mRNA_H-akashiwo_Contig884.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig884.4.1
Unique NamemRNA_H-akashiwo_Contig884.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A7S3UUF5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUF5_HETAK)

HSP 1 Score: 212 bits (539), Expect = 3.560e-66
Identity = 99/144 (68.75%), Postives = 123/144 (85.42%), Query Frame = 1
Query:  325 QKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFD 756
            +KG DP + WG   DQAVA+IK AFS   +LARYDPSKR+LLQTD+S  ALGAVI+HY +D +G+R EQPIYFASK ++ HQ+NYSVTE+E LAV+WAV+ F+TML+G++FLLETDH ALRSILTT++PEGRLARW++KLQE D
Sbjct:    2 KKGRDPGKDWGAEHDQAVAEIKEAFSEAPLLARYDPSKRLLLQTDSSKSALGAVISHYTVDADGKRHEQPIYFASKTMNPHQKNYSVTEQECLAVVWAVELFKTMLVGKFFLLETDHQALRSILTTKNPEGRLARWIIKLQEMD 145          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A6H5I017_9HYME (RNA-directed DNA polymerase n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5I017_9HYME)

HSP 1 Score: 213 bits (541), Expect = 6.420e-59
Identity = 114/280 (40.71%), Postives = 172/280 (61.43%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSRNWAPVGDLED 843
            ++DD+ I + +  EH+  + +V   L++  L    +K++   +SV+ LG+++  EGLR   D+V  +    P   +K ++SF+G++ +Y  F+  L+ +  PLT+LTQK  D A HWGP Q+QA   +K   +   VLAR DP     LQTDAS+FALGAV+    ID E    E PI +AS+ L K +RNY+VTEKE LAVLWAV+ +R  +LG +F + TDH +L+ +   +DP GRLARW   LQ +  E+ +R G  H  PD++SR+   +  ++D
Sbjct:  554 YIDDIIIATPTFNEHKYWLNKVIDKLNSVDLTINKEKSEFCCQSVQFLGYIIDREGLRTDPDKVKAVLNCPPPKNIKQLKSFMGMVGWYSRFLKDLAEIRTPLTKLTQK--DIAWHWGPEQEQAFTTLKRMLTEAPVLARPDPDIMFTLQTDASNFALGAVLTQ-DIDGE----EHPIAYASRALTKQERNYTVTEKECLAVLWAVEKYRGYILGSHFRVITDHASLKWLHNLKDPTGRLARWATALQAYSMEIIHRKGALHKVPDYLSRSIEEIASIDD 826          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A015KU97_RHIIW (Gag-pol fusion protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015KU97_RHIIW)

HSP 1 Score: 196 bits (497), Expect = 1.300e-56
Identity = 107/270 (39.63%), Postives = 161/270 (59.63%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSR 813
            +LD+V IYS++ E+H  H+R +F  L  AGLK  PDK    +  ++ LG +V+ +G+R    ++ ++K       V  ++ FLG+ +YY+ FVP  S +A PL +L +KG   A  WG  Q  A   +K       +L   D  K+ +L TDAS F LGA+++   +DE+G   ++ I +AS+  +K + NYS TE E LAV+WAV++F   + G+ F L TDH AL  +  T  P GRLARWV+KLQ +DFE  +R+  +H+  D +SR
Sbjct:  130 YLDNVIIYSDTFEQHLEHLRVIFDRLEDAGLKLNPDKCSFVKEELEFLGHIVSNKGIRTDPAKIQKVKDFPVPLNVTQLRGFLGLASYYRRFVPGFSRIATPLNKLLKKGV--AYSWGKEQQVAFEQLKQTLIASPILIFPDFEKQFVLLTDASTFGLGAILSQ--LDEDGN--DRVIAYASRTCNKAESNYSATELECLAVIWAVKHFHAYIYGQRFKLVTDHAALCHLFNTATPIGRLARWVMKLQMYDFETTHRSRRKHLNVDSLSR 393          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A4Y2L448_ARAVE (RNA-directed DNA polymerase n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2L448_ARAVE)

HSP 1 Score: 203 bits (516), Expect = 6.710e-56
Identity = 106/271 (39.11%), Postives = 162/271 (59.78%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSRN 816
            +LDD+ ++S + ++H   +R V   +  AGL   P K     R VK LG +V+  G+RP  D+V  ++       V+ I+SFLG+ +Y++ F+     LAEPL  L ++  D   H+G  + +A  ++KAA ++D VL  YD +    + TDAS + +GAV+         + VE+ I +AS+ L K ++NYS TE+E LAV+WA+  FR  L GR+F + TDH +L  +++ +DP GRLARW L+LQE DF V Y+ G +H   D +SRN
Sbjct:  440 YLDDIIVFSETFKDHISRLRTVLKCIQEAGLVLNPKKCLFAAREVKILGHLVSRNGVRPDPDKVRAVRNFPTPKNVRDIRSFLGLCSYFRRFIKGFCYLAEPLQLLLKR--DAKFHFGAEEAEAFDNLKAALTSDPVLGLYDENSPTEIHTDASGYGIGAVLVQIQ-----KEVEKVIAYASRTLTKAEKNYSTTERECLAVVWAINKFRPYLFGRHFTVVTDHHSLCWLMSLKDPSGRLARWALRLQEHDFSVMYKTGKKHKDADTLSRN 703          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A4Y2W5V2_ARAVE (RNA-directed DNA polymerase (Fragment) n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2W5V2_ARAVE)

HSP 1 Score: 201 bits (512), Expect = 7.290e-56
Identity = 106/271 (39.11%), Postives = 161/271 (59.41%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSRN 816
            +LDD+ ++S + ++H   +R V   +  AGL   P K     R VK LG +V+  G+RP  D+V  ++       V+ I+SFLG+ +Y++ F+     LAEPL  L ++  D   H+G  + +A  ++KAA ++D VL  YD +    + TDAS + +GAV+         + VE+ I +AS  L K ++NYS TE+E LAV+WA+  FR  L GR+F + TDH +L  +++ +DP GRLARW L+LQE DF V Y+ G +H   D +SRN
Sbjct:   51 YLDDIIVFSETFKDHISRLRTVLKCIQEAGLVLNPKKCLFAAREVKILGHLVSRNGVRPDPDKVRAVRNFPTPKNVRDIRSFLGLCSYFRRFIKGFCYLAEPLQLLLKR--DAKFHFGAEEAEAFHNLKAALTSDPVLGLYDENSPTEIHTDASGYGIGAVLVQIQ-----KEVEKVIAYASLTLTKAEKNYSTTERECLAVVWAINKFRPYLFGRHFTVVTDHHSLCWLMSLKDPSGRLARWALRLQEHDFSVMYKTGKKHKDADTLSRN 314          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A4Y1ZSB0_ARAVE (RNA-directed DNA polymerase (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y1ZSB0_ARAVE)

HSP 1 Score: 201 bits (511), Expect = 1.000e-55
Identity = 105/271 (38.75%), Postives = 161/271 (59.41%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSRN 816
            +LDD+ ++S + ++H   +R V   +  AGL   P K     R VK LG +V+  G+RP  D+V  ++       V+ I+SFLG+ +Y++ F+     LAEPL  L ++  D   H+G  + +A  ++K A ++D VL  YD +    + TDAS + +GAV+         + VE+ I +AS+ L K ++NYS TE+E LAV+WA+  FR  L GR+F + TDH +L  +++ +DP GRLARW L+LQE DF V Y+ G +H   D +SRN
Sbjct:  309 YLDDIIVFSETFKDHISRLRTVLKCIQEAGLVLNPKKCLFAAREVKILGHLVSRNGVRPDPDKVRAVRKFPTPKNVRDIRSFLGLCSYFRRFIKGFCYLAEPLQLLLKR--DAKFHFGAEEAEAFDNLKTALTSDPVLGLYDENSPTEIHTDASGYGIGAVLVQIQ-----KEVEKVIAYASRTLTKAEKNYSTTERECLAVVWAINKFRPYLFGRHFTVVTDHHSLCWLMSLKDPSGRLARWALRLQEHDFSVMYKTGKKHKDADTLSRN 572          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A0V0G672_TRIDM (RNA-directed DNA polymerase (Fragment) n=1 Tax=Triatoma dimidiata TaxID=72491 RepID=A0A0V0G672_TRIDM)

HSP 1 Score: 203 bits (516), Expect = 1.010e-55
Identity = 110/271 (40.59%), Postives = 169/271 (62.36%), Query Frame = 1
Query:    1 SHLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSR 813
            ++LDD+ I +N+ +EH +++  VF  L  AGL+   DK +     +  LGF+V   GL+    +V+ +    P   VKG+++FLG+ ++Y+ F+P  S +A P+ +L  K       WGP Q++A+  +K+  ++  +L+R D S    LQTDAS   LGAV+A    + EG+  E+ I FAS+ L K + NYSVTEKE LAV+W+++ FR  L G +F + TDH++L+ +   ++P GRLARW L+LQ FDF++ YR GP H  PD +SR
Sbjct:  329 AYLDDIIIATNTFQEHLKYLNIVFTRLREAGLQVNRDKCEFGCSELSYLGFLVNENGLQVDPSKVESVLAFPPPKDVKGLRTFLGLASWYRRFIPNFSTIAAPMHKLLHKKEKWV--WGPEQEKAMDTLKSILTSPPILSRPDFSVPFFLQTDASHSGLGAVLAQ---EIEGK--ERVIAFASRALTKPEINYSVTEKECLAVIWSIKKFRPYLEGYHFHVITDHSSLKWLQNLKNPSGRLARWALELQGFDFDIMYRKGPLHKVPDALSR 592          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A224X5N6_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224X5N6_9HEMI)

HSP 1 Score: 203 bits (516), Expect = 1.230e-55
Identity = 113/270 (41.85%), Postives = 162/270 (60.00%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSR 813
            +LDD+ IYS + EEH + +  V   L  A L+   DK    QR V+ LG +VT +G++P + +V+ +       T K +++FLG+  YY+ FV + S LA+PLT+L +K  +    WG +Q QA   +K A  + +VL   D     +L TDAS  ALGAV++      EG   E+P+ +AS++L   +RNYS TE+E LAV+WA   FR  LLGR F L TDH+ALR +L  RDP  RL RW L+L EF ++V ++ G +H   D +SR
Sbjct:  320 YLDDIIIYSATMEEHCQRLERVLVRLENANLRVNLDKCTFAQREVRYLGHLVTADGVKPDSGKVEAVAKYPVPKTTKEVKAFLGLAGYYRRFVKRFSDLAQPLTQLLRK--EVTFQWGESQQQAFESLKEALCSTSVLIYPDFRDPFILSTDASGVALGAVLSQIR---EGH--ERPVAYASRQLSAAERNYSTTERELLAVIWATAQFRCYLLGRRFTLVTDHSALRWMLHLRDPSARLTRWSLRLSEFTYDVVHKPGMKHANADALSR 582          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: A0A224XIF4_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XIF4_9HEMI)

HSP 1 Score: 202 bits (514), Expect = 2.230e-55
Identity = 115/276 (41.67%), Postives = 164/276 (59.42%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSRNWAPVG 831
            +LDD+ I+S + EEH   +R+V   +  A LK R +K    Q+ VK LG +VT +G++P  ++V  +K        K ++ FLG+  YY+ F+   S LA+PLT L +KG      W   Q +A   ++    +DTVL   D SK   L TDAS+ ALGAV+A     E     E+PI +AS++L+K ++NYS TE+E LAV+WA   FR  LLGR F L TDH AL+ +L  +DP  RL++W L+L E+D+EV +R G  H+  D +SR    VG
Sbjct:  315 YLDDIIIFSATLEEHCTRLRKVLERIQGANLKLRMEKCHFAQKEVKYLGHLVTADGVKPDPEKVAAVKGYRVPCNSKEVKGFLGLAGYYRRFIAGFSNLAKPLTSLLRKGV--TFKWEKEQQKAFEVLREVLCSDTVLVYPDYSKPFTLATDASNVALGAVLAQKCDGE-----ERPIAYASRQLNKAEQNYSATERELLAVVWATNQFRCYLLGRRFTLITDHAALQWMLRIKDPSARLSKWSLRLMEYDYEVIHRPGKHHLNADALSRVVGAVG 583          
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Match: UPI001ED87E86 (uncharacterized protein LOC124166472 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED87E86)

HSP 1 Score: 202 bits (514), Expect = 2.560e-55
Identity = 112/270 (41.48%), Postives = 157/270 (58.15%), Query Frame = 1
Query:    4 HLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLGFMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVLAEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILLQTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEGLAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQEFDFEVAYRAGPEHVPPDFMSR 813
            +LDD+ ++  + EEH   + EV   L  AGLK  P K Q  + SV+ LG ++T +G++P   ++  IK     H +K ++ FLG++ YY+ F+P  + +A PLT +T+KG   A  W          ++ A   D VL   D  +  LL TDAS  A+GAV+A     + G   EQ + +AS+KL + + NYS  EKE LAV+WAV+YFR  L GR F + TDH  LR +LT +DP  RL RW L L EF+FEV +RAG  H   D +SR
Sbjct:  831 YLDDIIVFGCTIEEHLERLTEVLERLRGAGLKVNPHKCQFLKSSVEYLGHIITDKGVQPDPRKIIAIKEYPLPHNIKTLRGFLGLVGYYRRFIPDFARIARPLTEMTRKGV--AMAWSEEARGGFERLREALCRDPVLIFPDFREPFLLFTDASGAAIGAVLA-----QRGPAGEQVVAYASRKLSRPEMNYSTVEKECLAVVWAVKYFRCYLYGRRFTVVTDHRPLRWLLTLKDPTSRLIRWSLLLSEFEFEVHHRAGKAHQNADALSR 1093          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig884.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UUF5_HETAK3.560e-6668.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5I017_9HYME6.420e-5940.71RNA-directed DNA polymerase n=1 Tax=Trichogramma b... [more]
A0A015KU97_RHIIW1.300e-5639.63Gag-pol fusion protein n=2 Tax=Rhizophagus irregul... [more]
A0A4Y2L448_ARAVE6.710e-5639.11RNA-directed DNA polymerase n=2 Tax=Araneus ventri... [more]
A0A4Y2W5V2_ARAVE7.290e-5639.11RNA-directed DNA polymerase (Fragment) n=2 Tax=Ara... [more]
A0A4Y1ZSB0_ARAVE1.000e-5538.75RNA-directed DNA polymerase (Fragment) n=1 Tax=Ara... [more]
A0A0V0G672_TRIDM1.010e-5540.59RNA-directed DNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A224X5N6_9HEMI1.230e-5541.85RNA-directed DNA polymerase (Fragment) n=1 Tax=Pan... [more]
A0A224XIF4_9HEMI2.230e-5541.67RNA-directed DNA polymerase (Fragment) n=1 Tax=Pan... [more]
UPI001ED87E862.560e-5541.48uncharacterized protein LOC124166472 n=1 Tax=Ischn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig884contigH-akashiwo_Contig884:51328..52170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7230.FBpp0161162
PFAMsRVT_1,Retrotrans_gag,gag-asp_proteas,rve,zf-H2C2
Model size843
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.39e-54
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria,41WI3@6656|Arthropoda,3SIRK@50557|Insecta,453HV@7147|Diptera,45XFR@7214|Drosophilidae
DescriptionNucleic acid binding. It is involved in the biological process described with DNA integration
Cds size843
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388023.5723383-CDS-H-akashiwo_Contig884:51327..521701681388023.5723383-CDS-H-akashiwo_Contig884:51327..52170Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig884 51328..52170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig884.4.1prot_H-akashiwo_Contig884.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig884 51328..52170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig884.4.1

>prot_H-akashiwo_Contig884.4.1 ID=prot_H-akashiwo_Contig884.4.1|Name=mRNA_H-akashiwo_Contig884.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=281bp
SHLDDVFIYSNSEEEHERHVREVFAVLHAAGLKTRPDKTQLFQRSVKCLG
FMVTPEGLRPLADRVDRIKTLDPEHTVKGIQSFLGIINYYKGFVPKLSVL
AEPLTRLTQKGADPARHWGPAQDQAVADIKAAFSTDTVLARYDPSKRILL
QTDASDFALGAVIAHYHIDEEGRRVEQPIYFASKKLDKHQRNYSVTEKEG
LAVLWAVQYFRTMLLGRYFLLETDHTALRSILTTRDPEGRLARWVLKLQE
FDFEVAYRAGPEHVPPDFMSRNWAPVGDLED
back to top

mRNA from alignment at H-akashiwo_Contig884:51328..52170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig884.4.1 ID=mRNA_H-akashiwo_Contig884.4.1|Name=mRNA_H-akashiwo_Contig884.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=843bp|location=Sequence derived from alignment at H-akashiwo_Contig884:51328..52170+ (Heterosigma akashiwo CCMP452)
TCTCATTTAGATGACGTGTTCATCTATTCAAACAGCGAAGAGGAACACGA GCGCCATGTCCGGGAGGTGTTTGCGGTACTCCATGCGGCCGGGCTCAAGA CCAGACCAGACAAGACGCAGCTCTTCCAGCGGTCCGTCAAGTGCCTGGGG TTCATGGTGACTCCGGAGGGGCTTCGGCCCTTGGCCGACAGGGTGGACCG GATTAAAACGCTGGACCCAGAACACACGGTGAAGGGTATCCAGTCGTTCT TGGGGATAATTAATTATTACAAAGGCTTTGTGCCCAAGCTGTCAGTCCTC GCAGAGCCCCTCACTCGCCTTACCCAGAAAGGGGCGGACCCTGCGCGCCA TTGGGGGCCCGCCCAGGACCAGGCGGTCGCCGACATAAAGGCAGCTTTTT CGACGGATACGGTGCTCGCCCGGTATGACCCGTCCAAACGGATACTGCTG CAGACCGACGCGTCGGACTTCGCCCTGGGGGCCGTGATAGCACACTACCA CATTGATGAGGAAGGACGTAGGGTCGAGCAGCCTATCTACTTCGCGTCCA AAAAACTGGACAAGCACCAACGCAACTACTCAGTTACGGAGAAGGAAGGG CTCGCGGTCCTCTGGGCGGTGCAGTATTTTCGGACGATGTTACTCGGTCG GTACTTCCTCCTCGAAACCGACCATACGGCCCTGAGATCCATACTGACCA CGCGGGACCCCGAAGGACGCCTCGCTCGGTGGGTCCTCAAGTTGCAGGAG TTCGATTTCGAGGTGGCCTACCGTGCTGGTCCTGAACACGTTCCCCCGGA CTTCATGTCAAGGAACTGGGCGCCGGTGGGGGACTTGGAGGAC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig884:51328..52170+

>mRNA_H-akashiwo_Contig884.4.1 ID=mRNA_H-akashiwo_Contig884.4.1|Name=mRNA_H-akashiwo_Contig884.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=843bp|location=Sequence derived from alignment at H-akashiwo_Contig884:51328..52170+ (Heterosigma akashiwo CCMP452)
TCTCATTTAGATGACGTGTTCATCTATTCAAACAGCGAAGAGGAACACGA
GCGCCATGTCCGGGAGGTGTTTGCGGTACTCCATGCGGCCGGGCTCAAGA
CCAGACCAGACAAGACGCAGCTCTTCCAGCGGTCCGTCAAGTGCCTGGGG
TTCATGGTGACTCCGGAGGGGCTTCGGCCCTTGGCCGACAGGGTGGACCG
GATTAAAACGCTGGACCCAGAACACACGGTGAAGGGTATCCAGTCGTTCT
TGGGGATAATTAATTATTACAAAGGCTTTGTGCCCAAGCTGTCAGTCCTC
GCAGAGCCCCTCACTCGCCTTACCCAGAAAGGGGCGGACCCTGCGCGCCA
TTGGGGGCCCGCCCAGGACCAGGCGGTCGCCGACATAAAGGCAGCTTTTT
CGACGGATACGGTGCTCGCCCGGTATGACCCGTCCAAACGGATACTGCTG
CAGACCGACGCGTCGGACTTCGCCCTGGGGGCCGTGATAGCACACTACCA
CATTGATGAGGAAGGACGTAGGGTCGAGCAGCCTATCTACTTCGCGTCCA
AAAAACTGGACAAGCACCAACGCAACTACTCAGTTACGGAGAAGGAAGGG
CTCGCGGTCCTCTGGGCGGTGCAGTATTTTCGGACGATGTTACTCGGTCG
GTACTTCCTCCTCGAAACCGACCATACGGCCCTGAGATCCATACTGACCA
CGCGGGACCCCGAAGGACGCCTCGCTCGGTGGGTCCTCAAGTTGCAGGAG
TTCGATTTCGAGGTGGCCTACCGTGCTGGTCCTGAACACGTTCCCCCGGA
CTTCATGTCAAGGAACTGGGCGCCGGTGGGGGACTTGGAGGAC
back to top