mRNA_H-akashiwo_Contig887.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig887.5.1
Unique NamemRNA_H-akashiwo_Contig887.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig887.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig887contigH-akashiwo_Contig887:300318..300828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size191
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388024.7853482-CDS-H-akashiwo_Contig887:300317..3003421681388024.7853482-CDS-H-akashiwo_Contig887:300317..300342Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig887 300318..300342 +
1681388024.7959101-CDS-H-akashiwo_Contig887:300663..3008031681388024.7959101-CDS-H-akashiwo_Contig887:300663..300803Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig887 300664..300803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388024.8063803-UTR-H-akashiwo_Contig887:300803..3008281681388024.8063803-UTR-H-akashiwo_Contig887:300803..300828Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig887 300804..300828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig887.5.1prot_H-akashiwo_Contig887.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig887 300318..300803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig887.5.1

>prot_H-akashiwo_Contig887.5.1 ID=prot_H-akashiwo_Contig887.5.1|Name=mRNA_H-akashiwo_Contig887.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
TIGKHDRAVVVWAVDQTGPFEDASPSLTGSPAKRSSAIGQPPGASADAGA
PERK*
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mRNA from alignment at H-akashiwo_Contig887:300318..300828+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig887.5.1 ID=mRNA_H-akashiwo_Contig887.5.1|Name=mRNA_H-akashiwo_Contig887.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=511bp|location=Sequence derived from alignment at H-akashiwo_Contig887:300318..300828+ (Heterosigma akashiwo CCMP452)
ACCATTGGCAAGCACGACCGCGCAGGTATGTGCTTCAAATTGACTGGATC
TTCTCCCACAGCAATGTTCTGCTGCTGTATGGTGTGGGGGGTCTTTGCTC
TTATACACAATATGTAAGTGTTTGCAGTGCTCCCCTGCTGACAGAACGCT
GGTGTTGTTATTTCTACTGCCTCCGCCATAAAGGGCAGCAGAAAAGGGGG
GAAATGCCTGGCCCAAAATCAATCTACAAAGTGCTGATTTGTTGCTATAG
TATACGTTGCCGAGTGATCTTTTATTTTTATTTTTCTCCAACCGGTTCCT
TCCTGTTTCATTCCCCCGCCTGTTGCTTTTTATATATTTCTACCAGTGGT
TGTATGGGCGGTAGACCAAACTGGGCCATTTGAAGATGCTAGCCCTTCAT
TGACAGGATCTCCAGCTAAGCGGTCCTCAGCCATTGGCCAGCCCCCAGGC
GCCTCAGCAGATGCAGGGGCGCCAGAAAGGAAATAAGAGATAGTTAGACA
GATACGAAGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig887:300318..300828+

>mRNA_H-akashiwo_Contig887.5.1 ID=mRNA_H-akashiwo_Contig887.5.1|Name=mRNA_H-akashiwo_Contig887.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig887:300318..300828+ (Heterosigma akashiwo CCMP452)
ACCATTGGCAAGCACGACCGCGCAGTGGTTGTATGGGCGGTAGACCAAAC
TGGGCCATTTGAAGATGCTAGCCCTTCATTGACAGGATCTCCAGCTAAGC
GGTCCTCAGCCATTGGCCAGCCCCCAGGCGCCTCAGCAGATGCAGGGGCG
CCAGAAAGGAAATAA
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