mRNA_H-akashiwo_Contig9.84.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.84.1
Unique NamemRNA_H-akashiwo_Contig9.84.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.84.1 vs. uniprot
Match: A0A7S3XYI5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYI5_HETAK)

HSP 1 Score: 120 bits (301), Expect = 6.380e-31
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 VTVADIYVALKLKAIIFDEQKLKKDSPCVARWLDTCLNQPAFKEVIGAQGGSAKKAGKEE 180
            VTVADIYVALKLKAIIFDEQKLKKDSPCVARWLDTCLNQPAFKEVIGAQGGSAKKAGKEE
Sbjct:  144 VTVADIYVALKLKAIIFDEQKLKKDSPCVARWLDTCLNQPAFKEVIGAQGGSAKKAGKEE 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XYI5_HETAK6.380e-31100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:5900801..5900981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G6C4
Preferred nameEEF1G
PFAMsAnticodon_1,EF1G,GST_C,GST_N,tRNA-synt_1
Model size181
Max annot lvl2759|Eukaryota
KEGG rclassRC00055,RC00523
KEGG koko:K01872,ko:K01873,ko:K03233,ko:K15439
KEGG ReactionR03038,R03665
KEGG Pathwayko00970,ko05134,map00970,map05134
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0001047,GO:0001067,GO:0002181,GO:0002182,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003723,GO:0003746,GO:0003824,GO:0004364,GO:0004812,GO:0004832,GO:0005085,GO:0005488,GO:0005507,GO:0005509,GO:0005515,GO:0005543,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005773,GO:0005829,GO:0005840,GO:0005853,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006355,GO:0006357,GO:0006399,GO:0006412,GO:0006414,GO:0006417,GO:0006418,GO:0006438,GO:0006449,GO:0006518,GO:0006520,GO:0006575,GO:0006725,GO:0006749,GO:0006790,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0008289,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016070,GO:0016740,GO:0016765,GO:0016874,GO:0016875,GO:0019219,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0022613,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0034660,GO:0035770,GO:0036464,GO:0042221,GO:0042254,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043244,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051128,GO:0051171,GO:0051173,GO:0051186,GO:0051246,GO:0051252,GO:0051254,GO:0051704,GO:0051707,GO:0055044,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:0140110,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
Exons1
Evalue5.88e-05
EggNOG OGsCOG0625@1|root,KOG1627@1|root,KOG0867@2759|Eukaryota,KOG1627@2759|Eukaryota
Ec32 ortholog descriptioneukaryotic elongation factor-1 B gamma
Ec32 orthologEc-10_001330.1
EC6.1.1.7,6.1.1.9
Descriptiontranslation elongation factor activity
Cds size180
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03012,ko03016,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388032.33959-CDS-H-akashiwo_Contig9:5900800..59009801681388032.33959-CDS-H-akashiwo_Contig9:5900800..5900980Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 5900801..5900980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.84.1prot_H-akashiwo_Contig9.84.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 5900801..5900980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.84.1

>prot_H-akashiwo_Contig9.84.1 ID=prot_H-akashiwo_Contig9.84.1|Name=mRNA_H-akashiwo_Contig9.84.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
VTVADIYVALKLKAIIFDEQKLKKDSPCVARWLDTCLNQPAFKEVIGAQG
GSAKKAGKEE
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mRNA from alignment at H-akashiwo_Contig9:5900801..5900981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.84.1 ID=mRNA_H-akashiwo_Contig9.84.1|Name=mRNA_H-akashiwo_Contig9.84.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=181bp|location=Sequence derived from alignment at H-akashiwo_Contig9:5900801..5900981+ (Heterosigma akashiwo CCMP452)
GTGACAGTTGCCGACATCTACGTTGCTCTGAAGCTGAAAGCTATCATCTT
TGATGAACAGAAGCTGAAGAAAGACTCTCCTTGCGTGGCACGCTGGCTTG
ATACCTGTTTGAATCAGCCAGCCTTCAAGGAGGTGATTGGTGCTCAGGGC
GGCAGCGCAAAAAAGGCCGGGAAGGAGGAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:5900801..5900981+

>mRNA_H-akashiwo_Contig9.84.1 ID=mRNA_H-akashiwo_Contig9.84.1|Name=mRNA_H-akashiwo_Contig9.84.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig9:5900801..5900981+ (Heterosigma akashiwo CCMP452)
GTGACAGTTGCCGACATCTACGTTGCTCTGAAGCTGAAAGCTATCATCTT
TGATGAACAGAAGCTGAAGAAAGACTCTCCTTGCGTGGCACGCTGGCTTG
ATACCTGTTTGAATCAGCCAGCCTTCAAGGAGGTGATTGGTGCTCAGGGC
GGCAGCGCAAAAAAGGCCGGGAAGGAGGAA
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