTCCGCCCCCCGCCGCCGCCGC GCGCTGGCGGACGGCAGCGGCGGTGGCGGCATGGCGCCCTCGCGCGCCTC TTGACCGCGAAACGCCCGCGGACTGGTACGACCGGGACACGGACCGGGCG GTGCTGGCGGCCATGACGGACAAGCGGCCCCGGCCGTCATACACCTGCGC GGGCGCGGGCCCGGCGCCGGCCTGGCTGATCCGGCGGCTTGTGCAGCTGC TGCCTGATCACCTCCTGGATTTCTTCCTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig92:1786800..1787678-

>mRNA_H-akashiwo_Contig92.36.1 ID=mRNA_H-akashiwo_Contig92.36.1|Name=mRNA_H-akashiwo_Contig92.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=879bp|location=Sequence derived from alignment at H-akashiwo_Contig92:1786800..1787678- (Heterosigma akashiwo CCMP452)
GTGCTCGCATTGCTCGCGAGGGAGATCCTCTTGTTTACCACCCGCCGATC
TTATCCCACGCACACAGCAGGGGCTATCCTAGTTTCAGGCGCCTCTCAAG
GAATTGGTCGTGATGCTGCTATTGCCCTTGCAAAGCAAGGTTTTTCTGTG
TATGCTGGTGTAAGAAAAGAAATGGACGCGGCGTCCCTGGAATCGGAAGG
GTTCGATAATTTGATCCCGATCTTTTTGGACGTTCAAAACAGCTCCCAAA
TCCAGGAGGCTCTGGTCACGGTCTCCAGCAGCGGCTTACAGTTTGTCGGA
TTGATCAACAATGCCGGCGTGCTTGACCGGTCCTTCCTGGAGTCGCAGTC
CATCGAAGACATCAAGTGGATGTACGATGTCAATGTAATCGGCCTGATCG
AGCTGTCCCAGGCGTTCCTGCCCCTGCTGCGGGAGAGCAAGGGCCGCATC
GTCAACATGGGCTCCGTGGCCAGCTTCCTCTCGGTCCCCGGGCTGGCGGC
CTACGCCGGCACCAAGTTCGCGCTGCGGGGTCTCTCGGACGGCCTGCGCC
GCGAGCTGTACGCGCTCGACGTCGCCGTGGTCCTGCTGGAGATCGGCGTG
GTGGAGACGCGCATGGCCCTGCGCTCCGCTCCGCCCCCCGCCGCCGCCGC
GCGCTGGCGGACGGCAGCGGCGGTGGCGGCATGGCGCCCTCGCGCGCCTC
TTGACCGCGAAACGCCCGCGGACTGGTACGACCGGGACACGGACCGGGCG
GTGCTGGCGGCCATGACGGACAAGCGGCCCCGGCCGTCATACACCTGCGC
GGGCGCGGGCCCGGCGCCGGCCTGGCTGATCCGGCGGCTTGTGCAGCTGC
TGCCTGATCACCTCCTGGATTTCTTCCTC
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