mRNA_H-akashiwo_Contig885.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig885.5.1
Unique NamemRNA_H-akashiwo_Contig885.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: D8LRR0_ECTSI (Small nuclear ribonucleoprotein G n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRR0_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.730e-29
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = 3 
Query:   54 MVKGGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 278
            M KGGPDLKRYMDKTL+++LN NR V+GVLRG+D FMN+VLDET D  P++ ++K+GMV+IRGNS+VQFE +DP+
Sbjct:    1 MAKGGPDLKRYMDKTLSLKLNGNRTVKGVLRGYDPFMNLVLDETTD--PASSDKKMGMVIIRGNSVVQFEILDPL 73
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: W4GJ25_9STRA (Small nuclear ribonucleoprotein G n=5 Tax=Aphanomyces TaxID=100860 RepID=W4GJ25_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.950e-28
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 3 
Query:   66 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 278
            GPDLKRYMDKTL+I+LN NRKV G+LRGFDQFMNI LD+T++     +  K+GMVVIRGNSIVQFEC+D +
Sbjct:    6 GPDLKRYMDKTLSIKLNGNRKVSGILRGFDQFMNITLDDTIEEVSQTEANKIGMVVIRGNSIVQFECLDRI 76
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: H3G549_PHYRM (Small nuclear ribonucleoprotein G n=25 Tax=Oomycota TaxID=4762 RepID=H3G549_PHYRM)

HSP 1 Score: 108 bits (271), Expect = 1.110e-27
Identity = 51/76 (67.11%), Postives = 64/76 (84.21%), Query Frame = 3 
Query:   54 MVK-GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 278
            MVK  GPDLKRYMDK L+++LN NRKV GVLRGFDQFMN+ LDETV+   + ++ ++GMVVIRGNSIVQFEC++ +
Sbjct:    1 MVKTAGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETVEEVSATESNRIGMVVIRGNSIVQFECLERI 76
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A484EFX9_BRELC (Small nuclear ribonucleoprotein G n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EFX9_BRELC)

HSP 1 Score: 108 bits (270), Expect = 3.190e-27
Identity = 50/76 (65.79%), Postives = 64/76 (84.21%), Query Frame = 3 
Query:   54 MVK-GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 278
            MVK  GPDLKRYMDK L+++LN NRKV GVLRGFDQFMN+ LDET++   + ++ ++GMVVIRGNSIVQFEC++ +
Sbjct:   26 MVKTAGPDLKRYMDKRLSLKLNGNRKVSGVLRGFDQFMNVTLDETIEEVSTTESNRIGMVVIRGNSIVQFECLERI 101
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A835YWI2_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWI2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.310e-27
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 3 
Query:   63 GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 278
            GGPDLKRYMDK L ++LN NR+V+GVLRG+DQFMNIVLDE V++   A+ + +GMVVIRGNS+++FE +DPV
Sbjct:    5 GGPDLKRYMDKRLHLKLNGNREVRGVLRGYDQFMNIVLDEAVEVPSKAEERLIGMVVIRGNSVIRFEVLDPV 76
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A024GIK4_9STRA (Small nuclear ribonucleoprotein G n=3 Tax=Oomycota TaxID=4762 RepID=A0A024GIK4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.420e-27
Identity = 47/69 (68.12%), Postives = 59/69 (85.51%), Query Frame = 3 
Query:   66 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 272
            GPDLKRYMDK L+++LN NRKV GVLRG+DQFMN+ LDE ++   + +N K+GMVVIRGNSIVQFEC++
Sbjct:    6 GPDLKRYMDKRLSLKLNGNRKVSGVLRGYDQFMNVTLDEAIEEVSTTENNKIGMVVIRGNSIVQFECLE 74
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A4D9CNZ1_9STRA (Small nuclear ribonucleoprotein G n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNZ1_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.220e-26
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 3 
Query:   63 GGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 272
            GGPDLK+Y+DK LA +LN NRKV GVLRGFDQFMNIVLDETVD   + D   +G+VVIRGNS+VQFEC++
Sbjct:    5 GGPDLKKYLDKKLAFKLNGNRKVTGVLRGFDQFMNIVLDETVD-DGAPDKNDIGLVVIRGNSVVQFECLE 73
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A067C2N0_SAPPC (Small nuclear ribonucleoprotein G n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2N0_SAPPC)

HSP 1 Score: 104 bits (260), Expect = 5.000e-26
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 3 
Query:   66 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 272
            GPDLK+YMDKTL I+LN +RKV GVLRGFDQFMNI L+E ++   + +  K+GMVVIRGNSIVQFEC+D
Sbjct:    6 GPDLKKYMDKTLCIKLNGSRKVSGVLRGFDQFMNITLEEAIEEVSTTEANKLGMVVIRGNSIVQFECLD 74
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: A0A1Y1I999_KLENI (Small nuclear ribonucleoprotein G n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I999_KLENI)

HSP 1 Score: 98.6 bits (244), Expect = 1.680e-23
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 3 
Query:   54 MVKGG--PDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMDPV 278
            M KGG  PDLK+YMDK L I+LNANR V GVLRGFDQFMNIVLD +V+L+   +  ++GMVVIRGNS+V  E ++ +
Sbjct:    1 MSKGGQAPDLKKYMDKRLNIKLNANRTVVGVLRGFDQFMNIVLDNSVELTKGGEENEIGMVVIRGNSVVMIEALEHI 77
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BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Match: L8GY53_ACACA (Small nuclear ribonucleoprotein G n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GY53_ACACA)

HSP 1 Score: 97.4 bits (241), Expect = 3.580e-23
Identity = 44/69 (63.77%), Postives = 58/69 (84.06%), Query Frame = 3 
Query:   66 GPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPSADNQKVGMVVIRGNSIVQFECMD 272
            GPDL+RYMDK LAIRLNANR+V G+LRGFDQFMN+VL++TV+   S +  ++GMVVIRGNS++  E ++
Sbjct:    6 GPDLRRYMDKKLAIRLNANRRVSGILRGFDQFMNLVLEDTVEEVSSTEKNELGMVVIRGNSVILIEPLE 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig885.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRR0_ECTSI4.730e-2968.00Small nuclear ribonucleoprotein G n=1 Tax=Ectocarp... [more]
W4GJ25_9STRA1.950e-2870.42Small nuclear ribonucleoprotein G n=5 Tax=Aphanomy... [more]
H3G549_PHYRM1.110e-2767.11Small nuclear ribonucleoprotein G n=25 Tax=Oomycot... [more]
A0A484EFX9_BRELC3.190e-2765.79Small nuclear ribonucleoprotein G n=1 Tax=Bremia l... [more]
A0A835YWI2_9STRA3.310e-2766.67Small nuclear ribonucleoprotein G n=1 Tax=Tribonem... [more]
A0A024GIK4_9STRA4.420e-2768.12Small nuclear ribonucleoprotein G n=3 Tax=Oomycota... [more]
A0A4D9CNZ1_9STRA1.220e-2671.43Small nuclear ribonucleoprotein G n=1 Tax=Nannochl... [more]
A0A067C2N0_SAPPC5.000e-2669.57Small nuclear ribonucleoprotein G n=4 Tax=Saproleg... [more]
A0A1Y1I999_KLENI1.680e-2362.34Small nuclear ribonucleoprotein G n=1 Tax=Klebsorm... [more]
L8GY53_ACACA3.580e-2363.77Small nuclear ribonucleoprotein G n=1 Tax=Acantham... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig885contigH-akashiwo_Contig885:161913..162762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LRR0
Preferred nameSNRPG
PFAMsLSM
Model size612
Max annot lvl2759|Eukaryota
KEGG koko:K11099
KEGG Pathwayko03040,map03040
KEGG ModuleM00351,M00352,M00354,M00355,M00398
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005682,GO:0005683,GO:0005684,GO:0005685,GO:0005686,GO:0005687,GO:0005689,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016043,GO:0016070,GO:0016071,GO:0018130,GO:0019438,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034709,GO:0034719,GO:0035770,GO:0036464,GO:0043021,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045495,GO:0046483,GO:0046907,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060293,GO:0065003,GO:0070013,GO:0070990,GO:0071004,GO:0071010,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0097659,GO:0120114,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990446,GO:1990904
Exons2
Evalue5.85e-32
EggNOG OGsKOG1780@1|root,KOG1780@2759|Eukaryota
Ec32 ortholog descriptionsmall nuclear ribonucleoprotein polypeptide G
Ec32 orthologEc-08_002090.1
Descriptionspliceosomal snRNP assembly
Cds size228
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03032,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388023.9509296-UTR-H-akashiwo_Contig885:161912..1622431681388023.9509296-UTR-H-akashiwo_Contig885:161912..162243Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig885 161913..162243 -
1681388023.9850507-UTR-H-akashiwo_Contig885:162709..1627621681388023.9850507-UTR-H-akashiwo_Contig885:162709..162762Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig885 162710..162762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388023.9644778-CDS-H-akashiwo_Contig885:162243..1622941681388023.9644778-CDS-H-akashiwo_Contig885:162243..162294Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig885 162244..162294 -
1681388023.9750583-CDS-H-akashiwo_Contig885:162532..1627091681388023.9750583-CDS-H-akashiwo_Contig885:162532..162709Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig885 162533..162709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig885.5.1prot_H-akashiwo_Contig885.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig885 162244..162709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig885.5.1

>prot_H-akashiwo_Contig885.5.1 ID=prot_H-akashiwo_Contig885.5.1|Name=mRNA_H-akashiwo_Contig885.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=76bp
MVKGGPDLKRYMDKTLAIRLNANRKVQGVLRGFDQFMNIVLDETVDLSPS
ADNQKVGMVVIRGNSIVQFECMDPV*
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mRNA from alignment at H-akashiwo_Contig885:161913..162762-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig885.5.1 ID=mRNA_H-akashiwo_Contig885.5.1|Name=mRNA_H-akashiwo_Contig885.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=850bp|location=Sequence derived from alignment at H-akashiwo_Contig885:161913..162762- (Heterosigma akashiwo CCMP452)
GCCGCAAATACTGTTGCCATCTCTTTCCTTGCGAAAGTAATCAATTTCTT
AAAATGGTGAAAGGTGGGCCCGATTTGAAGAGGTATATGGACAAAACACT
GGCGATCAGATTGAACGCCAACAGAAAAGTTCAGGGTGTGCTTCGTGGTT
TTGATCAGTTCATGAATATCGTGCTGGATGAGACTGTTGACCTGAGTCCC
TCAGCAGATAATCAAAAAGTTGGAATGGTGGTAAGTTGGTAGACAAGGGA
AGCCTGGTCTTACTCAGAATGCCTTTATGGAAAACTTACGTGTGCCAGCT
AATTTATTGAATATAGTTTTCCATGCATCATTGCTTTAATTTTAAAACAC
AAATGCGCAGAAATTAAAAATTAAATGCAATAAATATGCGTTGGAAATAC
TCAATTGGGTAGCATAAGGCCGATTCAATAATCTTCCCCCCATGGGTATT
CTGTTATCTTTCTTTCAGGTCATTCGTGGAAACAGCATTGTGCAGTTTGA
GTGCATGGACCCAGTATGATAAATGTAACCAACCAAATGCAATCTATATG
AGCTTGAGGCAATCATGGGGAAAAGTCTAGTGATAGTTGCTGCAGTATCT
TCCTTGGGAAAGTAGCGCTCTGTTTACCACGGAGTTGACCTAAAGAAGGG
ATGGATGGCATTGAGCTCCCATAATGCTTTGCTCTTGGTGCCCCCCCCCC
ACCTCTTTTTGCTTTAGTGCTTACAGGTTGTTTAATACCATCATTGACTT
GACTTGAATATAATGTCTGCTGCAGAAAGAAAGCCATGGCTGCTGGTTGC
TATGGTAGTTTTTTAAATACAAAATGATGAAATGAAAGTGATCACTGATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig885:161913..162762-

>mRNA_H-akashiwo_Contig885.5.1 ID=mRNA_H-akashiwo_Contig885.5.1|Name=mRNA_H-akashiwo_Contig885.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=228bp|location=Sequence derived from alignment at H-akashiwo_Contig885:161913..162762- (Heterosigma akashiwo CCMP452)
ATGGTGAAAGGTGGGCCCGATTTGAAGAGGTATATGGACAAAACACTGGC
GATCAGATTGAACGCCAACAGAAAAGTTCAGGGTGTGCTTCGTGGTTTTG
ATCAGTTCATGAATATCGTGCTGGATGAGACTGTTGACCTGAGTCCCTCA
GCAGATAATCAAAAAGTTGGAATGGTGGTCATTCGTGGAAACAGCATTGT
GCAGTTTGAGTGCATGGACCCAGTATGA
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