mRNA_H-akashiwo_Contig9.51.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.51.1
Unique NamemRNA_H-akashiwo_Contig9.51.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A7S4D679_HETAK (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D679_HETAK)

HSP 1 Score: 101 bits (251), Expect = 2.330e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 ALGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPPLL 156
            ALGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPPLL
Sbjct:  270 ALGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPPLL 321
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A7S2USD9_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USD9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 7.360e-8
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    1 ALGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNEL 132
            ALGP ADY+VVN+SCPN  G   LQ+KG +  +V AA+ ARN++
Sbjct:  197 ALGPFADYIVVNISCPNIGGCTKLQEKGEMKKVVQAAMVARNKV 240
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: UPI001C47AD98 (quinone-dependent dihydroorotate dehydrogenase n=1 Tax=Erythrobacter sp. WH158 TaxID=2828328 RepID=UPI001C47AD98)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-7
Identity = 26/49 (53.06%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 LGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPP 150
            + P+A YL VNVS PN  G+ ALQD+G+L+S++DA +AAR+E+    PP
Sbjct:  160 MAPYASYLAVNVSSPNTPGLRALQDEGALSSLIDAVIAARDEVSTNTPP 208
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: UPI001FF650B0 (quinone-dependent dihydroorotate dehydrogenase n=1 Tax=Erythrobacter sp. F6033 TaxID=2926401 RepID=UPI001FF650B0)

HSP 1 Score: 54.7 bits (130), Expect = 2.540e-7
Identity = 25/49 (51.02%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    4 LGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPP 150
            + P+A YL VNVS PN  G+ ALQD+G+L +++DA +AAR+E+ +  PP
Sbjct:  160 MAPYASYLAVNVSSPNTPGLRALQDEGALTALIDAVIAARDEVTSAAPP 208
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A139AY32_GONPJ (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AY32_GONPJ)

HSP 1 Score: 52.8 bits (125), Expect = 1.240e-6
Identity = 24/51 (47.06%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    4 LGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPPLL 156
            +GP+ADY+V+NVSCPNQ G+ ++Q KG +  ++   + ARN     RPP+L
Sbjct:  281 MGPYADYVVLNVSCPNQHGITSMQRKGIMEGLMKEIIEARNATLPHRPPVL 331
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A7K4M3V3_9AVES (Dihydroorotate dehydrogenase (quinone), mitochondrial (Fragment) n=1 Tax=Crypturellus undulatus TaxID=48396 RepID=A0A7K4M3V3_9AVES)

HSP 1 Score: 52.4 bits (124), Expect = 1.590e-6
Identity = 28/50 (56.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 ALGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPP 150
            ALGP ADYLVVNVS PN  G+ ALQ +G L  ++   LA R+ LP  R P
Sbjct:  119 ALGPLADYLVVNVSSPNTPGLRALQGRGELRDLLSKVLAERDALPCERKP 168
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A448Z927_9STRA (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z927_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 2.320e-6
Identity = 25/43 (58.14%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    4 LGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNEL 132
            LGP+ADYLVVNVSCPN +G+ ALQ   SL  ++   L AR++L
Sbjct:  251 LGPYADYLVVNVSCPNLSGLRALQSASSLEELLGGCLEARDQL 293
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A1Y2ELQ6_9FUNG (Dihydroorotate dehydrogenase (quinone), mitochondrial n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2ELQ6_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 4.300e-6
Identity = 23/44 (52.27%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 LGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELP 135
            LG +AD++V+NVSCPN  G+ ALQ+K +L++++ A + AR ELP
Sbjct:  155 LGMYADFIVINVSCPNLPGLRALQEKDTLSNLLTAVINAREELP 198
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: A0A1Y1XN91_9FUNG (Dihydroorotate dehydrogenase (quinone), mitochondrial n=2 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y1XN91_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 4.300e-6
Identity = 22/44 (50.00%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 LGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELP 135
            LG +AD++V+NVSCPN  G+ ALQ+K +L ++++A + A+ ELP
Sbjct:  155 LGSYADFIVINVSCPNLPGLRALQEKDTLKNLLEAVIKAKEELP 198
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BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Match: UPI001C71442C (dihydroorotate dehydrogenase (quinone), mitochondrial-like n=3 Tax=Penaeus TaxID=133894 RepID=UPI001C71442C)

HSP 1 Score: 51.2 bits (121), Expect = 4.340e-6
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    7 GPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPP 150
            GP ADYLVVN+S PN  G+  LQ +G L  +VDA +AAR+ LP    P
Sbjct:  224 GPIADYLVVNISSPNTPGLRNLQHRGKLEKLVDAVVAARDNLPGSHKP 271
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.51.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4D679_HETAK2.330e-24100.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A7S2USD9_9STRA7.360e-856.82Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
UPI001C47AD981.350e-753.06quinone-dependent dihydroorotate dehydrogenase n=1... [more]
UPI001FF650B02.540e-751.02quinone-dependent dihydroorotate dehydrogenase n=1... [more]
A0A139AY32_GONPJ1.240e-647.06Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A7K4M3V3_9AVES1.590e-656.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A448Z927_9STRA2.320e-658.14Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A1Y2ELQ6_9FUNG4.300e-652.27Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
A0A1Y1XN91_9FUNG4.300e-650.00Dihydroorotate dehydrogenase (quinone), mitochondr... [more]
UPI001C71442C4.340e-654.17dihydroorotate dehydrogenase (quinone), mitochondr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:3378773..3380031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7070.TC011160-PA
Preferred nameDHODH
PFAMsDHO_dh
Model size157
Max annot lvl33208|Metazoa
KEGG rclassRC00051
KEGG koko:K00254
KEGG ReactionR01868
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00051
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0001101,GO:0003674,GO:0003824,GO:0004152,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005829,GO:0006139,GO:0006206,GO:0006207,GO:0006213,GO:0006725,GO:0006807,GO:0006810,GO:0006950,GO:0007275,GO:0007565,GO:0007584,GO:0007589,GO:0007595,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009116,GO:0009163,GO:0009410,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010181,GO:0010243,GO:0010821,GO:0010941,GO:0010942,GO:0014070,GO:0014074,GO:0016020,GO:0016491,GO:0016627,GO:0016635,GO:0018130,GO:0019438,GO:0019856,GO:0019866,GO:0022414,GO:0022603,GO:0030879,GO:0031000,GO:0031090,GO:0031667,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0033043,GO:0034404,GO:0034641,GO:0034654,GO:0036094,GO:0036270,GO:0036477,GO:0042221,GO:0042493,GO:0042594,GO:0042981,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043200,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044706,GO:0046112,GO:0046134,GO:0046483,GO:0046903,GO:0048037,GO:0048038,GO:0048039,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048732,GO:0048856,GO:0050662,GO:0050789,GO:0050793,GO:0050794,GO:0050878,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051704,GO:0055086,GO:0055114,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0072527,GO:0072528,GO:0090140,GO:0097159,GO:0097367,GO:0097458,GO:1901135,GO:1901137,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1901698,GO:1901700,GO:1903576
Exons3
Evalue9.64e-07
EggNOG OGsCOG0167@1|root,KOG1436@2759|Eukaryota,38BTB@33154|Opisthokonta,3BDAR@33208|Metazoa,3CRQM@33213|Bilateria,41WZB@6656|Arthropoda,3SID6@50557|Insecta
EC1.3.5.2
DescriptionBelongs to the dihydroorotate dehydrogenase family. Type 2 subfamily
Cds size156
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388031.2835886-CDS-H-akashiwo_Contig9:3378773..33788001681388031.2835886-CDS-H-akashiwo_Contig9:3378773..3378800Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3378774..3378800 -
1681388031.2951593-CDS-H-akashiwo_Contig9:3379049..33791241681388031.2951593-CDS-H-akashiwo_Contig9:3379049..3379124Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3379050..3379124 -
1681388031.3050358-CDS-H-akashiwo_Contig9:3379977..33800311681388031.3050358-CDS-H-akashiwo_Contig9:3379977..3380031Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 3379978..3380031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.51.1prot_H-akashiwo_Contig9.51.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 3378774..3380031 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.51.1

>prot_H-akashiwo_Contig9.51.1 ID=prot_H-akashiwo_Contig9.51.1|Name=mRNA_H-akashiwo_Contig9.51.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
ALGPHADYLVVNVSCPNQAGVAALQDKGSLASIVDAALAARNELPAPRPP
LL
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mRNA from alignment at H-akashiwo_Contig9:3378773..3380031-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.51.1 ID=mRNA_H-akashiwo_Contig9.51.1|Name=mRNA_H-akashiwo_Contig9.51.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1259bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3378773..3380031- (Heterosigma akashiwo CCMP452)
GCCCTGGGGCCGCACGCAGACTACCTGGTGGTCAATGTCTCCTGCCCCAA
CCAGGTGTGTGTGTTTGAGGCCGGGGGCGCCGGTCGGCACACACCACCCG
CCTCTTTGTTGCTCCCCGGGCGGTGGGACGGCGTGCGCCCGGCCCGCCTG
ATCTCTGGCGCGGCGGGTTGGGTTCTCCGGGGCCGGCCGCCGCGGCGGCG
GCCCGGAGGAGCGGGAGACCGCGGCCTTGGGGGCCGCGGCGCCGAGAGGA
GGAGGAGCAAGGAGGGCGCTGCTGAGCGGGGGCGGCCCCGGGCGGCAACG
GCGGCGTGGGGAGGCAAGGAGGAAGAACAGTTCGGCGTGCGAACGGCCGG
GACGAAGCGCGGCGTGCGCGCGGGCAGAGGAACACCACCGGGCGGCCACC
GTGCTCAGCGAAGTGTCTCTGGGTGTTGCTGTCGGGGGTCGGAGAGGAGG
AGTATCGGTGTCTCCTCCTAGACGAAGGTGATCTCGTTTTCTTCTCTGGT
GGGGGAGGAACTGGCACCCTGTGCACAGGCTCCCCTCGCTTCTTCTGCCG
CCTCGCCCATAACACCCCGTTCTTTGCCCACCTCTGGGGTTACCAAGGAG
TAAGAAGACTTTGTTGATTATATCAAAATTTAAATAATGGAACGGTGCAA
AAGGTATGGAATCTGAATGACCGCAGACTACGGCAGATTGAATTGCTGTA
GTTAACCTTAGACCATTTATACTGGATATACATTTAGAAGATGTATTGTA
ATTAAAATCCTCTTCTTTACAAACCTACCTGCCCCCAGTGGTATTCATCT
TTCTTCCCATCCTCCATACCTTTTGCGCTATACTCTATTTTGACGATCAA
AAACTCACCCCCCAAAAAGAAAAGGTACGCCCCCCCGCCGTCCCGCCCGC
CCACCAGGCCGGCGTTGCAGCGCTGCAAGACAAAGGGTCGCTGGCCTCCA
TCGTGGACGCCGCCCTCGCCGCGCGCAACGAGGTGGCGGCAGGGCGGGGG
CTCCCCTGCTGCGTCCGCCGCCGCCGCGGCAGCTGAAAACATCGCCCCAT
CTCCTCCCTTTTGGAAAACGTGGCGGGGGAGGGCATGCGACAGAACGCGG
CCCAGCGTTCTCTCACGCCGCGCGCCCAGGATTGCGTGAGCCCCAGCACA
ACACGCGTGCGCGCACGCCTCGCTCTCCCCTTTGCCCCTCCCCCCCCACC
GGGCCCTGCCCGGCCCGGCCCCGCCCCGCAGCTGCCGGCCCCGCGGCCGC
CGTTGCTGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:3378773..3380031-

>mRNA_H-akashiwo_Contig9.51.1 ID=mRNA_H-akashiwo_Contig9.51.1|Name=mRNA_H-akashiwo_Contig9.51.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig9:3378773..3380031- (Heterosigma akashiwo CCMP452)
GCCCTGGGGCCGCACGCAGACTACCTGGTGGTCAATGTCTCCTGCCCCAA
CCAGGCCGGCGTTGCAGCGCTGCAAGACAAAGGGTCGCTGGCCTCCATCG
TGGACGCCGCCCTCGCCGCGCGCAACGAGCTGCCGGCCCCGCGGCCGCCG
TTGCTG
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