mRNA_H-akashiwo_Contig89.15.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig89.15.1
Unique NamemRNA_H-akashiwo_Contig89.15.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig89.15.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig89contigH-akashiwo_Contig89:1020796..1021761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size966
Hectar predicted targeting categoryother localisation
Exons1
Cds size522
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388025.1953151-UTR-H-akashiwo_Contig89:1020795..10211791681388025.1953151-UTR-H-akashiwo_Contig89:1020795..1021179Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig89 1020796..1021179 +
1681388025.2189763-UTR-H-akashiwo_Contig89:1021701..10217611681388025.2189763-UTR-H-akashiwo_Contig89:1021701..1021761Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig89 1021702..1021761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388025.203815-CDS-H-akashiwo_Contig89:1021179..10217011681388025.203815-CDS-H-akashiwo_Contig89:1021179..1021701Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig89 1021180..1021701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig89.15.1prot_H-akashiwo_Contig89.15.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig89 1021180..1021701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig89.15.1

>prot_H-akashiwo_Contig89.15.1 ID=prot_H-akashiwo_Contig89.15.1|Name=mRNA_H-akashiwo_Contig89.15.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=174bp
MIPCLCHSSAVRFHMGKLGANGLAHLLIDEASSGVRVRIHVRGQQRHGTS
SHQKIHDLLAPILVLGRRTKYRELHLLHRLRNSLCSGLGLAAKSRNQVSL
DSLPGNQIRDQSLLLEEHGPQVHRRRLRWQDLRSILLWEAWRRRKSVRSS
VLRQHTLRRSNESSIACQRRCYR*
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mRNA from alignment at H-akashiwo_Contig89:1020796..1021761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig89.15.1 ID=mRNA_H-akashiwo_Contig89.15.1|Name=mRNA_H-akashiwo_Contig89.15.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=966bp|location=Sequence derived from alignment at H-akashiwo_Contig89:1020796..1021761+ (Heterosigma akashiwo CCMP452)
CCTCTTGTGCCCTATAGCTCCACACCCATGGCATGTGAGTAGTACCTTGC
CGCTGCGCACGAGCTTGCTGGGGTCATCAGCCACGTCGCGCACGTCGATG
GCAGTGAGACGGTCCACGGTCTGTTCCAGAGTGGGATGGGCAATAGCATT
CTCCATGGCAGCGACGGCGGACTCGTACCGCGGAACCTTGCGGCACACCC
TCCAGAGTAGGTCGCGCAGCTGGACGTCAGTGGTGGCCACGCCCGCGCGG
CGCAGCTTGCGGCGCAGGTCGTGGGCGAAGGCCATGAACTGGTCGATGTT
GCGCTCTCCTAGCTCGGCCGTGCTCCACAACTGCTCGTACGCAGCTCTCA
GCGTCTGGTCCTCCCGGCCAAACTTGTCCTTGAAATGATTCCATGTCTGT
GCCACAGTTCTGCAGTCAGATTTCACATGGGCAAACTCGGGGCCAATGGA
CTTGCGCATCTTTTGATAGATGAAGCAAGCAGTGGGGTCAGAGTACGGAT
CCACGTCAGAGGTCAACAGCGACATGGCACAAGCAGCCATCAGAAGATTC
ATGATCTCCTCGCGCCAATCCTCGTACTGGGAAGAAGAACGAAGTACAGG
GAGCTCCACTTGCTCCATCGCCTTCGTAACAGCCTTTGCAGTGGGCTGGG
TCTTGCCGCGAAGAGTCGAAATCAAGTCAGCTTGGATTCTTTGCCGGGCA
ATCAGATCAGAGATCAGTCGTTGCTGCTCGAGGAGCATGGTCCTCAAGTC
CATCGAAGAAGGCTCAGATGGCAAGATCTCAGAAGCATCTTGCTTTGGGA
AGCCTGGAGGCGGCGAAAAAGCGTTCGCAGCTCTGTTCTTCGGCAGCACA
CGCTGCGAAGAAGTAATGAAAGTTCCATCGCCTGTCAGAGGAGATGTTAT
CGGTGAGGAGGGTGAAAGGACTCTAGCCCCCCCCAATCCAGCGGATGTGC
GTCCGCCCGTGCAGCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig89:1020796..1021761+

>mRNA_H-akashiwo_Contig89.15.1 ID=mRNA_H-akashiwo_Contig89.15.1|Name=mRNA_H-akashiwo_Contig89.15.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=522bp|location=Sequence derived from alignment at H-akashiwo_Contig89:1020796..1021761+ (Heterosigma akashiwo CCMP452)
ATGATTCCATGTCTGTGCCACAGTTCTGCAGTCAGATTTCACATGGGCAA
ACTCGGGGCCAATGGACTTGCGCATCTTTTGATAGATGAAGCAAGCAGTG
GGGTCAGAGTACGGATCCACGTCAGAGGTCAACAGCGACATGGCACAAGC
AGCCATCAGAAGATTCATGATCTCCTCGCGCCAATCCTCGTACTGGGAAG
AAGAACGAAGTACAGGGAGCTCCACTTGCTCCATCGCCTTCGTAACAGCC
TTTGCAGTGGGCTGGGTCTTGCCGCGAAGAGTCGAAATCAAGTCAGCTTG
GATTCTTTGCCGGGCAATCAGATCAGAGATCAGTCGTTGCTGCTCGAGGA
GCATGGTCCTCAAGTCCATCGAAGAAGGCTCAGATGGCAAGATCTCAGAA
GCATCTTGCTTTGGGAAGCCTGGAGGCGGCGAAAAAGCGTTCGCAGCTCT
GTTCTTCGGCAGCACACGCTGCGAAGAAGTAATGAAAGTTCCATCGCCTG
TCAGAGGAGATGTTATCGGTGA
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