mRNA_H-akashiwo_Contig9.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig9.10.1
Unique NamemRNA_H-akashiwo_Contig9.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A7S2USM1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USM1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 2.440e-48
Identity = 88/155 (56.77%), Postives = 118/155 (76.13%), Query Frame = -1
Query:  244 DTYRIRHKTLFSDGKFQG--KLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLE-GKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWATEGGETPAEYKKRMKA 699
            DT R+RHK+  S GK+Q   KL+E+++ +RIA VDTPETAKFG +GQ  G +A  F   QL  G+ VSV++LS+DQY+R+V  VSYG+ PFKK++SEELLK+GLA +YRQ GAEY  + L  Y+K+E +A+ KK+G+W  EG E+PAEYK+R KA
Sbjct:  136 DTIRVRHKSWGSSGKWQKGWKLAEHSLAVRIAGVDTPETAKFGSTGQPLGKEAKQFVERQLPLGRKVSVQLLSKDQYERIVAKVSYGTWPFKKDLSEELLKKGLAVIYRQTGAEYAGK-LPTYEKLESKAKSKKMGVWQ-EGLESPAEYKRRQKA 288          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A7S0J1Z8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J1Z8_9EUKA)

HSP 1 Score: 156 bits (394), Expect = 4.690e-45
Identity = 78/132 (59.09%), Postives = 103/132 (78.03%), Query Frame = -1
Query:  247 SENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEY-GPQGLDFYDKIEKQAQKKKLGIWATEGGETPAEYKKRMK 639
            SE+T+ IRIAAVD PETAKFG +GQ  GD+AT F R+ LEG+ V VK+L RDQYQR V  V+YG   ++++ISEELLKRGLATVYRQGGA+Y GP  +  ++++E++AQ+K +GIW  EGG  PA YK+ ++
Sbjct:    1 SESTLQIRIAAVDCPETAKFGNTGQQYGDEATEFVRKTLEGRIVRVKLLQRDQYQRAVSTVTYGRSFWRRDISEELLKRGLATVYRQGGAQYDGP--IQRWEQLEEEAQRKGIGIWGKEGGVDPATYKRMLR 130          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A2D4CEP5_PYTIN (TNase-like domain-containing protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEP5_PYTIN)

HSP 1 Score: 156 bits (394), Expect = 1.280e-43
Identity = 80/154 (51.95%), Postives = 112/154 (72.73%), Query Frame = -1
Query:  244 DTYRIRHKTLF-SDGKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R RH  L+ S G F+GK+SENT+ IR+A +DTPETAKFG  GQ  GD+A ++  + LEG+ +++ +L +DQY R V MV YG  PF++N SEE+LK GLA VYRQ GA YG + L+ ++++E +AQ+KK GIW+  +  ET +EYK R +A
Sbjct:   91 DTFRARHVPLWRSTGGFKGKMSENTLQIRLAGIDTPETAKFGSPGQPFGDEAKAWLSQTLEGRKLTLTLLHKDQYARAVCMVHYGRWPFRRNASEEILKAGLANVYRQAGAVYGGR-LEVFERLEAEAQQKKRGIWSQGKKLETASEYKARQRA 243          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A5D6YC33_9STRA (TNase-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC33_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.320e-43
Identity = 80/154 (51.95%), Postives = 110/154 (71.43%), Query Frame = -1
Query:  244 DTYRIRHKTLFSD-GKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R RH  L+   G F G+ SE+T+ +R+AA+DTPETAKFG SGQ  GD+A  +  + L GK +++ +L +DQY R V MV YG  PF+KN SEE+LK GLA VYRQ GA YG +  + ++++E QAQKKK+GIW+  +  E+ AEYK R++A
Sbjct:   94 DTFRARHVPLWRGAGAFSGRASEHTLQVRLAAIDTPETAKFGNSGQPFGDEAKRWLADALGGKNLTLTLLHKDQYSRAVCMVEYGRWPFRKNASEEILKAGLANVYRQAGAVYGGK-QELFERLEAQAQKKKIGIWSQGKRFESSAEYKARLRA 246          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: K3X2T6_GLOUD (TNase-like domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2T6_GLOUD)

HSP 1 Score: 152 bits (385), Expect = 2.950e-42
Identity = 79/154 (51.30%), Postives = 109/154 (70.78%), Query Frame = -1
Query:  244 DTYRIRHKTLFSD-GKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R RH   +   G + GK+SE+T+ IR+AA+DTPETAKFG  GQ  GD+A  +  + L+GK +++ +L +DQY R V MV YG  PF++N SEE+LK GLA VYRQ GA YG +  + ++K+E QAQK+K+GIW+  +  ET + YK RMKA
Sbjct:   94 DTFRARHLPFWRGAGAYTGKMSEHTLQIRLAAIDTPETAKFGNPGQPFGDEAKKWLSDNLDGKKLTLTLLHKDQYSRAVCMVEYGHWPFRRNASEEILKVGLANVYRQAGAVYGGK-QERFEKLEAQAQKRKIGIWSQGKKLETSSAYKARMKA 246          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A6A3X1X4_9STRA (TNase-like domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X1X4_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.680e-42
Identity = 78/154 (50.65%), Postives = 107/154 (69.48%), Query Frame = -1
Query:  244 DTYRIRHKTLF-SDGKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R RH  LF   G F GKLS++T+ IR+A +DTPETAKFG  GQ  GDDA  +    LEGK +++ +L +DQY R V MV YG  PF+++ SEE+LK GL  VYRQ GA YG +  + Y+ +E++A+KKK GIW+  +  E+ ++YK RM+A
Sbjct:   19 DTFRARHLPLFRGPGSFDGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDDAKKWLASTLEGKKLTLTLLHKDQYARAVCMVQYGRWPFRRDASEEILKVGLGQVYRQAGAVYGGK-QEIYEGLEEKARKKKKGIWSQGKKMESSSDYKDRMRA 171          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: W2QL12_PHYPN (TNase-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2QL12_PHYPN)

HSP 1 Score: 147 bits (372), Expect = 2.270e-40
Identity = 75/154 (48.70%), Postives = 109/154 (70.78%), Query Frame = -1
Query:  244 DTYRIRHKTLFSD-GKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R+RH  LF   G++ GKLS++T+ IR+A +DTPETAKFG  GQ  GD+A  +    LE + +++ +L +DQY R V MV YG  PF+++ SEE+LK GL  VYRQ GA YG +  + Y+K+E++A+KKK GIW+  +  E+ ++YK RM+A
Sbjct:   90 DTFRVRHLPLFRGAGRYDGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDEAKQWLTSTLESRKLTLTLLHKDQYARAVCMVQYGWWPFRRDASEEILKVGLGQVYRQAGAVYGGK-QEIYEKLEEKAKKKKKGIWSQGKKMESSSDYKARMRA 242          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A6A4FC27_9STRA (TNase-like domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FC27_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.870e-40
Identity = 77/154 (50.00%), Postives = 106/154 (68.83%), Query Frame = -1
Query:  244 DTYRIRHKTLFSD-GKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R RH  L    G F GKLS++T+ IR+A +DTPETAKFG  GQ  GDDA  +    LEGK +++ +L +DQY R V MV YG  PF+++ SEE+LK GL  VYRQ GA YG +  + Y+ +E++A+KKK GIW+  +  E+ ++YK RM+A
Sbjct:   97 DTFRARHLPLLRGAGSFDGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDDAKKWLASTLEGKKLTLTLLHKDQYARAVCMVQYGRWPFRRDASEEILKVGLGQVYRQAGAVYGGK-QEIYEGLEEKARKKKKGIWSQGKKMESSSDYKARMRA 249          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: A0A067CVU8_SAPPC (TNase-like domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVU8_SAPPC)

HSP 1 Score: 147 bits (371), Expect = 3.870e-40
Identity = 80/155 (51.61%), Postives = 105/155 (67.74%), Query Frame = -1
Query:  241 DTYRIRHKTLFSD-GKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKAE 699
            DT R+RH  LF   G   GKLSE T+ IR+ A+DTPETAKFG  GQ  GD+A +   + LE + +++ +L +DQY R V +V YG GPFKK+ SEELLK GLA VYRQ GA YG +    YDK+E +A+ KKL +W+  +  ET + YK R++AE
Sbjct:   96 DTLRVRHLPLFRGLGPMDGKLSEQTLQIRLCAIDTPETAKFGNQGQPFGDEAKAHLTKLLENRKLTLTLLQKDQYARAVCLVEYGWGPFKKDASEELLKVGLANVYRQTGAVYGGKQAT-YDKLEAKAKAKKLKMWSQGDDFETTSAYKARIRAE 249          
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Match: G5AA13_PHYSP (TNase-like domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AA13_PHYSP)

HSP 1 Score: 147 bits (370), Expect = 5.320e-40
Identity = 76/154 (49.35%), Postives = 108/154 (70.13%), Query Frame = -1
Query:  244 DTYRIRHKTLFSD-GKFQGKLSENTIVIRIAAVDTPETAKFGKSGQAGGDDATSFAREQLEGKTVSVKMLSRDQYQRVVGMVSYGSGPFKKNISEELLKRGLATVYRQGGAEYGPQGLDFYDKIEKQAQKKKLGIWAT-EGGETPAEYKKRMKA 699
            DT+R RH  L    G F+GKLS++T+ IR+A +DTPETAKFG  GQ  GDDA  +    LE + +++ +L +DQY R V MV YG  PF+++ SEE+LK GL  VYRQ GA YG +  + Y+K+E++A+KKK+GIW+  +  E+ ++YK RM+A
Sbjct:   96 DTFRARHLPLLRGAGTFEGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDDAKKWLATTLERRKLTLTLLHKDQYARAVCMVQYGRWPFRRDASEEILKVGLGQVYRQAGAVYGGK-QEVYEKLEEKARKKKIGIWSQGKKMESSSDYKARMRA 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig9.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2USM1_9STRA2.440e-4856.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0J1Z8_9EUKA4.690e-4559.09Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A2D4CEP5_PYTIN1.280e-4351.95TNase-like domain-containing protein (Fragment) n=... [more]
A0A5D6YC33_9STRA1.320e-4351.95TNase-like domain-containing protein n=1 Tax=Pythi... [more]
K3X2T6_GLOUD2.950e-4251.30TNase-like domain-containing protein n=1 Tax=Globi... [more]
A0A6A3X1X4_9STRA3.680e-4250.65TNase-like domain-containing protein n=4 Tax=Phyto... [more]
W2QL12_PHYPN2.270e-4048.70TNase-like domain-containing protein n=10 Tax=Phyt... [more]
A0A6A4FC27_9STRA3.870e-4050.00TNase-like domain-containing protein n=1 Tax=Phyto... [more]
A0A067CVU8_SAPPC3.870e-4051.61TNase-like domain-containing protein n=2 Tax=Sapro... [more]
G5AA13_PHYSP5.320e-4049.35TNase-like domain-containing protein n=1 Tax=Phyto... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig9contigH-akashiwo_Contig9:611151..611851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size702
Hectar predicted targeting categoryother localisation
Exons1
Cds size699
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388029.6107283-CDS-H-akashiwo_Contig9:611150..6118491681388029.6107283-CDS-H-akashiwo_Contig9:611150..611849Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig9 611151..611849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig9.10.1prot_H-akashiwo_Contig9.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig9 611151..611849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig9.10.1

>prot_H-akashiwo_Contig9.10.1 ID=prot_H-akashiwo_Contig9.10.1|Name=mRNA_H-akashiwo_Contig9.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=233bp
SLDIIIVQLSGSPNWHRKESSSGWKCCITSPQLGRFSLPNTPGAQKRILS
RTHRSCRRIYPVRPPRVGCFWMPPSTISVALRLHPLLVLCGCLPTLRRPD
PQLLLLRLLLNLVVEVQPLRPVLSSALAVDSCQAALQQLLADVLFERAGP
VGHHAHHPLVLVPTEHLHRDGFALKLLSSEGCGVIAPGLAGFTKLGGLRG
VHCSDAYHDGVLGKLALELSIREKGLVADAIGI
back to top

mRNA from alignment at H-akashiwo_Contig9:611151..611851+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig9.10.1 ID=mRNA_H-akashiwo_Contig9.10.1|Name=mRNA_H-akashiwo_Contig9.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=701bp|location=Sequence derived from alignment at H-akashiwo_Contig9:611151..611851+ (Heterosigma akashiwo CCMP452)
TCTCTTGATATTATCATTGTACAACTATCAGGCTCTCCTAATTGGCACAG AAAAGAATCATCTTCTGGCTGGAAATGCTGCATAACATCACCACAATTAG GAAGATTCTCCCTCCCCAATACACCAGGAGCGCAGAAACGGATCCTCTCT AGAACACACAGAAGCTGTAGGCGTATTTATCCAGTGCGCCCACCCCGAGT GGGGTGTTTTTGGATGCCCCCCTCAACAATCTCAGTTGCCCTCCGCCTTC ATCCGCTTCTTGTACTCTGCGGGTGTCTCCCCACCCTCCGTCGCCCAGAT CCCCAGCTTCTTCTTCTGCGCCTGCTTCTCAATCTTGTCGTAGAAGTCCA GCCCTTGCGGCCCGTACTCAGCTCCGCCCTGGCGGTAGACAGTTGCCAGG CCGCGCTTCAGCAGCTCCTCGCTGATGTTCTTTTTGAACGGGCCGGACCC GTAGGACACCATGCCCACCACCCGCTGGTACTGGTCCCGACTGAGCATCT TCACAGAGACGGTTTTGCCCTCAAGCTGCTCTCGAGCGAAGGATGTGGCG TCATCGCCCCCGGCTTGGCCGGATTTACCAAACTTGGCGGTCTCAGGGGT GTCCACTGCAGCGATGCGTATCACGATGGTGTTCTCGGAAAGCTTGCCCT GGAACTTTCCATCCGAGAAAAGGGTCTTGTGGCGGATGCGATAGGTATCA C
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig9:611151..611851+

>mRNA_H-akashiwo_Contig9.10.1 ID=mRNA_H-akashiwo_Contig9.10.1|Name=mRNA_H-akashiwo_Contig9.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=699bp|location=Sequence derived from alignment at H-akashiwo_Contig9:611151..611851+ (Heterosigma akashiwo CCMP452)
TCTCTTGATATTATCATTGTACAACTATCAGGCTCTCCTAATTGGCACAG
AAAAGAATCATCTTCTGGCTGGAAATGCTGCATAACATCACCACAATTAG
GAAGATTCTCCCTCCCCAATACACCAGGAGCGCAGAAACGGATCCTCTCT
AGAACACACAGAAGCTGTAGGCGTATTTATCCAGTGCGCCCACCCCGAGT
GGGGTGTTTTTGGATGCCCCCCTCAACAATCTCAGTTGCCCTCCGCCTTC
ATCCGCTTCTTGTACTCTGCGGGTGTCTCCCCACCCTCCGTCGCCCAGAT
CCCCAGCTTCTTCTTCTGCGCCTGCTTCTCAATCTTGTCGTAGAAGTCCA
GCCCTTGCGGCCCGTACTCAGCTCCGCCCTGGCGGTAGACAGTTGCCAGG
CCGCGCTTCAGCAGCTCCTCGCTGATGTTCTTTTTGAACGGGCCGGACCC
GTAGGACACCATGCCCACCACCCGCTGGTACTGGTCCCGACTGAGCATCT
TCACAGAGACGGTTTTGCCCTCAAGCTGCTCTCGAGCGAAGGATGTGGCG
TCATCGCCCCCGGCTTGGCCGGATTTACCAAACTTGGCGGTCTCAGGGGT
GTCCACTGCAGCGATGCGTATCACGATGGTGTTCTCGGAAAGCTTGCCCT
GGAACTTTCCATCCGAGAAAAGGGTCTTGTGGCGGATGCGATAGGTATC
back to top