mRNA_H-akashiwo_Contig884.3.1 (mRNA) Heterosigma akashiwo CCMP452
Overview
Homology
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A836CMW4_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW4_9STRA) HSP 1 Score: 337 bits (863), Expect = 6.300e-113 Identity = 181/291 (62.20%), Postives = 220/291 (75.60%), Query Frame = 1 Query: 16 AIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITL--PFGVDVILGTNGFIWITRSIEQ---GAASSSAD-DSAPL---AEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSI 861 +IVVPG+ ITAE GF+RGHGTY+ ++ ++ G+ L+A VAGVVERVNKLISVRP+KSRYIGEVGDLVVGR+T +G KRW VD+ ++ AILMLSSVNLPGG QR RTYEDQLQMR+F++E+DLISAEVQ I DGS+ LHTRSLKYGKLENG L+ V L+KRLKQHFITL P GVDV+LGTNG +WITR++ G S AD D+ L AE L Q R++HA TPIL + RE+ICRVRN+V L + + PDAI VY S+ G AAKDMLQ + + S+ Sbjct: 3 SIVVPGQVITAEGGFLRGHGTYI----QESEDGGEPQLIACVAGVVERVNKLISVRPVKSRYIGEVGDLVVGRVTEVGGKRWKVDVGGHQDAILMLSSVNLPGGAQRKRTYEDQLQMRTFFKENDLISAEVQQIQQDGSIVLHTRSLKYGKLENGQLLRVPQVLVKRLKQHFITLAPPIGVDVVLGTNGRVWITRAMPAEWTGGTSEGADMDTNVLTSKAETLMQLRRLHAETPILRDERERICRVRNAVVTLQHAFALITPDAIAAVYARSVEAGMAAKDMLQAEALASL 289
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A6H5KMR3_9PHAE (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR3_9PHAE) HSP 1 Score: 333 bits (853), Expect = 2.220e-111 Identity = 177/296 (59.80%), Postives = 223/296 (75.34%), Query Frame = 1 Query: 1 NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSI-------EQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSIT 864 + A H IVVPG+ IT+ G++RGHGTY+ E+ + G L+A VAGVVERVNKLISVRPIKSRYIGEVGDLVVGR+ + KRWSV++ +++SA+LMLSSVNLPGG QRIRTYEDQLQMRSF+QE DLISAEVQ + SDG ++LHTRSLKYGKLENG LV+V P LI+RLKQH ++LP GVDVILGTNG +WI+R+ E+G A+ + AP AE L +QR+ HA T + E R ICRVRN++ AL V+H V P++I+ VY S++ G KDML G+ +L++T Sbjct: 2 SAAGHIIVVPGQEITSVQGYLRGHGTYV----EEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVAEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRIRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGS-VAPKAETLTRQRKQHAETETIGEVRTNICRVRNAIVALRNVFHLVTPESIMSVYRRSVTMGLQPKDMLSGEAVLALT 292
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A1V9YN11_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN11_9STRA) HSP 1 Score: 302 bits (773), Expect = 2.040e-99 Identity = 151/264 (57.20%), Postives = 203/264 (76.89%), Query Frame = 1 Query: 7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 798 A + +V PG+ IT+EPGF+RGHGTY+ E G+ L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+ + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ + DG++ LHTRSL+YGKLENG L+TVQPSL+KRLKQH + LP G+DVILG NG+IW++RSIE A S + ++S A+V +++ HA+T E R+KI +V N++ L+ + + P++I+ +YN Sbjct: 27 AQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLVKRLKQHMLQLPIGIDVILGCNGYIWVSRSIEHDAESLTTNESR--ADVWTERKATHAATVTSAEDRKKIAKVTNAIAQLNTRFQTITPESIMALYN 278
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A7S1CHY9_9STRA (Ribosomal RNA-processing protein 4 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHY9_9STRA) HSP 1 Score: 296 bits (758), Expect = 7.680e-97 Identity = 148/288 (51.39%), Postives = 204/288 (70.83%), Query Frame = 1 Query: 13 HAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSITEGLR 876 H +V PGE IT EPGF+RGHG +M G++ LVA+VAG+VERVNKL+SVRP+ +RY GEVGD++VGR+ +G +RW+VDI++ + A+LMLSSVNL GGVQR RT EDQ+ MR++Y+E DLISA+V ++ +DG+VSLH RSLK+GKLENG + V +LIKRLKQHF+ LP GVDVILG NGF+WI+ ++ + + LA+ ++ +++ A+ + E R ++ RVRN+V AL+ VY V P I++VY AS+ KDML D +L +T R Sbjct: 29 HVVVTPGEVITTEPGFLRGHGVHM---------RGEE-LVASVAGIVERVNKLVSVRPLNARYTGEVGDVIVGRVREVGTRRWTVDINARQDAVLMLSSVNLSGGVQRRRTTEDQMNMRAYYEEHDLISADVHSMFADGAVSLHARSLKFGKLENGAFIAVPHALIKRLKQHFVALPCGVDVILGCNGFVWISEALSRAEGRYDDEAKTGLADAVEARKEYAAARVVSAEGRLRMARVRNAVAALAAVYTVVSPQTIMDVYGASVEMRLEPKDMLNPDYLLDLTATAR 306
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A067C1K3_SAPPC (Ribosomal RNA-processing protein 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1K3_SAPPC) HSP 1 Score: 295 bits (754), Expect = 7.930e-97 Identity = 149/263 (56.65%), Postives = 198/263 (75.29%), Query Frame = 1 Query: 7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVY 795 A + +V PG+ IT+EPGF+RGHGTY+ E G+ L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+ + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ + DG++ LHTRSL+YGKLENG L+ VQP+L+KRLKQH + LP G+DVILG NG+IWI R IE A S + ++S A+V +++ HA+TP R+KI V N + L+ + + P++I+E+Y Sbjct: 6 AQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIAVQPALVKRLKQHMLQLPIGIDVILGCNGYIWIARRIEHDAESLTTNESR--ADVWTERKATHAATPTDAADRKKIAAVYNVLSTLNAQFKTITPESIMELY 256
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A1V9YVZ5_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVZ5_9STRA) HSP 1 Score: 294 bits (752), Expect = 3.010e-96 Identity = 148/264 (56.06%), Postives = 200/264 (75.76%), Query Frame = 1 Query: 7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 798 A + +V PG+ I++EPGF+RGHGTY+ E G+ L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+ + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ + DG++ LHTRSL+YGKLENG L+ VQP+L+KRLKQH + LP G+DVILG NG+IWI+RSIE + S + ++S A+V +++ HA TP R+ I +V N + L+ + + P++I+E+YN Sbjct: 27 ATYVVVTPGQVISSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEECELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIVVQPALVKRLKQHMLQLPIGIDVILGCNGYIWISRSIEHDSESLTTNESR--ADVWTERKATHAQTPTSAIDRKTIAKVYNVISTLNANFKTITPESIMEMYN 278
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A6G0WPF3_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPF3_9STRA) HSP 1 Score: 286 bits (733), Expect = 2.280e-93 Identity = 146/264 (55.30%), Postives = 198/264 (75.00%), Query Frame = 1 Query: 7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 798 + + +V PG+ IT+EPGF+RGHGTY+ E G+ L+A+VAG+VE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+ + A+LMLSSVNLP G QR RT EDQLQMRSF++E +LISAEVQ + DG++ LHTRSL+YGKLENG L+TVQPSLIKRLKQH + LP GVDVILG NG++WI RS+ + + +A + +++QVHA+T R+KI RV N++ AL+ + + P++I+E+Y+ Sbjct: 26 SQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGIVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGNKRWKVDINGQQDAVLMLSSVNLPSGAQRRRTTEDQLQMRSFFEEGELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLIKRLKQHMVQLPIGVDVILGCNGYLWIMRSMNHETDGTQNEFTA---DTWTERKQVHATTVTDVLDRQKIARVYNALAALNSAFRLISPESIMEMYD 276
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A8K1FMX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMX9_PYTOL) HSP 1 Score: 285 bits (729), Expect = 1.410e-92 Identity = 148/266 (55.64%), Postives = 195/266 (73.31%), Query Frame = 1 Query: 19 IVVPGETITAEPG-FIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSIEQGAASSSADDSAP-----LAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVY 795 +V PGE I+ E G F+RGHGTYM++ L+A+VAGVVE+VN+LI+VRP+ SRYIGEVGD+VVGRIT +G KRW VD++ + A LMLSSVNLPGG QR RTYEDQLQMR+F+ E+DLISAE+Q + DGS+SLHTRSL+YGKLENG V VQPSL+KR+KQH +TL GVD+ILGTNG+IWITRS+ +D+ P EVL ++RQVHA+T + + R K+ RV ++ L++ + + P++I+ +Y Sbjct: 34 VVTPGEVISTETGAFLRGHGTYMSN----------NELIASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRITEVGKKRWKVDVNGQQDASLMLSSVNLPGGAQRRRTYEDQLQMRNFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVQVQPSLVKRMKQHMVTLSSIGVDLILGTNGYIWITRSMSALGLDDQMEDTGPGNMETRVEVLMEKRQVHANTKLDVDDRVKVARVYRAILQLNEQFRMITPESILSLY 289
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A2D4BZY9_PYTIN (Ribosomal RNA-processing protein 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZY9_PYTIN) HSP 1 Score: 283 bits (725), Expect = 6.080e-92 Identity = 157/280 (56.07%), Postives = 203/280 (72.50%), Query Frame = 1 Query: 19 IVVPGETITAEPG-FIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSIE--QGAAS-SSADDSAP-----LAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAK 828 +V PGE I+ E G F+RGHGTY+++ LVA+VAGVVE+VN+LI+VRP+ SRYIGEVGD+VVGR+T +G KRW VD++ + A LMLSSV LPGG QR RTYEDQLQMRSF+ E+DLISAE+Q + DGS+SLHTRSL+YGKLENG V V+PSL+KR+KQH +TLP GVDVILGTNG++WI+RS+ G +S +D+ P EVL +RQ HA+T + E REKI RV +V L++ + + PD+I+ VY+ L+R A K Sbjct: 30 VVTPGEVISTETGAFLRGHGTYLSN----------NELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGNKRWKVDVNGQQDAGLMLSSVTLPGGAQRRRTYEDQLQMRSFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVRPSLVKRMKQHMVTLPTLGVDVILGTNGYLWISRSLSALDGVDDVASTEDTGPGSMETRVEVLTHKRQRHAATKMSHEDREKIARVYRAVLQLNEQFRVITPDSILAVYH-ELARQDAEK 298
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: D8LIC3_ECTSI (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC3_ECTSI) HSP 1 Score: 280 bits (717), Expect = 3.940e-91 Identity = 151/237 (63.71%), Postives = 185/237 (78.06%), Query Frame = 1 Query: 1 NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSI-------EQGAASSSADDSAPLAEVLQQQRQVHAST 687 + A H IVVPG+ IT+ G++RGHGTY+ E+ + G L+A VAGVVERVNKLISVRPIKSRYIGEVGDLVVGR+T + KRWSV++ +++SA+LMLSSVNLPGG QR+RTYEDQLQMRSF+QE DLISAEVQ + SDG ++LHTRSLKYGKLENG LV+V P LI+RLKQH ++LP GVDVILGTNG +WI+R+ E+G A+ + AP AE L +QR+ HA T Sbjct: 2 SAAGHIIVVPGQEITSVQGYLRGHGTYV----EEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVTEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRMRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGS-VAPKAETLTRQRKQHAET 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig884.3.1 >prot_H-akashiwo_Contig884.3.1 ID=prot_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=294bp NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVback to top mRNA from alignment at H-akashiwo_Contig884:17676..18557- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig884.3.1 ID=mRNA_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=882bp|location=Sequence derived from alignment at H-akashiwo_Contig884:17676..18557- (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig884:17676..18557- >mRNA_H-akashiwo_Contig884.3.1 ID=mRNA_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=882bp|location=Sequence derived from alignment at H-akashiwo_Contig884:17676..18557- (Heterosigma akashiwo CCMP452)back to top |