mRNA_H-akashiwo_Contig897.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig897.2.1
Unique NamemRNA_H-akashiwo_Contig897.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig897.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig897contigH-akashiwo_Contig897:2396..3578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1183
Hectar predicted targeting categoryother localisation
Exons1
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388028.2337258-UTR-H-akashiwo_Contig897:2395..24321681388028.2337258-UTR-H-akashiwo_Contig897:2395..2432Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig897 2396..2432 +
1681388028.2553222-UTR-H-akashiwo_Contig897:3290..35781681388028.2553222-UTR-H-akashiwo_Contig897:3290..3578Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig897 3291..3578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388028.244724-CDS-H-akashiwo_Contig897:2432..32901681388028.244724-CDS-H-akashiwo_Contig897:2432..3290Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig897 2433..3290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig897.2.1prot_H-akashiwo_Contig897.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig897 2433..3290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig897.2.1

>prot_H-akashiwo_Contig897.2.1 ID=prot_H-akashiwo_Contig897.2.1|Name=mRNA_H-akashiwo_Contig897.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=286bp
MPEAEKKLDGFDDNFKIFDGLALDDINAFVDEDIDAIMAMEAQLSPPCEP
QLPSFFPSFSGEKSDDGKSPFQLSGGVCSELSLDGFPRLSCTTSVSSVEL
FRLDFDGDETMDAGQVRPPLSRKCPHASVDIMGLIAPELSQDDPLGVFKA
ETGLDPDSAKPVVKQEEDNEKEPLVTKPAAPASRFQIPMVSCSTMVGIQT
AAFPAGASDLMPRIHSTTIGQLLPSRTTTTLNPAVKTCKRKAVNPNRSLP
KKEEAKRRKRKDGRFCKEIVDFIPITSFPDSSQNA*
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mRNA from alignment at H-akashiwo_Contig897:2396..3578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig897.2.1 ID=mRNA_H-akashiwo_Contig897.2.1|Name=mRNA_H-akashiwo_Contig897.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1183bp|location=Sequence derived from alignment at H-akashiwo_Contig897:2396..3578+ (Heterosigma akashiwo CCMP452)
GTCATTAAAACAGCCGCACAGTCTTCCTGACTTCAGTATGCCTGAGGCTG
AGAAAAAGCTTGATGGCTTTGATGACAACTTCAAAATTTTTGATGGGTTG
GCTCTTGACGATATCAATGCCTTCGTTGATGAAGATATTGACGCCATCAT
GGCAATGGAGGCGCAACTCAGCCCACCTTGCGAGCCCCAACTTCCGTCTT
TCTTCCCTTCATTCTCAGGTGAGAAGAGTGACGATGGCAAGTCTCCATTC
CAGCTCTCTGGTGGCGTGTGCTCGGAGCTTTCTCTTGATGGGTTCCCCCG
TCTAAGCTGCACCACATCTGTCAGTTCAGTAGAACTGTTTCGTCTTGACT
TCGATGGGGACGAAACGATGGATGCAGGTCAAGTGAGACCGCCGCTCAGC
AGAAAGTGCCCCCATGCTTCTGTGGACATCATGGGGCTGATAGCCCCTGA
GCTGAGTCAGGATGACCCATTGGGCGTTTTCAAAGCTGAAACAGGATTGG
ATCCAGACTCAGCAAAGCCAGTTGTGAAGCAAGAAGAAGATAATGAGAAA
GAGCCACTTGTTACCAAACCAGCTGCTCCTGCTAGCCGTTTTCAGATCCC
CATGGTCTCTTGCAGCACAATGGTTGGAATTCAGACTGCTGCTTTCCCAG
CAGGGGCATCTGATTTGATGCCTCGGATTCACAGCACCACCATTGGGCAG
CTGCTGCCTTCAAGGACAACAACTACCCTGAATCCTGCTGTAAAGACGTG
CAAGAGAAAGGCAGTCAACCCAAACCGTTCACTTCCCAAAAAGGAGGAGG
CCAAGCGAAGGAAGCGCAAAGACGGGAGGTTTTGTAAGGAAATTGTGGAT
TTTATTCCCATCACGTCGTTCCCAGACTCTTCACAGAATGCTTAAAATCA
AGATAAAGCAGAAAAGGAAAAACCCAGAAAAAATGTACAATATAGTCGCC
TTTTCCTTTGACTGGTTTGATTTTGTCGTATCACGATTTTGCCAGTTGTC
TATACATGGCAAATTGGTCATGCTTCTCTCGCTTGTTGCGAGATGCATGC
TACTCGAGTAGTATGCAGGCCTATGCAGAGCCGTTCTGCTGTTGTTGTCA
TCAGCCATCAAGTTTTTGCAGTGCACTATTAAGCCTTATTACACTCCACT
ACAAGTTAATAACAAAAAATACAAAATACAAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig897:2396..3578+

>mRNA_H-akashiwo_Contig897.2.1 ID=mRNA_H-akashiwo_Contig897.2.1|Name=mRNA_H-akashiwo_Contig897.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=858bp|location=Sequence derived from alignment at H-akashiwo_Contig897:2396..3578+ (Heterosigma akashiwo CCMP452)
ATGCCTGAGGCTGAGAAAAAGCTTGATGGCTTTGATGACAACTTCAAAAT
TTTTGATGGGTTGGCTCTTGACGATATCAATGCCTTCGTTGATGAAGATA
TTGACGCCATCATGGCAATGGAGGCGCAACTCAGCCCACCTTGCGAGCCC
CAACTTCCGTCTTTCTTCCCTTCATTCTCAGGTGAGAAGAGTGACGATGG
CAAGTCTCCATTCCAGCTCTCTGGTGGCGTGTGCTCGGAGCTTTCTCTTG
ATGGGTTCCCCCGTCTAAGCTGCACCACATCTGTCAGTTCAGTAGAACTG
TTTCGTCTTGACTTCGATGGGGACGAAACGATGGATGCAGGTCAAGTGAG
ACCGCCGCTCAGCAGAAAGTGCCCCCATGCTTCTGTGGACATCATGGGGC
TGATAGCCCCTGAGCTGAGTCAGGATGACCCATTGGGCGTTTTCAAAGCT
GAAACAGGATTGGATCCAGACTCAGCAAAGCCAGTTGTGAAGCAAGAAGA
AGATAATGAGAAAGAGCCACTTGTTACCAAACCAGCTGCTCCTGCTAGCC
GTTTTCAGATCCCCATGGTCTCTTGCAGCACAATGGTTGGAATTCAGACT
GCTGCTTTCCCAGCAGGGGCATCTGATTTGATGCCTCGGATTCACAGCAC
CACCATTGGGCAGCTGCTGCCTTCAAGGACAACAACTACCCTGAATCCTG
CTGTAAAGACGTGCAAGAGAAAGGCAGTCAACCCAAACCGTTCACTTCCC
AAAAAGGAGGAGGCCAAGCGAAGGAAGCGCAAAGACGGGAGGTTTTGTAA
GGAAATTGTGGATTTTATTCCCATCACGTCGTTCCCAGACTCTTCACAGA
ATGCTTAA
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