mRNA_H-akashiwo_Contig9.90.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.90.1
Unique NamemRNA_H-akashiwo_Contig9.90.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:6210459..6210890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons2
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.5597947-CDS-H-akashiwo_Contig9:6210458..62106421681388029.5597947-CDS-H-akashiwo_Contig9:6210458..6210642Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 6210459..6210642 -
1681388029.5709531-CDS-H-akashiwo_Contig9:6210690..62108901681388029.5709531-CDS-H-akashiwo_Contig9:6210690..6210890Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 6210691..6210890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.90.1prot_H-akashiwo_Contig9.90.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 6210459..6210890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.90.1

>prot_H-akashiwo_Contig9.90.1 ID=prot_H-akashiwo_Contig9.90.1|Name=mRNA_H-akashiwo_Contig9.90.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=128bp
ANHPANGGHICHPRTTSSRTQAPRIHRPTPQLSISPRGSPAFAVICPRGQ
LTPPRLRVSPSRSFVLWVICPRGHLSSRSSALAVICPRGPLPSRLSSALA
VSLEQVRLLTAPTGTTFPRRGRACPSQ*
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mRNA from alignment at H-akashiwo_Contig9:6210459..6210890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.90.1 ID=mRNA_H-akashiwo_Contig9.90.1|Name=mRNA_H-akashiwo_Contig9.90.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig9:6210459..6210890- (Heterosigma akashiwo CCMP452)
GCAAATCACCCCGCAAACGGTGGTCATATTTGTCACCCTAGAACCACTTC
TTCGCGTACTCAAGCTCCAAGAATACACCGCCCGACACCTCAGCTCAGCA
TCTCGCCCCGCGGGTCACCTGCCTTCGCGGTCATCTGTCCTCGCGGTCAG
CTCACACCTCCTCGGCTCCGCGTGTCGCCCTCGCGGTCATTTGTCCTCTG
GTCATCTGCCCTCGCGGTCATTTGTCCTCGCGGTCATTTGTCCTCAAGGG
TCATCTGCCCTCGCGGTCATTTGTCCTCGCGGTCATCTGCTCTCGCGGTC
ATTTGTCCTCGCGGTCCTCTGCCCTCGCGGTTATCATCTGCCCTCGCGGT
CAGCTTAGAGCAAGTCCGGTTACTCACAGCCCCCACTGGGACAACCTTTC
CTAGGCGAGGAAGGGCGTGCCCGAGTCAATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:6210459..6210890-

>mRNA_H-akashiwo_Contig9.90.1 ID=mRNA_H-akashiwo_Contig9.90.1|Name=mRNA_H-akashiwo_Contig9.90.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=384bp|location=Sequence derived from alignment at H-akashiwo_Contig9:6210459..6210890- (Heterosigma akashiwo CCMP452)
GCAAATCACCCCGCAAACGGTGGTCATATTTGTCACCCTAGAACCACTTC
TTCGCGTACTCAAGCTCCAAGAATACACCGCCCGACACCTCAGCTCAGCA
TCTCGCCCCGCGGGTCACCTGCCTTCGCGGTCATCTGTCCTCGCGGTCAG
CTCACACCTCCTCGGCTCCGCGTGTCGCCCTCGCGGTCATTTGTCCTCTG
GGTCATCTGCCCTCGCGGTCATTTGTCCTCGCGGTCATCTGCTCTCGCGG
TCATTTGTCCTCGCGGTCCTCTGCCCTCGCGGTTATCATCTGCCCTCGCG
GTCAGCTTAGAGCAAGTCCGGTTACTCACAGCCCCCACTGGGACAACCTT
TCCTAGGCGAGGAAGGGCGTGCCCGAGTCAATGA
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