mRNA_H-akashiwo_Contig9.27.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.27.1
Unique NamemRNA_H-akashiwo_Contig9.27.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig9.27.1 vs. uniprot
Match: A0A7S3XTJ2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XTJ2_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 1.470e-10
Identity = 42/56 (75.00%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  223 DVVVAGGTXXXATXXXXXXXXXXXTATSSGAVVISSVNAGTAGISGKLAFSTGTTS 390
            DVVVAGGT   AT           TATSSGAVVISSVNAGTAGISGKLAFSTGTTS
Sbjct:    1 DVVVAGGTGNGATGGDVWLWSGVGTATSSGAVVISSVNAGTAGISGKLAFSTGTTS 56
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XTJ2_HETAK1.470e-1075.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:2076442..2076851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size410
Hectar predicted targeting categoryother localisation
Exons1
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.7141683-CDS-H-akashiwo_Contig9:2076441..20768491681388029.7141683-CDS-H-akashiwo_Contig9:2076441..2076849Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 2076442..2076849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.27.1prot_H-akashiwo_Contig9.27.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 2076442..2076849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.27.1

>prot_H-akashiwo_Contig9.27.1 ID=prot_H-akashiwo_Contig9.27.1|Name=mRNA_H-akashiwo_Contig9.27.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=136bp
GTTSKGNSGEILIGSGIATSGRGGAMTISVGAGLCGTGGTVSISAGETTA
ATKTGGAISVLGGHGSSGTKGMGGDVVVAGGTGNGATGGDVWLWSGVGTA
TSSGAVVISSVNAGTAGISGKLAFSTGTTSKGNSGE
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mRNA from alignment at H-akashiwo_Contig9:2076442..2076851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.27.1 ID=mRNA_H-akashiwo_Contig9.27.1|Name=mRNA_H-akashiwo_Contig9.27.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=410bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2076442..2076851+ (Heterosigma akashiwo CCMP452)
GGCACCACCTCCAAGGGCAACAGTGGCGAGATCCTGATTGGCTCTGGCAT
TGCAACCTCCGGTCGCGGCGGCGCCATGACCATATCTGTTGGAGCTGGGC
TGTGCGGCACCGGTGGAACAGTGTCTATCAGTGCGGGCGAGACCACTGCA
GCCACCAAGACTGGTGGTGCCATATCTGTGCTGGGCGGCCATGGCAGCAG
CGGCACCAAGGGCATGGGTGGAGATGTGGTGGTTGCCGGCGGCACCGGCA
ATGGTGCTACAGGTGGTGATGTCTGGTTGTGGAGTGGTGTGGGCACGGCC
ACAAGCAGCGGTGCTGTGGTGATCTCAAGTGTGAATGCAGGCACAGCTGG
CATCAGTGGCAAGCTGGCCTTCAGCACAGGCACCACCTCCAAGGGCAACA
GCGGCGAGAT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig9:2076442..2076851+

>mRNA_H-akashiwo_Contig9.27.1 ID=mRNA_H-akashiwo_Contig9.27.1|Name=mRNA_H-akashiwo_Contig9.27.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=408bp|location=Sequence derived from alignment at H-akashiwo_Contig9:2076442..2076851+ (Heterosigma akashiwo CCMP452)
GGCACCACCTCCAAGGGCAACAGTGGCGAGATCCTGATTGGCTCTGGCAT
TGCAACCTCCGGTCGCGGCGGCGCCATGACCATATCTGTTGGAGCTGGGC
TGTGCGGCACCGGTGGAACAGTGTCTATCAGTGCGGGCGAGACCACTGCA
GCCACCAAGACTGGTGGTGCCATATCTGTGCTGGGCGGCCATGGCAGCAG
CGGCACCAAGGGCATGGGTGGAGATGTGGTGGTTGCCGGCGGCACCGGCA
ATGGTGCTACAGGTGGTGATGTCTGGTTGTGGAGTGGTGTGGGCACGGCC
ACAAGCAGCGGTGCTGTGGTGATCTCAAGTGTGAATGCAGGCACAGCTGG
CATCAGTGGCAAGCTGGCCTTCAGCACAGGCACCACCTCCAAGGGCAACA
GCGGCGAG
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