mRNA_H-akashiwo_Contig887.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig887.2.1
Unique NamemRNA_H-akashiwo_Contig887.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A6V1P5X7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P5X7_HETAK)

HSP 1 Score: 201 bits (511), Expect = 4.320e-58
Identity = 93/151 (61.59%), Postives = 116/151 (76.82%), Query Frame = 1
Query:    4 RVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            R  CAFVDFRKAYD+V+HS+LW RL SLG+GPKL ELL+SIY KV+C+VR    LS  F Y +GVRQGC+LSP++FNLFIDELV ++ Q    L+G+++GDL++F LLYADDVVL+A  AA L  LL SL  FC  S M+VN+ KT +V F
Sbjct:  179 RAHCAFVDFRKAYDSVKHSVLWKRLDSLGLGPKLTELLRSIYDKVRCTVRKDNQLSDLFPYDIGVRQGCILSPIIFNLFIDELVNVIQQNSDSLSGIEIGDLVVFILLYADDVVLVADNAADLSSLLRSLQEFCTASGMNVNVKKTKVVIF 329          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: UPI001E1D5B82 (uncharacterized protein LOC123545968 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D5B82)

HSP 1 Score: 140 bits (352), Expect = 1.510e-35
Identity = 68/149 (45.64%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   10 FCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            F AF+DFRKAYD +  S LWNRL + G+  K++  +KS+Y+ V  S+R     + +FD   G+RQGC+LSPL+FNL+I++L   L        GV++GD ++  LLYADD+VL+A+ AA LQ+LLN+L  +C ++ M++ +SK+ I+ F
Sbjct:  317 FAAFIDFRKAYDFINRSKLWNRLCNTGINGKMLSAIKSLYSTVSASIRVNCFSTEWFDVKSGLRQGCILSPLLFNLYINDLAVFLKSLD---IGVKIGDELLCILLYADDIVLLAENAADLQKLLNALRDWCNLNDMNIYVSKSKIIHF 462          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A7S4DBC8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBC8_HETAK)

HSP 1 Score: 136 bits (342), Expect = 1.890e-35
Identity = 72/73 (98.63%), Postives = 73/73 (100.00%), Query Frame = 1
Query:  250 LVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPFFSKS 468
            +VKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPFFSKS
Sbjct:    1 MVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPFFSKS 73          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A023F6P3_TRIIF (Putative endonuclease-reverse transcriptase (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F6P3_TRIIF)

HSP 1 Score: 129 bits (325), Expect = 4.280e-32
Identity = 62/151 (41.06%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    4 RVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            +V+C FVDF  A+D V  S L+ +LL+LG+  K V +L+++Y +  C+VR G  +S FF    GVRQGC+LSP++F++F+D+L  +L        GV+V D ++  L+YADD+V++ +    LQR +N L+ +C    + VN+ K+ IV F
Sbjct:  121 KVYCFFVDFSAAFDRVNRSALFLKLLNLGVSSKFVTILRALYRETLCAVRGGNGISEFFSVASGVRQGCLLSPILFSVFVDDLPGLLE------GGVRVADTVVKILMYADDIVILDENPLQLQRNINILESYCQHWGLEVNLKKSQIVVF 265          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A8C7G8N4_ONCKI (Ribonuclease H n=1 Tax=Oncorhynchus kisutch TaxID=8019 RepID=A0A8C7G8N4_ONCKI)

HSP 1 Score: 125 bits (315), Expect = 4.300e-32
Identity = 69/156 (44.23%), Postives = 100/156 (64.10%), Query Frame = 1
Query:    1 GRVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPFFSKS 468
            G+VF  FVDF+KA+D++ H  L  +L+  G+G K  E++KSIYT  KC+V+ G N + FF    GVRQGC LSP +FN++I+EL + L Q      G+ + +  +  LL+ADD+VL++     LQ+ L+ L  FC   AM+V ISKT I+ F  +S
Sbjct:  114 GKVFSCFVDFKKAFDSIWHESLLYKLMESGVGGKTYEIIKSIYTNNKCAVQIGKNHTHFFPQGHGVRQGCSLSPTLFNIYINELARALEQSAA--LGLTLLESEVKCLLFADDLVLLSPTKEGLQQHLDILHRFCQTWAMTVIISKTKIMVFQKRS 267          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A023F5J8_TRIIF (Putative endonuclease-reverse transcriptase (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023F5J8_TRIIF)

HSP 1 Score: 129 bits (325), Expect = 6.960e-32
Identity = 62/151 (41.06%), Postives = 98/151 (64.90%), Query Frame = 1
Query:    4 RVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            +V+C FVDF  A+D V  S L+ +LL+LG+  K V +L+++Y +  C+VR G  +S FF    GVRQGC+LSP++F++F+D+L  +L        GV+V D ++  L+YADD+V++ +    LQR +N L+ +C    + VN+ K+ IV F
Sbjct:  592 KVYCFFVDFSAAFDRVNRSALFLKLLNLGVSSKFVTILRALYRETLCAVRGGNGISEFFSVASGVRQGCLLSPILFSVFVDDLPGLLE------GGVRVADTVVKILMYADDIVILDENPLQLQRNINILESYCQHWGLEVNLKKSQIVVF 736          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A5J4XN37_9CHLO (Endonuclease-reverse transcriptase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XN37_9CHLO)

HSP 1 Score: 126 bits (317), Expect = 3.700e-31
Identity = 62/152 (40.79%), Postives = 101/152 (66.45%), Query Frame = 1
Query:    1 GRVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            G+++C FVDF+KA+DTV H++LW  L  LG+  ++++++KS+Y     +VR    LS  F  L+GV+QGC LSP +F L++D L K L +  G +   ++ D+++  LLYADD++L++     LQ+ L++L  FC    ++VN+SKT +V F
Sbjct:   70 GKLYCYFVDFKKAFDTVPHALLWQVLEDLGVQGRVLDIIKSMYAHDSAAVRTSEGLSEIFRCLMGVKQGCPLSPTLFGLYVDGLEKHLLETAG-IDAPELCDILVPLLLYADDLILMSTSPEGLQQQLDALASFCEQRQLTVNLSKTKVVIF 220          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A8C1FML7_CYPCA (Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1FML7_CYPCA)

HSP 1 Score: 127 bits (318), Expect = 5.990e-31
Identity = 62/153 (40.52%), Postives = 100/153 (65.36%), Query Frame = 1
Query:    1 GRVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLI-IFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            G+++C F+DF KA+D+V+H++L+  L+  G+G K+  +LKS+Y+K+K  V+    L+ +FD  +GVRQGC +SP +F LF++E + +L +      G+Q+  +  + TLLYADD+  +A     LQR +  L+ FC    M VN+SKT I+ F
Sbjct:  428 GKMYCIFIDFSKAFDSVQHTLLYFILIKNGIGGKVFNVLKSMYSKLKSCVKGNEGLTEYFDCTIGVRQGCTVSPFLFVLFLNEYITMLKK---NCKGIQIEMMTEVQTLLYADDMATVADTIGGLQRQIEQLEKFCKFYGMRVNLSKTKIMVF 577          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A0N7Z875_9HEMI (Putative endonuclease-reverse transcriptase (Fragment) n=1 Tax=Rhodnius neglectus TaxID=72488 RepID=A0A0N7Z875_9HEMI)

HSP 1 Score: 124 bits (312), Expect = 7.930e-31
Identity = 63/151 (41.72%), Postives = 99/151 (65.56%), Query Frame = 1
Query:    4 RVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            +++C FVDFR A+D+V  S L+ +L ++G+  KL+  L+++Y++ + +VR    LS FF    GVRQGCVLSPL+F++F+D+L  +L        GV++G   +  LLYADDVVL+A     LQR +N L+ +C    + +N+SK+ I+ F
Sbjct:  121 KLYCFFVDFRAAFDSVHRSSLFLKLFNIGISSKLISALQALYSRSESAVRSKDGLSEFFSVGTGVRQGCVLSPLLFSIFLDDLPPVLE------GGVRLGTTKVKVLLYADDVVLMADNPLLLQRNINILETYCKQWNLHINLSKSKILVF 265          
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Match: A0A5J4XXJ8_9CHLO (Endonuclease-reverse transcriptase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XXJ8_9CHLO)

HSP 1 Score: 126 bits (316), Expect = 9.080e-31
Identity = 62/152 (40.79%), Postives = 102/152 (67.11%), Query Frame = 1
Query:    1 GRVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSVRHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQVGDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIVPF 456
            G+++C FVDFRKA+DTV  ++LW  L  LG+  ++++++KS+Y     +VR    +S+ F  L+GV+QGC LSP +F L++D L K L +     A   +G +++  LLYADD++L+++ A+ LQ+ L++L  FC    ++VN+SKT +V F
Sbjct:   72 GKLYCCFVDFRKAFDTVPRAVLWQVLEELGVHGRILDIIKSLYAHDSAAVRSSQGISAIFRCLMGVKQGCPLSPTLFGLYVDGLEKHLLETADIDAPTLMG-VMVPLLLYADDLILMSESASGLQKQLDALASFCEQRQLTVNLSKTKVVVF 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig887.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P5X7_HETAK4.320e-5861.59Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI001E1D5B821.510e-3545.64uncharacterized protein LOC123545968 n=1 Tax=Merce... [more]
A0A7S4DBC8_HETAK1.890e-3598.63Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A023F6P3_TRIIF4.280e-3241.06Putative endonuclease-reverse transcriptase (Fragm... [more]
A0A8C7G8N4_ONCKI4.300e-3244.23Ribonuclease H n=1 Tax=Oncorhynchus kisutch TaxID=... [more]
A0A023F5J8_TRIIF6.960e-3241.06Putative endonuclease-reverse transcriptase (Fragm... [more]
A0A5J4XN37_9CHLO3.700e-3140.79Endonuclease-reverse transcriptase n=1 Tax=Treboux... [more]
A0A8C1FML7_CYPCA5.990e-3140.52Ribonuclease H n=1 Tax=Cyprinus carpio TaxID=7962 ... [more]
A0A0N7Z875_9HEMI7.930e-3141.72Putative endonuclease-reverse transcriptase (Fragm... [more]
A0A5J4XXJ8_9CHLO9.080e-3140.79Endonuclease-reverse transcriptase n=1 Tax=Treboux... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig887contigH-akashiwo_Contig887:130573..131040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006813392.1
PFAMsRVT_1
Model size468
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.17e-28
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria
Descriptionprotein phosphatase regulator activity
Cds size468
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388024.8373387-CDS-H-akashiwo_Contig887:130572..1310401681388024.8373387-CDS-H-akashiwo_Contig887:130572..131040Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig887 130573..131040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig887.2.1prot_H-akashiwo_Contig887.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig887 130573..131040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig887.2.1

>prot_H-akashiwo_Contig887.2.1 ID=prot_H-akashiwo_Contig887.2.1|Name=mRNA_H-akashiwo_Contig887.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=156bp
GRVFCAFVDFRKAYDTVRHSILWNRLLSLGMGPKLVELLKSIYTKVKCSV
RHGTNLSSFFDYLVGVRQGCVLSPLVFNLFIDELVKILAQGGGELAGVQV
GDLIIFTLLYADDVVLIAKEAAHLQRLLNSLDVFCGVSAMSVNISKTMIV
PFFSKS
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mRNA from alignment at H-akashiwo_Contig887:130573..131040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig887.2.1 ID=mRNA_H-akashiwo_Contig887.2.1|Name=mRNA_H-akashiwo_Contig887.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=468bp|location=Sequence derived from alignment at H-akashiwo_Contig887:130573..131040+ (Heterosigma akashiwo CCMP452)
GGCCGTGTGTTTTGTGCCTTTGTCGACTTTAGGAAAGCATACGACACAGT TCGCCATTCCATTCTGTGGAACCGTTTGTTATCTTTGGGTATGGGCCCTA AATTGGTAGAATTACTAAAAAGCATCTATACCAAGGTCAAGTGCTCAGTT CGGCATGGTACCAACCTCTCTTCGTTCTTTGACTATCTAGTTGGAGTTCG GCAAGGCTGTGTCCTTTCCCCTCTTGTATTTAATTTATTCATTGACGAGT TGGTTAAAATTCTCGCACAAGGAGGGGGGGAATTGGCCGGTGTGCAGGTA GGGGACCTTATTATCTTTACTCTTTTGTATGCGGATGATGTGGTGCTCAT CGCAAAGGAGGCCGCACATCTACAGAGACTACTGAATTCTTTGGATGTTT TCTGTGGAGTTTCAGCAATGAGTGTCAATATTTCGAAAACCATGATTGTG CCTTTCTTTTCCAAAAGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig887:130573..131040+

>mRNA_H-akashiwo_Contig887.2.1 ID=mRNA_H-akashiwo_Contig887.2.1|Name=mRNA_H-akashiwo_Contig887.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=468bp|location=Sequence derived from alignment at H-akashiwo_Contig887:130573..131040+ (Heterosigma akashiwo CCMP452)
GGCCGTGTGTTTTGTGCCTTTGTCGACTTTAGGAAAGCATACGACACAGT
TCGCCATTCCATTCTGTGGAACCGTTTGTTATCTTTGGGTATGGGCCCTA
AATTGGTAGAATTACTAAAAAGCATCTATACCAAGGTCAAGTGCTCAGTT
CGGCATGGTACCAACCTCTCTTCGTTCTTTGACTATCTAGTTGGAGTTCG
GCAAGGCTGTGTCCTTTCCCCTCTTGTATTTAATTTATTCATTGACGAGT
TGGTTAAAATTCTCGCACAAGGAGGGGGGGAATTGGCCGGTGTGCAGGTA
GGGGACCTTATTATCTTTACTCTTTTGTATGCGGATGATGTGGTGCTCAT
CGCAAAGGAGGCCGCACATCTACAGAGACTACTGAATTCTTTGGATGTTT
TCTGTGGAGTTTCAGCAATGAGTGTCAATATTTCGAAAACCATGATTGTG
CCTTTCTTTTCCAAAAGT
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