mRNA_H-akashiwo_Contig888.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig888.4.1
Unique NamemRNA_H-akashiwo_Contig888.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig888.4.1 vs. uniprot
Match: A0A2E8SHN3_9RHOB (Methyltransf_11 domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A2E8SHN3_9RHOB)

HSP 1 Score: 101 bits (251), Expect = 4.050e-23
Identity = 63/193 (32.64%), Postives = 99/193 (51.30%), Query Frame = 1 
Query:   16 LGLLASKVMETANRTSIEDAVRRLKPSRNHDVWVELGAGHGFGIAEVLKDSEKRGLPKKVVACELSPHFRDILTEFQKTTGGAFEVFDKDALELGTHFQSESVDILIMMNVVYFLSPLPRYAEHFYQLIKPGGTVAIGCKFLGVKGAGPPFV-NLDKDKIISSFVRAGFSVSTQSVDLGKVAYNYELLLASKR 591
            L  +A  +M  +N     D V R+K  +   V +ELG G+G  I E+ K SE++     ++  E+S  FR  L+  +        + + DA +L       S+D L+ +NV+YFL P+ +Y   F +++K GG   +GCKF  +K        N  + +IIS    AGFSVS++ VDLG+    Y  +L  K+
Sbjct:   33 LAWVARTLMNYSNAQVSTDIVNRMKLKKTDHV-LELGVGNGVAIKEIAKISERQ-----IIGIEISREFRRNLSRMKLPKN--IVILENDAKDLSNEIPDGSIDKLLAINVIYFLKPIEQYILEFKRILKKGGKGYLGCKFESIKNFDIEVAPNRSESEIISQISSAGFSVSSEFVDLGEDRSRYTFILFKKK 217
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BLAST of mRNA_H-akashiwo_Contig888.4.1 vs. uniprot
Match: A0A2E3KDH9_9PROT (Methyltransf_11 domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3KDH9_9PROT)

HSP 1 Score: 88.2 bits (217), Expect = 4.420e-18
Identity = 63/206 (30.58%), Postives = 108/206 (52.43%), Query Frame = 1 
Query:    1 PSKGLLGLLASKVMETANRTSIEDAVRRLKPSRNHDVWVELGAGHGFGIAEVL-KDSEKRGLPKKVVACELSPHF-RDILTEFQKTTGGAFEVFDKDALELGTHFQSESVDILIMMNVVYFLSPLPRYAEHFYQLIKPGGTVAIGCKFLGVKGAGPP-------FVNLDKDKIISSFVRAGFSVSTQSVDLGKVAYNYELLLASKR 591
            P   L+G +  ++M   N   I D V RL  + + DV VE+G+G+G  + E+L KD      P+KV A E+S  F  D+ ++F        ++ D+DA +      ++SVD ++++NV+YFLSPL  Y   F +++K  G++ I  KF      GP        F N + ++++++     FSV+++ VDLG     Y  +  + +
Sbjct:   30 PKHFLIGNITKRLMRFGNLAMIPDCVERLNVNHD-DVVVEVGSGNGQAVDEILLKD------PQKVFAFEISKTFLADLRSKFSNNP--KVKILDQDAKQSENVIAAKSVDKILLINVIYFLSPLDDYLLEFKRILKTEGSILIAGKF------GPASQMDQSVFTNTNVEELVANLENY-FSVTSEFVDLGSPISRYNSITLTNK 219
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BLAST of mRNA_H-akashiwo_Contig888.4.1 vs. uniprot
Match: A0A2D9Y8S5_9PROT (Methyltransf_11 domain-containing protein n=2 Tax=Bacteria TaxID=2 RepID=A0A2D9Y8S5_9PROT)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-16
Identity = 60/205 (29.27%), Postives = 101/205 (49.27%), Query Frame = 1 
Query:    1 PSKGLLGLLASKVMETANRTSIEDAVRRLKPSRNHDVWVELGAGHGFGIAEVLKDSEKRGLPKKVVACELSPHF-RDILTEFQKTTGGAFEVFDKDALELGTHFQSESVDILIMMNVVYFLSPLPRYAEHFYQLIKPGGTVAIGCKFLGVKGAGPP-------FVNLDKDKIISSFVRAGFSVSTQSVDLGKVAYNYELLLASKR 591
            P   L G +  ++M   N   I D V RL  +   D  VE+G+G+G  + E+L        P+KV A E+S  F  D+ ++F        E+ D+D          +SVD ++++NV+YFLSPL  Y   F +++KP G++ I  KF      GP        F + + ++++S  +   F+V+++ VDLG     Y  +  + +
Sbjct:   30 PRHFLFGNITKRLMRFGNLEMIPDCVNRLNVNHG-DAVVEVGSGNGQAVDEILLKE-----PQKVFAFEISKTFLADLWSKFNDNP--KVEILDQDVGNSERFIGDKSVDKILLINVIYFLSPLEDYLLEFKRILKPNGSILIAGKF------GPASQMDQSVFTHTNLEELLS-VLENYFNVTSEDVDLGSPISRYNAITLTNK 219
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig888.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2E8SHN3_9RHOB4.050e-2332.64Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2E3KDH9_9PROT4.420e-1830.58Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2D9Y8S5_9PROT1.810e-1629.27Methyltransf_11 domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig888contigH-akashiwo_Contig888:189509..190099 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps7523
PFAMsMethyltransf_11
Model size591
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.67e-23
EggNOG OGs2CP2C@1|root,2QZHH@2759|Eukaryota,2XHQG@2836|Bacillariophyta
DescriptionMethyltransferase domain
Cds size591
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388024.9415374-CDS-H-akashiwo_Contig888:189508..1900991681388024.9415374-CDS-H-akashiwo_Contig888:189508..190099Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig888 189509..190099 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig888.4.1prot_H-akashiwo_Contig888.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig888 189509..190099 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig888.4.1

>prot_H-akashiwo_Contig888.4.1 ID=prot_H-akashiwo_Contig888.4.1|Name=mRNA_H-akashiwo_Contig888.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=197bp
PSKGLLGLLASKVMETANRTSIEDAVRRLKPSRNHDVWVELGAGHGFGIA
EVLKDSEKRGLPKKVVACELSPHFRDILTEFQKTTGGAFEVFDKDALELG
THFQSESVDILIMMNVVYFLSPLPRYAEHFYQLIKPGGTVAIGCKFLGVK
GAGPPFVNLDKDKIISSFVRAGFSVSTQSVDLGKVAYNYELLLASKR
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mRNA from alignment at H-akashiwo_Contig888:189509..190099-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig888.4.1 ID=mRNA_H-akashiwo_Contig888.4.1|Name=mRNA_H-akashiwo_Contig888.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=591bp|location=Sequence derived from alignment at H-akashiwo_Contig888:189509..190099- (Heterosigma akashiwo CCMP452)
CCCTCAAAGGGTCTTTTGGGGTTATTGGCGTCGAAAGTGATGGAAACGGC
AAACCGAACATCGATTGAGGATGCTGTACGACGGCTGAAACCCTCGAGAA
ATCATGATGTATGGGTTGAGCTCGGTGCTGGTCATGGATTCGGGATAGCA
GAGGTCTTAAAGGACTCCGAAAAGCGGGGTCTGCCAAAGAAAGTGGTAGC
ATGCGAACTCAGTCCCCATTTCCGGGATATTCTTACAGAATTCCAAAAAA
CCACGGGTGGTGCTTTTGAGGTTTTTGACAAAGATGCATTGGAGCTAGGC
ACTCACTTCCAATCTGAAAGTGTTGACATTCTGATAATGATGAATGTTGT
GTACTTCCTGTCACCATTGCCTAGGTATGCAGAACATTTCTACCAGCTCA
TCAAGCCAGGAGGGACAGTTGCGATTGGGTGTAAATTTTTAGGCGTCAAA
GGCGCAGGCCCTCCATTCGTGAATTTGGACAAAGACAAGATCATTTCATC
ATTTGTAAGAGCGGGGTTTTCGGTGTCCACCCAGTCTGTTGACCTCGGCA
AGGTGGCATACAACTACGAACTTTTGTTGGCTTCCAAGAGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig888:189509..190099-

>mRNA_H-akashiwo_Contig888.4.1 ID=mRNA_H-akashiwo_Contig888.4.1|Name=mRNA_H-akashiwo_Contig888.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=591bp|location=Sequence derived from alignment at H-akashiwo_Contig888:189509..190099- (Heterosigma akashiwo CCMP452)
CCCTCAAAGGGTCTTTTGGGGTTATTGGCGTCGAAAGTGATGGAAACGGC
AAACCGAACATCGATTGAGGATGCTGTACGACGGCTGAAACCCTCGAGAA
ATCATGATGTATGGGTTGAGCTCGGTGCTGGTCATGGATTCGGGATAGCA
GAGGTCTTAAAGGACTCCGAAAAGCGGGGTCTGCCAAAGAAAGTGGTAGC
ATGCGAACTCAGTCCCCATTTCCGGGATATTCTTACAGAATTCCAAAAAA
CCACGGGTGGTGCTTTTGAGGTTTTTGACAAAGATGCATTGGAGCTAGGC
ACTCACTTCCAATCTGAAAGTGTTGACATTCTGATAATGATGAATGTTGT
GTACTTCCTGTCACCATTGCCTAGGTATGCAGAACATTTCTACCAGCTCA
TCAAGCCAGGAGGGACAGTTGCGATTGGGTGTAAATTTTTAGGCGTCAAA
GGCGCAGGCCCTCCATTCGTGAATTTGGACAAAGACAAGATCATTTCATC
ATTTGTAAGAGCGGGGTTTTCGGTGTCCACCCAGTCTGTTGACCTCGGCA
AGGTGGCATACAACTACGAACTTTTGTTGGCTTCCAAGAGA
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