mRNA_H-akashiwo_Contig888.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig888.6.1
Unique NamemRNA_H-akashiwo_Contig888.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig888.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig888contigH-akashiwo_Contig888:246785..247125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size212
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388024.895333-CDS-H-akashiwo_Contig888:246784..2468161681388024.895333-CDS-H-akashiwo_Contig888:246784..246816Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig888 246785..246816 -
1681388024.9048343-CDS-H-akashiwo_Contig888:246946..2470911681388024.9048343-CDS-H-akashiwo_Contig888:246946..247091Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig888 246947..247091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388024.913811-UTR-H-akashiwo_Contig888:247091..2471251681388024.913811-UTR-H-akashiwo_Contig888:247091..247125Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig888 247092..247125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig888.6.1prot_H-akashiwo_Contig888.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig888 246785..247091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig888.6.1

>prot_H-akashiwo_Contig888.6.1 ID=prot_H-akashiwo_Contig888.6.1|Name=mRNA_H-akashiwo_Contig888.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
MAAIVMPQHCDDANSLTPSALVGSSGQDGNGARNGPETLVQQHFASFADL
PGMFQVDIL
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mRNA from alignment at H-akashiwo_Contig888:246785..247125-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig888.6.1 ID=mRNA_H-akashiwo_Contig888.6.1|Name=mRNA_H-akashiwo_Contig888.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=341bp|location=Sequence derived from alignment at H-akashiwo_Contig888:246785..247125- (Heterosigma akashiwo CCMP452)
GTCTACTCCACACTCTTTAAGCTGATTGAAGATTATGGCAGCCATAGTCA
TGCCTCAGCATTGTGATGATGCCAACAGCCTGACGCCTTCAGCCCTTGTT
GGTAGTTCTGGCCAGGATGGAAATGGAGCAAGAAATGGCCCAGAAACTCT
TGTTCAGCAGCATTTCGCTTCCTTTGCAGGTTTTCATACATCACTAATTC
CAAACCAAACTGCAAACAACAACTTGAGCTGCTTTGGTGTAAAAGCTGCC
GCCAGACCAAATACGGAACTTCGGTGACTTGTTGGTGTTTTCCTTTGATT
TTGTTTCAGATCTTCCAGGCATGTTCCAGGTGGACATTTTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig888:246785..247125-

>mRNA_H-akashiwo_Contig888.6.1 ID=mRNA_H-akashiwo_Contig888.6.1|Name=mRNA_H-akashiwo_Contig888.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig888:246785..247125- (Heterosigma akashiwo CCMP452)
ATGGCAGCCATAGTCATGCCTCAGCATTGTGATGATGCCAACAGCCTGAC
GCCTTCAGCCCTTGTTGGTAGTTCTGGCCAGGATGGAAATGGAGCAAGAA
ATGGCCCAGAAACTCTTGTTCAGCAGCATTTCGCTTCCTTTGCAGATCTT
CCAGGCATGTTCCAGGTGGACATTTTG
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