mRNA_H-akashiwo_Contig9.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.36.1
Unique NamemRNA_H-akashiwo_Contig9.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:2545328..2545818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size493
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.8053913-CDS-H-akashiwo_Contig9:2545327..25456271681388029.8053913-CDS-H-akashiwo_Contig9:2545327..2545627Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2545328..2545627 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.8186624-UTR-H-akashiwo_Contig9:2545627..25458181681388029.8186624-UTR-H-akashiwo_Contig9:2545627..2545818Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig9 2545628..2545818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.36.1prot_H-akashiwo_Contig9.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 2545328..2545627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.36.1

>prot_H-akashiwo_Contig9.36.1 ID=prot_H-akashiwo_Contig9.36.1|Name=mRNA_H-akashiwo_Contig9.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=100bp
SSSCFPTWEVQILGQHHRRRCCCEEGVASNGGTRKYLTVLISNQRFKVQL
QRSSSLVPGQVLRLGYFPVIGTEAYLSFDPTSYPTDSPQILFVGCSSTK*
back to top

mRNA from alignment at H-akashiwo_Contig9:2545328..2545818+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.36.1 ID=mRNA_H-akashiwo_Contig9.36.1|Name=mRNA_H-akashiwo_Contig9.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=491bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2545328..2545818+ (Heterosigma akashiwo CCMP452)
TCTTCTTCTTGCTTTCCTACTTGGGAAGTACAAATTCTAGGACAACATCA
TCGTCGCCGTTGCTGTTGTGAAGAAGGAGTTGCCTCGAACGGTGGTACGA
GAAAATATCTAACCGTGCTCATCTCAAATCAACGGTTCAAAGTTCAACTT
CAACGTTCTTCGTCGTTAGTACCAGGCCAGGTACTACGGCTAGGTTACTT
CCCCGTAATCGGGACTGAAGCTTATTTGAGTTTTGATCCTACTAGCTACC
CTACTGATTCCCCCCAAATCCTTTTTGTTGGGTGCTCCTCAACCAAGTAG
TCTACATTTAATATGATCAAAGAAATCAACTACCGCTGCTCTCCCCAACA
ACAACTATATGATTTTTTGTTTGTCTGAGGTAGGTATCTAATCATCGCAG
CAACAGTCTTGGTGTATCCATCATGATGATGGAAATATTCATTACGCAAC
CAAAAGGTGTGTATCCAAAGGCTCATCAATTGATGGTAGCT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig9:2545328..2545818+

>mRNA_H-akashiwo_Contig9.36.1 ID=mRNA_H-akashiwo_Contig9.36.1|Name=mRNA_H-akashiwo_Contig9.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=300bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2545328..2545818+ (Heterosigma akashiwo CCMP452)
TCTTCTTCTTGCTTTCCTACTTGGGAAGTACAAATTCTAGGACAACATCA
TCGTCGCCGTTGCTGTTGTGAAGAAGGAGTTGCCTCGAACGGTGGTACGA
GAAAATATCTAACCGTGCTCATCTCAAATCAACGGTTCAAAGTTCAACTT
CAACGTTCTTCGTCGTTAGTACCAGGCCAGGTACTACGGCTAGGTTACTT
CCCCGTAATCGGGACTGAAGCTTATTTGAGTTTTGATCCTACTAGCTACC
CTACTGATTCCCCCCAAATCCTTTTTGTTGGGTGCTCCTCAACCAAGTAG
back to top