mRNA_H-akashiwo_Contig900.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig900.5.1
Unique NamemRNA_H-akashiwo_Contig900.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig900.5.1 vs. uniprot
Match: A0A7S4DGV2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGV2_HETAK)

HSP 1 Score: 137 bits (344), Expect = 9.260e-39
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 SEGVSDMLRTQKLTPGEAAPQLWAETGHWPCPRREPGDKIQAITFDLDDTLFPVMPPILRALE 189
            SEGVSDMLRTQKLTPGEAAPQLWAETGHWPCPRREPGDKIQAITFDLDDTLFPVMPPILRALE
Sbjct:   20 SEGVSDMLRTQKLTPGEAAPQLWAETGHWPCPRREPGDKIQAITFDLDDTLFPVMPPILRALE 82
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig900.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DGV2_HETAK9.260e-39100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig900contigH-akashiwo_Contig900:212420..213609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size189
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388034.4410172-UTR-H-akashiwo_Contig900:212419..2124371681388034.4410172-UTR-H-akashiwo_Contig900:212419..212437Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig900 212420..212437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388034.4527059-CDS-H-akashiwo_Contig900:212437..2125361681388034.4527059-CDS-H-akashiwo_Contig900:212437..212536Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig900 212438..212536 +
1681388034.4628534-CDS-H-akashiwo_Contig900:213537..2136091681388034.4628534-CDS-H-akashiwo_Contig900:213537..213609Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig900 213538..213609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig900.5.1prot_H-akashiwo_Contig900.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig900 212438..213609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig900.5.1

>prot_H-akashiwo_Contig900.5.1 ID=prot_H-akashiwo_Contig900.5.1|Name=mRNA_H-akashiwo_Contig900.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=57bp
MLRTQKLTPGEAAPQLWAETGHWPCPRREPGDKIQAITFDLDDTLFPVMP
PILRALE
back to top

mRNA from alignment at H-akashiwo_Contig900:212420..213609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig900.5.1 ID=mRNA_H-akashiwo_Contig900.5.1|Name=mRNA_H-akashiwo_Contig900.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1190bp|location=Sequence derived from alignment at H-akashiwo_Contig900:212420..213609+ (Heterosigma akashiwo CCMP452)
AGTGAAGGGGTGAGCGACATGCTCCGAACCCAGAAGCTGACGCCAGGCGA
AGCAGCACCACAGCTTTGGGCGGAGACTGGGCATTGGCCGTGCCCTAGAC
GTGAACCTGGGGATAAGGTAGGCTTTCACACTCGTCTTCTTCACATTTCT
TCTTCATATTTGCCTAACATCTCCTGGGAAATATGTTGTGTGACAAAGGG
GAGTGCCCTTGTACCCTCTTTCCGCTTAATTTTTGCAGCAGGTTGTGGTA
GAGGTTCACTATTGCTGCTAGCCATATAATCATAGATTAAGGGCCCTTTT
CTAAAAATGTAATGCATGTAAAAATTGTTGAGAGATTTTTGTTTGTAATA
TTGATGTCGAACGCTGCTGCACGTTCGAATCTGATATTGATAACTGGAAG
TCTATAATATATAAAACAAGCCGGCGATACCAACTTCGGATTCAAAGTAG
GAGTCGGCATCTGCGGCTTGTTATACCAAATCGCCAACATGGAGTCCAAA
CAACTTGCAGCAGCTGGGGAACGGCGATTAAAGGCAATAATGATGGCGCG
GCGACAGGCCCATCCCGTGAGGGCTAGGCGGCCGTAGCACGCAAAATGCT
GCGGGAGTAGCTACCCAGAGAAGTAATTCATGTAGCAAACAGTTCCATAT
ATATCTGTGTATATCTAGTTATCCAAAAGTTTAGACTTTCATCAATGAGA
TGTAAGACCACCACCAGGGGGGCTGGGCTATAGGTAAAAGACGTTAGCCC
AGTCTCATGTTTCACGACCAACCATCAAGGATTCAAGGCCAGGGCTATAA
ATACTGCTGTAGCGCATGGAATACAAGATCATGAAACAACTATATAAAGT
GTGATTACAATATTCAATAATGTATGTTGCAGCCCAAATATAATATCACC
ATCATCTGATCTTGATCATAAATAAATGTTCTGGTGTTGTTATTTTTATC
TTGCGCATACACCACCACCACACTCAGTGTGTGCAGGTGTGGCATCAACA
GTTGGTTTCTATTAGTTTTCAGCAAAAGTGAAGCCTGCAAAGTTCGTTAC
TGTTATATATATATATATATATATATATATATATATATAATATACTACTT
ATGTACTGTTTGTTTTAGATCCAGGCAATAACCTTTGATCTGGACGACAC
TCTTTTTCCAGTAATGCCTCCCATACTGCGAGCTCTTGAG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig900:212420..213609+

>mRNA_H-akashiwo_Contig900.5.1 ID=mRNA_H-akashiwo_Contig900.5.1|Name=mRNA_H-akashiwo_Contig900.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=171bp|location=Sequence derived from alignment at H-akashiwo_Contig900:212420..213609+ (Heterosigma akashiwo CCMP452)
ATGCTCCGAACCCAGAAGCTGACGCCAGGCGAAGCAGCACCACAGCTTTG
GGCGGAGACTGGGCATTGGCCGTGCCCTAGACGTGAACCTGGGGATAAGA
TCCAGGCAATAACCTTTGATCTGGACGACACTCTTTTTCCAGTAATGCCT
CCCATACTGCGAGCTCTTGAG
back to top