mRNA_H-akashiwo_Contig9.40.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.40.1
Unique NamemRNA_H-akashiwo_Contig9.40.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:2833900..2834504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size606
Hectar predicted targeting categoryother localisation
Exons1
Cds size603
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.8531063-CDS-H-akashiwo_Contig9:2833899..28345021681388029.8531063-CDS-H-akashiwo_Contig9:2833899..2834502Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2833900..2834502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.40.1prot_H-akashiwo_Contig9.40.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 2833900..2834502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.40.1

>prot_H-akashiwo_Contig9.40.1 ID=prot_H-akashiwo_Contig9.40.1|Name=mRNA_H-akashiwo_Contig9.40.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=201bp
TSYYSIIKISPFQSLLVSTSCSKKKNTRTQGRYRQISKSAGKLQINKVSH
HHQNKMSFDLYTLNTDTMTHKKSCVMSPTPSTWSEQTSEHNRSPVPGPHI
WMLVSLMTFIITHPSKLIVLTASCTAPGLYLSASLPPPTFSLQSFSRTPH
PHCHPPPVGQPSRAPPCPWGCLWQRRWRPLPPPMPAAQHPAAQPPRHQAP
P
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mRNA from alignment at H-akashiwo_Contig9:2833900..2834504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.40.1 ID=mRNA_H-akashiwo_Contig9.40.1|Name=mRNA_H-akashiwo_Contig9.40.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=605bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2833900..2834504+ (Heterosigma akashiwo CCMP452)
ACGAGTTATTATAGCATCATCAAGATTTCCCCCTTTCAAAGCTTATTAGT
TTCAACCAGCTGCAGCAAAAAAAAAAACACTCGCACACAAGGAAGGTACA
GACAGATTTCCAAAAGTGCTGGCAAGCTGCAGATAAATAAAGTAAGCCAC
CACCACCAAAATAAAATGTCTTTCGACCTCTACACTTTGAATACTGATAC
TATGACACATAAGAAGAGCTGTGTAATGTCACCTACGCCATCCACATGGT
CTGAGCAAACAAGCGAGCACAATCGGTCCCCAGTTCCCGGTCCGCACATT
TGGATGCTGGTGTCTTTGATGACATTTATAATAACTCACCCTTCAAAACT
TATTGTCCTCACTGCATCTTGCACAGCTCCTGGGCTGTACCTTTCTGCTT
CTCTTCCACCTCCAACCTTCTCTCTCCAGTCGTTTTCTCGCACCCCGCAC
CCCCACTGCCATCCTCCTCCGGTGGGTCAGCCGTCTCGCGCCCCGCCTTG
TCCATGGGGATGCCTATGGCAGCGGCGGTGGCGGCCGCTGCCTCCTCCCA
TGCCGGCAGCTCAACACCCAGCCGCACAGCCTCCTCGGCACCAGGCTCCC
CCGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:2833900..2834504+

>mRNA_H-akashiwo_Contig9.40.1 ID=mRNA_H-akashiwo_Contig9.40.1|Name=mRNA_H-akashiwo_Contig9.40.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=603bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2833900..2834504+ (Heterosigma akashiwo CCMP452)
ACGAGTTATTATAGCATCATCAAGATTTCCCCCTTTCAAAGCTTATTAGT
TTCAACCAGCTGCAGCAAAAAAAAAAACACTCGCACACAAGGAAGGTACA
GACAGATTTCCAAAAGTGCTGGCAAGCTGCAGATAAATAAAGTAAGCCAC
CACCACCAAAATAAAATGTCTTTCGACCTCTACACTTTGAATACTGATAC
TATGACACATAAGAAGAGCTGTGTAATGTCACCTACGCCATCCACATGGT
CTGAGCAAACAAGCGAGCACAATCGGTCCCCAGTTCCCGGTCCGCACATT
TGGATGCTGGTGTCTTTGATGACATTTATAATAACTCACCCTTCAAAACT
TATTGTCCTCACTGCATCTTGCACAGCTCCTGGGCTGTACCTTTCTGCTT
CTCTTCCACCTCCAACCTTCTCTCTCCAGTCGTTTTCTCGCACCCCGCAC
CCCCACTGCCATCCTCCTCCGGTGGGTCAGCCGTCTCGCGCCCCGCCTTG
TCCATGGGGATGCCTATGGCAGCGGCGGTGGCGGCCGCTGCCTCCTCCCA
TGCCGGCAGCTCAACACCCAGCCGCACAGCCTCCTCGGCACCAGGCTCCC
CCG
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