mRNA_H-akashiwo_Contig9.87.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.87.1
Unique NamemRNA_H-akashiwo_Contig9.87.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.87.1 vs. uniprot
Match: A0A7S3XZ23_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ23_HETAK)

HSP 1 Score: 136 bits (342), Expect = 1.830e-35
Identity = 72/75 (96.00%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  935 RAQAVGPAPGQRGASWASVVRGGGGRQPATRPEGGEAELGSPGVHVVGTALMAHGASGASAPRXXDREAARAQDV 1159
            RAQAVGPAPGQRGASWASVVRGGGGRQPATRPEGGEAELGSPGVHVVGTALMAHGASGASAPR  DRE ARAQDV
Sbjct:    1 RAQAVGPAPGQRGASWASVVRGGGGRQPATRPEGGEAELGSPGVHVVGTALMAHGASGASAPRGGDREPARAQDV 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XZ23_HETAK1.830e-3596.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:5996407..5997676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1271
Hectar predicted targeting categoryother localisation
Exons1
Cds size738
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.9303005-UTR-H-akashiwo_Contig9:5996406..59969381681388029.9303005-UTR-H-akashiwo_Contig9:5996406..5996938Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 5996407..5996938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.9427962-CDS-H-akashiwo_Contig9:5996938..59976761681388029.9427962-CDS-H-akashiwo_Contig9:5996938..5997676Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 5996939..5997676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.87.1prot_H-akashiwo_Contig9.87.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 5996939..5997676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.87.1

>prot_H-akashiwo_Contig9.87.1 ID=prot_H-akashiwo_Contig9.87.1|Name=mRNA_H-akashiwo_Contig9.87.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=246bp
MQGSSRRRVSSSTAKVSQGELQEVETAVRRKSSRTGGDTGSRGVHSSMTT
GRVARGKTGQRGPGCHQALRSTGGGSRGECSLHGGRPLQDSHSGRGAQAK
GAALAPRGAPGASAQGEQGRLPAARSGGAEHGSHRAQAVGPAPGQRGASW
ASVVRGGGGRQPATRPEGGEAELGSPGVHVVGTALMAHGASGASAPRGGD
REAARAQDVGAAGLRGPFSQVEGAAPMLRGASRAPALEGGGRQLAV
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mRNA from alignment at H-akashiwo_Contig9:5996407..5997676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.87.1 ID=mRNA_H-akashiwo_Contig9.87.1|Name=mRNA_H-akashiwo_Contig9.87.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1270bp|location=Sequence derived from alignment at H-akashiwo_Contig9:5996407..5997676+ (Heterosigma akashiwo CCMP452)
TTTTCTCCCGGAAGATCTTGTATATGTTTGTGTATAGCTGCACCCGGATA
TTCTTTCATATCCGGTGACAGCAGTGGCCTAATAATGCCTTAAATACGTC
AATGACTAACCGCTTTGATAGTATACCCCCCTGGGCATAACCTGTGCCGA
GTCTGTGTTCCACAGTGTTTCAACACTGTCACCGGATATCAAAAGAAGGG
GGGAAATTCGCTTCGCTGTAAAAAAAAAATGCAAGCGATGGAACTTGCTG
CTGCTCCTAATGGAAAGACGGGCGGCAGGAGGATATGTTTTCGCCACATA
AAAATGCTGGCGATGGAAGATCGAAAAAGATGGCAGTACGAAGTCACGGG
AATTCGGCTGTTTCATCTGTCGTGGAAAACACCTGCAAAGGTTTTGCCCG
CAACTCAAGCTGGGCAAGTCGATCAGATGCTGGAAGTGTGGGGATCATAG
ACATCTCTCACACGAATGCGCCAGACCACGACGAAAAAGGTGGAAAAGGA
AAGGCCGTCTAAGTGTCGGTTGGTCTGGTGGCATGCAGGGCTCCTCTCGA
AGAAGAGTCAGTTCGTCTACGGCAAAGGTCAGCCAAGGAGAACTACAGGA
GGTGGAGACGGCGGTGCGCCgCAAGTCTTCACGCACCGGCGGCGATACCG
GCAGCCGCGGTGTGCATTCCAGCATGACAACAGGAAGGGTTGCTCGCGGG
AAGACCGGCCAGCGGGGACCTGGGTGCCATCAAGCACTCCGCAGCACCGG
CGGCGGCAGCCGCGGTGAGTGTTCACTTCATGGTGGACGACCCCTCCAGG
ACTCTCATTCTGGAAGGGGTGCGCAGGCGAAGGGCGCAGCCCTCGCGCCG
CGCGGAGCCCCCGGGGCATCGGCCCAGGGGGAGCAAGGACGCCTGCCGGC
CGCCCGCAGCGGCGGGGCCGAGCACGGCAGTCACAGAGCGCAGGCGGTGG
GCCCGGCCCCCGGCCAGCGCGGAGCCTCCTGGGCGTCAGTAGTCCGGGGA
GGCGGAGGGCGCCAGCCAGCTACCAGACCCGAGGGTGGCGAGGCTGAGCT
GGGCAGCCCCGGTGTGCACGTGGTGGGCACGGCCCTCATGGCACACGGAG
CCTCCGGGGCATCAGCCCCGAGAGGTGGCGACCGCGAGGCGGCACGCGCT
CAGGATGTCGGCGCTGCCGGGCTGCGCGGCCCATTTTCGCAGGTGGAGGG
CGCAGCCCCCATGCTGCGTGGAGCCTCCAGGGCACCAGCCTTGGAGGGTG
GAGGGCGTCAGCTGGCCGTC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:5996407..5997676+

>mRNA_H-akashiwo_Contig9.87.1 ID=mRNA_H-akashiwo_Contig9.87.1|Name=mRNA_H-akashiwo_Contig9.87.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=738bp|location=Sequence derived from alignment at H-akashiwo_Contig9:5996407..5997676+ (Heterosigma akashiwo CCMP452)
ATGCAGGGCTCCTCTCGAAGAAGAGTCAGTTCGTCTACGGCAAAGGTCAG
CCAAGGAGAACTACAGGAGGTGGAGACGGCGGTGCGCCgCAAGTCTTCAC
GCACCGGCGGCGATACCGGCAGCCGCGGTGTGCATTCCAGCATGACAACA
GGAAGGGTTGCTCGCGGGAAGACCGGCCAGCGGGGACCTGGGTGCCATCA
AGCACTCCGCAGCACCGGCGGCGGCAGCCGCGGTGAGTGTTCACTTCATG
GTGGACGACCCCTCCAGGACTCTCATTCTGGAAGGGGTGCGCAGGCGAAG
GGCGCAGCCCTCGCGCCGCGCGGAGCCCCCGGGGCATCGGCCCAGGGGGA
GCAAGGACGCCTGCCGGCCGCCCGCAGCGGCGGGGCCGAGCACGGCAGTC
ACAGAGCGCAGGCGGTGGGCCCGGCCCCCGGCCAGCGCGGAGCCTCCTGG
GCGTCAGTAGTCCGGGGAGGCGGAGGGCGCCAGCCAGCTACCAGACCCGA
GGGTGGCGAGGCTGAGCTGGGCAGCCCCGGTGTGCACGTGGTGGGCACGG
CCCTCATGGCACACGGAGCCTCCGGGGCATCAGCCCCGAGAGGTGGCGAC
CGCGAGGCGGCACGCGCTCAGGATGTCGGCGCTGCCGGGCTGCGCGGCCC
ATTTTCGCAGGTGGAGGGCGCAGCCCCCATGCTGCGTGGAGCCTCCAGGG
CACCAGCCTTGGAGGGTGGAGGGCGTCAGCTGGCCGTC
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