mRNA_H-akashiwo_Contig9.92.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.92.1
Unique NamemRNA_H-akashiwo_Contig9.92.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A7S3XWD7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWD7_HETAK)

HSP 1 Score: 206 bits (523), Expect = 5.460e-60
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 324
            SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP
Sbjct:  157 SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 264
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A7S3XWC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWC8_HETAK)

HSP 1 Score: 206 bits (523), Expect = 8.630e-60
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 
Query:    1 SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 324
            SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP
Sbjct:  157 SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 264
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: D7FPK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK9_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 1.310e-26
Identity = 58/102 (56.86%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:   19 ALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 324
            ALA+AS+AQVHR  L DG+E V+KVQH  V+ L LED+RNI  +V +VA+ E ++DFR IM+EWT+   +ELDF  EA+NL R+ AAM+RSG +V +P L+P
Sbjct:  182 ALASASVAQVHRCKLKDGREAVIKVQHRRVRTLFLEDLRNISRLVRMVAWAEKDYDFRPIMNEWTKESYKELDFVCEAKNLHRIGAAMKRSGLDVIVPELIP 283
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A6H5KBB7_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB7_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.320e-26
Identity = 59/102 (57.84%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:   19 ALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 324
            ALA+AS+AQVHR  L DG+E V+KVQH  V+ L LED+RNI  +V +VA+ E ++DFR IM+EWT+   +ELDF  EA+NL R+ AAM+RSG +V +P LVP
Sbjct:  620 ALASASVAQVHRCKLKDGREAVIKVQHRRVRKLFLEDLRNISRLVRMVAWAEKDYDFRPIMNEWTKESYKELDFVCEAKNLHRIGAAMKRSGLDVIVPELVP 721
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A835ZC02_9STRA (Beta-lactamase/transpeptidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC02_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.400e-25
Identity = 57/107 (53.27%), Postives = 77/107 (71.96%), Query Frame = 1 
Query:    4 SFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 324
            S  + ALA+AS+AQVHR TL DG  +VVK QH +VQ LML D+ +I  I  +VA+ +P+++F+ I +EWTR VR+ELDF  EA+NL  +  AM  SG +V+IP LVP
Sbjct:  132 SVSEKALASASVAQVHRGTLHDGTAIVVKAQHADVQRLMLSDLSDIMTIARLVAWADPQYNFKPICEEWTREVRKELDFNFEADNLVCLRRAMADSGLDVKIPELVP 238
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A9UTH4_MONBE (Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UTH4_MONBE)

HSP 1 Score: 101 bits (252), Expect = 7.860e-24
Identity = 53/102 (51.96%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    7 FEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIP 312
            FED ALA+ASIAQVHRATL  GQ+VV KVQH  +Q +M  D++N+ +IV  VA+F+P +DFR ++DEW++   +ELDFR E  + +RV A M  +  +V +P
Sbjct:  103 FEDVALASASIAQVHRATLKTGQQVVCKVQHRNIQTIMKHDLQNLFVIVDWVAYFDPSYDFRPVLDEWSKVAVKELDFRNEMLSSERVRANMADAKLDVIVP 204
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: UPI000C1D8CD0 (uncharacterized protein LOC111398648 n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D8CD0)

HSP 1 Score: 103 bits (256), Expect = 2.240e-23
Identity = 52/88 (59.09%), Postives = 68/88 (77.27%), Query Frame = 1 
Query:    7 FEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRV 270
            FED ALA ASIAQVHRATL DGQEVVVKVQH  ++ ++LED++N + IV  +A+ EP++DF  +MDEW +   +ELDF  EAEN ++V
Sbjct:  121 FEDIALATASIAQVHRATLRDGQEVVVKVQHDGIKEVILEDLKNAKSIVDWIAWAEPQYDFNPVMDEWCKEAPKELDFNHEAENTRKV 208
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A7S4CTW3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CTW3_9EUGL)

HSP 1 Score: 102 bits (254), Expect = 4.200e-23
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = 1 
Query:    7 FEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQNVEIPRLVP 324
            F++ ALAAASIAQVH A L DG +VVVKVQH  V  LM++D+ ++  IV  VA+ EP++DF  +++E  + V+ ELDF  E ENLQR   AM  SG NV IP+ +P
Sbjct:  315 FQETALAAASIAQVHMARLKDGTKVVVKVQHHRVLELMMDDLSSLWTIVRFVAWAEPQYDFTTVIEELVKHVKLELDFHFEVENLQRAGKAMAASGLNVIIPKPIP 420
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A4D9D1F3_9STRA (FYVE-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1F3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.910e-23
Identity = 50/106 (47.17%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    7 FEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAM-QRSGQNVEIPRLV 321
            FE  ALA+ASIAQVHRA   DG +VVVKVQHP+V  L+  D+RNI +I+T++ + EP++DF ++  EW++ VR+ELDF++E +NL+  +  + ++SG +  +P+++
Sbjct:  498 FESEALASASIAQVHRARRKDGTDVVVKVQHPDVARLLSIDLRNIVVILTLIGWIEPDYDFSMVAREWSKEVRKELDFKIEGDNLRMAYEGIAKKSGLDAVVPQVL 603
[Close]
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Match: A0A835QN00_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835QN00_VANPL)

HSP 1 Score: 100 bits (249), Expect = 1.990e-22
Identity = 52/90 (57.78%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:    1 SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLIVTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRV 270
            SSF+   LA ASIAQVHRATL DGQEVVVKVQH  ++ ++LED++N + IV  +A+ EP++DF  ++DEW R   +ELDF  EAEN +RV
Sbjct:  236 SSFDGKPLATASIAQVHRATLKDGQEVVVKVQHEGIKDIILEDLKNAKAIVDWIAWAEPQYDFSQMIDEWCREAPKELDFNHEAENTRRV 325
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XWD7_HETAK5.460e-60100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3XWC8_HETAK8.630e-60100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FPK9_ECTSI1.310e-2656.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBB7_9PHAE1.320e-2657.84FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZC02_9STRA5.400e-2553.27Beta-lactamase/transpeptidase-like protein n=1 Tax... [more]
A9UTH4_MONBE7.860e-2451.96Predicted protein (Fragment) n=1 Tax=Monosiga brev... [more]
UPI000C1D8CD02.240e-2359.09uncharacterized protein LOC111398648 n=1 Tax=Olea ... [more]
A0A7S4CTW3_9EUGL4.200e-2352.83Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A4D9D1F3_9STRA7.910e-2347.17FYVE-type domain-containing protein n=2 Tax=Monodo... [more]
A0A835QN00_VANPL1.990e-2257.78Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:6425784..6428051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FPK9
PFAMsABC1,Beta-lactamase,WaaY
Model size325
Max annot lvl2759|Eukaryota
KEGG koko:K08869,ko:K10779
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.14e-27
EggNOG OGsCOG0661@1|root,KOG1235@2759|Eukaryota
EC3.6.4.12
Descriptionregulation of tocopherol cyclase activity
Cds size324
COG categoryE
BRITEko00000,ko01000,ko01001,ko03000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388032.5507402-CDS-H-akashiwo_Contig9:6425783..64258281681388032.5507402-CDS-H-akashiwo_Contig9:6425783..6425828Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 6425784..6425828 +
1681388032.5622559-CDS-H-akashiwo_Contig9:6427588..64277351681388032.5622559-CDS-H-akashiwo_Contig9:6427588..6427735Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 6427589..6427735 +
1681388032.5727582-CDS-H-akashiwo_Contig9:6427918..64280501681388032.5727582-CDS-H-akashiwo_Contig9:6427918..6428050Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 6427919..6428050 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.92.1prot_H-akashiwo_Contig9.92.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 6425784..6428050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.92.1

>prot_H-akashiwo_Contig9.92.1 ID=prot_H-akashiwo_Contig9.92.1|Name=mRNA_H-akashiwo_Contig9.92.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=108bp
SSFEDAALAAASIAQVHRATLPDGQEVVVKVQHPEVQFLMLEDIRNIRLI
VTVVAFFEPEFDFRVIMDEWTRGVRRELDFRVEAENLQRVHAAMQRSGQN
VEIPRLVP
back to top

mRNA from alignment at H-akashiwo_Contig9:6425784..6428051+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.92.1 ID=mRNA_H-akashiwo_Contig9.92.1|Name=mRNA_H-akashiwo_Contig9.92.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2268bp|location=Sequence derived from alignment at H-akashiwo_Contig9:6425784..6428051+ (Heterosigma akashiwo CCMP452)
AGCAGCTTCGAGGATGCCGCCTTGGCCGCGGCGTCCATTGCTCAGGTGAA
AAGGGGAAAAAAAAAAACGGCCAGGCGCAACCCCCCCCCCCCACACACAC
ACACACATTGTACCCTAAGTGGACTTGCGCTCCCTTGTTCATTTTATTAT
ATATACTAAACACAAAGGGGGTTCGTTTTTTCGAGGGAAGAAAACACCCT
CTGATCGTTGTTGACCCAAAACAATAGATCAGCTCTCAGAGAATATAAAG
GACGCATCATTATATATATTTGGGAAGAGCATTTTTTTTTTGTCTAAGTT
TTGTCCCATGCAATGTGCTCCTCTCACTTTCTGAGCCACAACCAATGTCT
TCTTGCACGTGCCCTGGCTTCTGAGTACTTTGACAGACAGCGTTTCGCTA
GTGACAAGCGGGAGCTCCACCTGCGCGAAGTCCTACATACTCTGTTGTGC
CCTTTGGCCCAGATCCAGTCTTTCGGTTGTCTCATCCGTTGGCGCTTCCT
CCGACATCCCACTACCATGATCAGTGCATCTGTCTCCACCCTGCGAGTCG
AGGAAGTTCCCATAGACATGGTCAGTCTCCCTCTAGTTTCGAAATACTAG
GTACTTCTCGCCATGCCGTTTATGGTTTTCGAGTCGCGAGGAATATCGAC
TCTCGACTCTACGACCAGCCTCCGAGCACTGGCTATTGCTCGTTTTCAAC
GCTGTCAGTTACGGATGCAACTGCAACGCCTAAACACGAGGACGATTCCG
TGAAACGCCCCTGAATGTTATCAATCATGATCAACACATCCAGAGTAGGT
CTCCGACCGTACCGGACAAGCCCGAAAATACTCTCAAGGATAATTcCGAA
GAATTTTTCCAGGAAAGCGCCTCGCCACGGCAAACGGACAAAGCGGAGCT
CATCAAGAGTCGGGAGCTGGGTTCGAACCCTCGCCTCCAGAGCCCCCGCC
TGGGAAAGTCCGAAAACCGATCGACTCGTCGGCTAAGCCAACGCGACCTT
GATACTCGCCCAAAAAGACCGGAGGAGGGGGGGGTGTGCAAATTGAGCTC
TGATGATTTGGCTTCCTTCTCCGCTTGCACCCTTCCCCGCCGTTCTTGAT
GTCAAAAATGCCCATCTCAAACGATGGTGTTCTTTTGGGACTAGAATGGT
CTTCTTCCCTAACCATGCTGACCCGTTCTTTTTAGGTACCGATCACCAAG
AACGCTTCCATGGATAGGGCCCTTACTTATATGATCCCCCAAAACACTTG
TATAGACTGGGCTCTGAATCTTCGGCTGCTAGACAGCAGCAGAAGGCCAT
GATGAAACATCATGTTCTAAACCCATGGAGTCGCAATTGCGCCCAAGATA
TAATTTGTATGTCATCTCAGTCATATTTTCCTAGGTGGGAGGAATCTCAA
CATTTACAGCTGTTGTATAATGAAAAATGAACAAAGTTTGGATAAATATA
TCTAAACTATAAATGTTAATGAAGCCTAACATCCCGACACACGAAACCCA
CCCCACCTCACATCAGAAACCCTGCCAGTTGGATGTCGAAAACCTGAGCA
CCAATGAAGGAGGCTCATATACATGGGGTATCGAGAATCTGGGCTTTCGA
GCATGCCCGCTATGGCGCAATGCCCAGCACTGGTACCAAGAACCGAGAGC
TCTCCAGTTCAATCCTCCTGGTGTGCGTTTTGGACGGAAAACGACCCCAA
CCCCACCCCACCACCGATCGGAAGGAACCCACAGCCACAACCTCCGCTCC
ACCTGAGTACAGCGCCTCCGACTACTTCCGCCGCCGCCGCCGCCCAACAA
CGCAGGTGCACCGCGCGACGCTGCCGGACGGGCAGGAGGTGGTGGTGAAG
GTGCAGCACCCGGAGGTCCAGTTCCTCATGCTGGAGGACATCCGCAACAT
CCGGCTGATCGTCACCGTGGTGGCGTTCTTCGAGCCGGAGTTCGACTTCA
GGGTGAGGGGGGGGGGGCAGAAGGGTGGCAATATAATTCACCTATGAATG
TGGTCCTATAAATTTGGTACATTCGGCTAAAGGCCTTTTGGCCTTCTACA
CACAGCATCCAACCTTCGACGAAGAGCAGGGAGTTGATTCAGCCAGTGCC
CCTCGTGCCCCCCCCTTGAAACCCCACGCATGCAGGTGATCATGGACGAG
TGGACCCGGGGGGTGCGTCGGGAGCTGGACTTCCGCGTCGAGGCCGAGAA
TCTGCAGCGGGTGCACGCCGCGATGCAGCGCAGCGGGCAGAACGTGGAGA
TCCCGCGGCTGGTCCCCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig9:6425784..6428051+

>mRNA_H-akashiwo_Contig9.92.1 ID=mRNA_H-akashiwo_Contig9.92.1|Name=mRNA_H-akashiwo_Contig9.92.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=324bp|location=Sequence derived from alignment at H-akashiwo_Contig9:6425784..6428051+ (Heterosigma akashiwo CCMP452)
AGCAGCTTCGAGGATGCCGCCTTGGCCGCGGCGTCCATTGCTCAGGTGCA
CCGCGCGACGCTGCCGGACGGGCAGGAGGTGGTGGTGAAGGTGCAGCACC
CGGAGGTCCAGTTCCTCATGCTGGAGGACATCCGCAACATCCGGCTGATC
GTCACCGTGGTGGCGTTCTTCGAGCCGGAGTTCGACTTCAGGGTGATCAT
GGACGAGTGGACCCGGGGGGTGCGTCGGGAGCTGGACTTCCGCGTCGAGG
CCGAGAATCTGCAGCGGGTGCACGCCGCGATGCAGCGCAGCGGGCAGAAC
GTGGAGATCCCGCGGCTGGTCCCC
back to top