mRNA_H-akashiwo_Contig89.28.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig89.28.1
Unique NamemRNA_H-akashiwo_Contig89.28.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A7S3VGD4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGD4_9STRA)

HSP 1 Score: 304 bits (779), Expect = 7.000e-103
Identity = 137/176 (77.84%), Postives = 157/176 (89.20%), Query Frame = 1
Query:   76 LAAAPPEALKDIVIPGVFDFSKFTEPTTKDE----DPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEEDEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            L+AAP EAL DIVIP V DFS +++   ++E    DPR WVPQT+CLSFRPLC CTSQGYYVNLLKFKGGG+LGRHRHSSPVHALTLKG+WGY+EH WNA  GTYVFEPPGETHTL+V++DCEEM+TMFHVTGSLLYTN+++EVIGFDDVF+KLEKAK WY ECGLGED+VQQ+VR
Sbjct:   45 LSAAPKEALTDIVIPNVVDFSAYSQEINQEELEKEDPRVWVPQTDCLSFRPLCFCTSQGYYVNLLKFKGGGILGRHRHSSPVHALTLKGNWGYEEHDWNAGPGTYVFEPPGETHTLLVNEDCEEMVTMFHVTGSLLYTNDQNEVIGFDDVFSKLEKAKQWYAECGLGEDYVQQFVR 220          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: B8BUI8_THAPS (Cupin_7 domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUI8_THAPS)

HSP 1 Score: 289 bits (739), Expect = 2.220e-96
Identity = 135/199 (67.84%), Postives = 160/199 (80.40%), Query Frame = 1
Query:    1 LASAVLTTSQAFRL-SHPSHSHRGAKLAAAPPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEED-EVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            +AS V+ +S+  +  S  S   R   L +AP  AL DIV+P +FDF+  T+    + DPR WVPQT+CLSFRPLC CTSQGYYVNLLKFKGGG+LGRHRHSSPVHALTLKGSWGY+EH W+A  GTYVFEPPGETHTLIVD+DCEEM+ MFHVTGSLLY +EE  ++IGFDDVF+KLEKA+ WY+ECGLG D+  Q+VR
Sbjct:   51 VASFVIPSSRVHQQPSSSSQRPRSPVLTSAPEGALPDIVVPAIFDFN-ITDAANDNSDPRVWVPQTDCLSFRPLCFCTSQGYYVNLLKFKGGGILGRHRHSSPVHALTLKGSWGYREHDWHATPGTYVFEPPGETHTLIVDEDCEEMVAMFHVTGSLLYVSEESGDIIGFDDVFSKLEKARDWYEECGLGRDYANQFVR 248          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A7S2Q3D0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q3D0_9STRA)

HSP 1 Score: 279 bits (714), Expect = 3.890e-93
Identity = 127/177 (71.75%), Postives = 150/177 (84.75%), Query Frame = 1
Query:   70 AKLAAAPPEALKDIVIPGVFDFSKFTE--PTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEED-EVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            A L+AAP  AL DIVIP VF+ S + +  P  K+EDPR WV QT+CLSF+PLC CTSQGYYVNLLKF GGGVLGRHRHSSPVHALTLKGSWGYKEH W+A++GTYVFEPPGETH+LIVD+DC+EM+ +FHVTGSLLY +EE  EV GFDDVF+KLEKA+ WY+ECGLG ++  + +R
Sbjct:   34 ASLSAAPEGALSDIVIPTVFNLSDWVDNDPNAKEEDPRVWVKQTDCLSFKPLCFCTSQGYYVNLLKFTGGGVLGRHRHSSPVHALTLKGSWGYKEHDWHARAGTYVFEPPGETHSLIVDEDCDEMVALFHVTGSLLYISEETGEVTGFDDVFSKLEKARDWYEECGLGREYADRLIR 210          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A7S1YP50_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YP50_9STRA)

HSP 1 Score: 280 bits (715), Expect = 3.990e-93
Identity = 130/184 (70.65%), Postives = 148/184 (80.43%), Query Frame = 1
Query:   46 HPSHSHRGAKLAAAPPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNE--EDEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            H   +   + L AAP EAL DIVIP +F    +     K+ED R WVPQT CLSFRPLC   SQGYYVNLL+FKGGG+LGRHRHSSPVHALTLKGSWGYKEH W+AK GTYVFEPPGETHTLIVD+DC+EMI MFHVTG+LLY  E  E+ +IG+DDVFTKLEKAK WY ECGLGED+V+Q++R
Sbjct:   40 HHVKTSSSSHLNAAPEEALHDIVIPSLFSNVDYN--IEKEEDERLWVPQTPCLSFRPLCFSVSQGYYVNLLRFKGGGILGRHRHSSPVHALTLKGSWGYKEHSWHAKVGTYVFEPPGETHTLIVDEDCDEMIAMFHVTGALLYVEEGEEENIIGYDDVFTKLEKAKKWYAECGLGEDYVEQFIR 221          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A7S1ZZM3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZM3_TRICV)

HSP 1 Score: 276 bits (707), Expect = 4.230e-92
Identity = 127/173 (73.41%), Postives = 142/173 (82.08%), Query Frame = 1
Query:   76 LAAAPPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEED-EVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            L AAPPEAL DIVIP +          T DEDPR WVPQT+CLSFRPLCLC SQGYYVNLL+F GGG LG HRH SPVHA TLKG WGYKEHGW+A  GTYVFEPPGETHTLIVD DC+EM+ +FHVTGSL+Y + E  +V G+DDVFTKLEKAKAWYK+CGLGED+VQQ++R
Sbjct:   45 LRAAPPEALGDIVIPSIG---------TADEDPRVWVPQTDCLSFRPLCLCVSQGYYVNLLRFTGGGTLGCHRHPSPVHAYTLKGGWGYKEHGWHAAEGTYVFEPPGETHTLIVDDDCDEMVALFHVTGSLIYVDPETGDVTGYDDVFTKLEKAKAWYKDCGLGEDYVQQFIR 208          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: K0S2L1_THAOC (Cupin_7 domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2L1_THAOC)

HSP 1 Score: 265 bits (678), Expect = 4.460e-87
Identity = 118/172 (68.60%), Postives = 145/172 (84.30%), Query Frame = 1
Query:   82 AAPPEALKDIVIPGVFDFSKFTEPTTKD-EDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEE-DEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            AAP  AL DIV+P +F+ S + +    + +D R WVPQT+CLSFRPLC CTSQGYYVNLLKF GGGVLGRHRHSSPVHA+TL+GSWGY+EHGW+A+ GTYVFEPPGETHTL+VD+DC+EM  +FHVTGSLLY +EE DEV+GFDDVF+KLEKA+  Y++ GLG ++  Q++R
Sbjct:   79 AAPEGALSDIVVPSIFNLSDWEDAAADEPDDSRIWVPQTDCLSFRPLCFCTSQGYYVNLLKFTGGGVLGRHRHSSPVHAVTLRGSWGYREHGWHARPGTYVFEPPGETHTLVVDEDCDEMCALFHVTGSLLYVDEETDEVVGFDDVFSKLEKARDHYEKVGLGREYADQFIR 250          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A7S2RCN0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RCN0_9STRA)

HSP 1 Score: 256 bits (653), Expect = 7.910e-83
Identity = 125/188 (66.49%), Postives = 140/188 (74.47%), Query Frame = 1
Query:   76 LAAAPPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGG--------------VLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEE--DEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            L AAP EAL DIVIP +    K  EP     DPR WVPQT+C+SFRPLCLC SQGYYVNLL+F+                  LG HRHSSPVHA T+KG WGY EH W+A  GTYVFEPPGETHTL+VD DC+EM+ +FHVTGSLLY N +  D+VIGFDDVFTKLEKAKAWYKECGLGED+VQQ+VR
Sbjct:  103 LRAAPKEALGDIVIPSI---DKLDEP-----DPRVWVPQTDCVSFRPLCLCVSQGYYVNLLRFRNNIDIDSDSDGNSKSILTLGCHRHSSPVHAYTIKGDWGYLEHDWHASDGTYVFEPPGETHTLVVDADCDEMVGLFHVTGSLLYCNPDNHDDVIGFDDVFTKLEKAKAWYKECGLGEDYVQQFVR 282          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: R1EBB5_EMIHU (Cupin_7 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EBB5_EMIHU)

HSP 1 Score: 239 bits (609), Expect = 7.070e-78
Identity = 113/172 (65.70%), Postives = 135/172 (78.49%), Query Frame = 1
Query:   82 AAPPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEEDE--VIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            AAP EAL DIV+P + D           +D R WVPQT+CLSFRPLCLC SQGYYVNLL+F GGG LG HRHSSPVHA T++G+WGYKEH W A++GTYVFEPPGETHTL+V +  EEMIT+FHVTG+LLY + +D   V+GFDDVFTKLEKA+A Y+  GLG D+V Q++R
Sbjct:    2 AAPAEALPDIVVPAISDT----------DDERLWVPQTDCLSFRPLCLCVSQGYYVNLLRFVGGGTLGCHRHSSPVHAHTIRGTWGYKEHAWEAQAGTYVFEPPGETHTLVVGE--EEMITLFHVTGALLYCDPDDPATVLGFDDVFTKLEKARAHYEHVGLGADYVDQFIR 161          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A7S4EL23_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EL23_9STRA)

HSP 1 Score: 212 bits (540), Expect = 3.870e-66
Identity = 99/168 (58.93%), Postives = 122/168 (72.62%), Query Frame = 1
Query:   88 PPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEEDEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            P EAL +I +P VF  S        +E  + WVPQTE +SFRPLC C S GYYVNLL+ +G G+L RHRH  PVH   LKG W Y EH W A++G+YVFEPPGE HTL+V +  +EMIT+FHVTGSLLY + + +V+G +DVFTKLE AK  Y++ GLGEDFVQQ+VR
Sbjct:   85 PKEALSEIFVPQVFSHSLNGVENIDEE--KLWVPQTESVSFRPLCFCVSGGYYVNLLRVRGAGLLSRHRHPGPVHGHVLKGKWSYLEHDWVAEAGSYVFEPPGEIHTLVVPEGVDEMITLFHVTGSLLYCDPDGKVVGAEDVFTKLELAKKHYEKVGLGEDFVQQFVR 250          
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Match: A0A448ZN79_9STRA (Cupin_7 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZN79_9STRA)

HSP 1 Score: 212 bits (540), Expect = 4.120e-66
Identity = 98/168 (58.33%), Postives = 122/168 (72.62%), Query Frame = 1
Query:   88 PPEALKDIVIPGVFDFSKFTEPTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHSSPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMFHVTGSLLYTNEEDEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR 591
            P EAL +I +P VF  S   +     E+ + WVPQT+ +SFRPLC C S GYYVNLL+ +G G+L RHRH  PVH   LKG W Y EH W A++G+YVFEPPGE HTL+V +  +EMIT+FHVTGSLLY + +  V+G +DVFTKLE AK  Y++ GLGEDFVQQ+VR
Sbjct:   87 PKEALSEIFVPQVFSHS--LDGVENIEEEKLWVPQTDSVSFRPLCFCVSGGYYVNLLRVRGAGLLSRHRHPGPVHGHVLKGKWSYLEHDWVAEAGSYVFEPPGEIHTLVVPEGVDEMITLFHVTGSLLYCDPDGNVVGAEDVFTKLELAKKHYEKVGLGEDFVQQFVR 252          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig89.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3VGD4_9STRA7.000e-10377.84Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8BUI8_THAPS2.220e-9667.84Cupin_7 domain-containing protein n=1 Tax=Thalassi... [more]
A0A7S2Q3D0_9STRA3.890e-9371.75Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1YP50_9STRA3.990e-9370.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1ZZM3_TRICV4.230e-9273.41Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0S2L1_THAOC4.460e-8768.60Cupin_7 domain-containing protein (Fragment) n=1 T... [more]
A0A7S2RCN0_9STRA7.910e-8366.49Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
R1EBB5_EMIHU7.070e-7865.70Cupin_7 domain-containing protein n=2 Tax=Emiliani... [more]
A0A7S4EL23_9STRA3.870e-6658.93Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZN79_9STRA4.120e-6658.33Cupin_7 domain-containing protein n=1 Tax=Pseudo-n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig89contigH-akashiwo_Contig89:1861407..1862000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog35128.Thaps2495
PFAMsCupin_7
Model size594
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.65e-97
EggNOG OGs2BYYJ@1|root,2S2ID@2759|Eukaryota,2XF2Z@2836|Bacillariophyta
DescriptionChrR Cupin-like domain
Cds size594
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388025.985319-CDS-H-akashiwo_Contig89:1861406..18620001681388025.985319-CDS-H-akashiwo_Contig89:1861406..1862000Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig89 1861407..1862000 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig89.28.1prot_H-akashiwo_Contig89.28.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig89 1861407..1862000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig89.28.1

>prot_H-akashiwo_Contig89.28.1 ID=prot_H-akashiwo_Contig89.28.1|Name=mRNA_H-akashiwo_Contig89.28.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=198bp
LASAVLTTSQAFRLSHPSHSHRGAKLAAAPPEALKDIVIPGVFDFSKFTE
PTTKDEDPRAWVPQTECLSFRPLCLCTSQGYYVNLLKFKGGGVLGRHRHS
SPVHALTLKGSWGYKEHGWNAKSGTYVFEPPGETHTLIVDKDCEEMITMF
HVTGSLLYTNEEDEVIGFDDVFTKLEKAKAWYKECGLGEDFVQQYVR*
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mRNA from alignment at H-akashiwo_Contig89:1861407..1862000-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig89.28.1 ID=mRNA_H-akashiwo_Contig89.28.1|Name=mRNA_H-akashiwo_Contig89.28.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=594bp|location=Sequence derived from alignment at H-akashiwo_Contig89:1861407..1862000- (Heterosigma akashiwo CCMP452)
TTGGCCAGCGCTGTTCTCACAACATCGCAAGCTTTTCGATTATCTCACCC ATCACATTCCCATAGAGGTGCAAAGCTGGCTGCAGCTCCACCTGAAGCTC TAAAAGACATTGTCATCCCAGGTGTCTTTGACTTCTCGAAGTTTACAGAA CCAACCACTAAAGACGAAGACCCCCGCGCGTGGGTCCCCCAGACAGAGTG CCTTTCTTTTCGGCCTCTGTGTTTGTGCACCTCTCAAGGATACTATGTGA ATCTTTTAAAGTTCAAGGGGGGCGGCGTTTTAGGTAGACACCGCCATTCA TCTCCAGTTCATGCGTTGACACTAAAGGGTTCATGGGGTTACAAGGAGCA TGGTTGGAACGCAAAGTCTGGAACTTATGTGTTTGAACCACCTGGTGAGA CGCACACTCTGATTGTAGATAAAGACTGCGAGGAAATGATAACTATGTTT CATGTCACGGGATCTTTGTTATACACAAATGAAGAAGACGAGGTGATAGG ATTTGATGATGTTTTTACCAAACTTGAAAAGGCAAAAGCCTGGTACAAAG AATGTGGGCTCGGAGAAGACTTTGTGCAGCAATATGTCCGGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig89:1861407..1862000-

>mRNA_H-akashiwo_Contig89.28.1 ID=mRNA_H-akashiwo_Contig89.28.1|Name=mRNA_H-akashiwo_Contig89.28.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=594bp|location=Sequence derived from alignment at H-akashiwo_Contig89:1861407..1862000- (Heterosigma akashiwo CCMP452)
TTGGCCAGCGCTGTTCTCACAACATCGCAAGCTTTTCGATTATCTCACCC
ATCACATTCCCATAGAGGTGCAAAGCTGGCTGCAGCTCCACCTGAAGCTC
TAAAAGACATTGTCATCCCAGGTGTCTTTGACTTCTCGAAGTTTACAGAA
CCAACCACTAAAGACGAAGACCCCCGCGCGTGGGTCCCCCAGACAGAGTG
CCTTTCTTTTCGGCCTCTGTGTTTGTGCACCTCTCAAGGATACTATGTGA
ATCTTTTAAAGTTCAAGGGGGGCGGCGTTTTAGGTAGACACCGCCATTCA
TCTCCAGTTCATGCGTTGACACTAAAGGGTTCATGGGGTTACAAGGAGCA
TGGTTGGAACGCAAAGTCTGGAACTTATGTGTTTGAACCACCTGGTGAGA
CGCACACTCTGATTGTAGATAAAGACTGCGAGGAAATGATAACTATGTTT
CATGTCACGGGATCTTTGTTATACACAAATGAAGAAGACGAGGTGATAGG
ATTTGATGATGTTTTTACCAAACTTGAAAAGGCAAAAGCCTGGTACAAAG
AATGTGGGCTCGGAGAAGACTTTGTGCAGCAATATGTCCGGTGA
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