mRNA_H-akashiwo_Contig884.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig884.3.1
Unique NamemRNA_H-akashiwo_Contig884.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A836CMW4_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW4_9STRA)

HSP 1 Score: 337 bits (863), Expect = 6.300e-113
Identity = 181/291 (62.20%), Postives = 220/291 (75.60%), Query Frame = 1
Query:   16 AIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITL--PFGVDVILGTNGFIWITRSIEQ---GAASSSAD-DSAPL---AEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSI 861
            +IVVPG+ ITAE GF+RGHGTY+    ++ ++ G+  L+A VAGVVERVNKLISVRP+KSRYIGEVGDLVVGR+T +G KRW VD+  ++ AILMLSSVNLPGG QR RTYEDQLQMR+F++E+DLISAEVQ I  DGS+ LHTRSLKYGKLENG L+ V   L+KRLKQHFITL  P GVDV+LGTNG +WITR++     G  S  AD D+  L   AE L Q R++HA TPIL + RE+ICRVRN+V  L   +  + PDAI  VY  S+  G AAKDMLQ + + S+
Sbjct:    3 SIVVPGQVITAEGGFLRGHGTYI----QESEDGGEPQLIACVAGVVERVNKLISVRPVKSRYIGEVGDLVVGRVTEVGGKRWKVDVGGHQDAILMLSSVNLPGGAQRKRTYEDQLQMRTFFKENDLISAEVQQIQQDGSIVLHTRSLKYGKLENGQLLRVPQVLVKRLKQHFITLAPPIGVDVVLGTNGRVWITRAMPAEWTGGTSEGADMDTNVLTSKAETLMQLRRLHAETPILRDERERICRVRNAVVTLQHAFALITPDAIAAVYARSVEAGMAAKDMLQAEALASL 289          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A6H5KMR3_9PHAE (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMR3_9PHAE)

HSP 1 Score: 333 bits (853), Expect = 2.220e-111
Identity = 177/296 (59.80%), Postives = 223/296 (75.34%), Query Frame = 1
Query:    1 NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSI-------EQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSIT 864
            + A H IVVPG+ IT+  G++RGHGTY+    E+  + G   L+A VAGVVERVNKLISVRPIKSRYIGEVGDLVVGR+  +  KRWSV++ +++SA+LMLSSVNLPGG QRIRTYEDQLQMRSF+QE DLISAEVQ + SDG ++LHTRSLKYGKLENG LV+V P LI+RLKQH ++LP  GVDVILGTNG +WI+R+        E+G A+ +    AP AE L +QR+ HA T  + E R  ICRVRN++ AL  V+H V P++I+ VY  S++ G   KDML G+ +L++T
Sbjct:    2 SAAGHIIVVPGQEITSVQGYLRGHGTYV----EEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVAEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRIRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGS-VAPKAETLTRQRKQHAETETIGEVRTNICRVRNAIVALRNVFHLVTPESIMSVYRRSVTMGLQPKDMLSGEAVLALT 292          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A1V9YN11_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YN11_9STRA)

HSP 1 Score: 302 bits (773), Expect = 2.040e-99
Identity = 151/264 (57.20%), Postives = 203/264 (76.89%), Query Frame = 1
Query:    7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 798
            A + +V PG+ IT+EPGF+RGHGTY+        E G+  L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+TVQPSL+KRLKQH + LP G+DVILG NG+IW++RSIE  A S + ++S   A+V  +++  HA+T    E R+KI +V N++  L+  +  + P++I+ +YN
Sbjct:   27 AQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLVKRLKQHMLQLPIGIDVILGCNGYIWVSRSIEHDAESLTTNESR--ADVWTERKATHAATVTSAEDRKKIAKVTNAIAQLNTRFQTITPESIMALYN 278          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A7S1CHY9_9STRA (Ribosomal RNA-processing protein 4 (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHY9_9STRA)

HSP 1 Score: 296 bits (758), Expect = 7.680e-97
Identity = 148/288 (51.39%), Postives = 204/288 (70.83%), Query Frame = 1
Query:   13 HAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSITEGLR 876
            H +V PGE IT EPGF+RGHG +M          G++ LVA+VAG+VERVNKL+SVRP+ +RY GEVGD++VGR+  +G +RW+VDI++ + A+LMLSSVNL GGVQR RT EDQ+ MR++Y+E DLISA+V ++ +DG+VSLH RSLK+GKLENG  + V  +LIKRLKQHF+ LP GVDVILG NGF+WI+ ++ +       +    LA+ ++ +++  A+  +  E R ++ RVRN+V AL+ VY  V P  I++VY AS+      KDML  D +L +T   R
Sbjct:   29 HVVVTPGEVITTEPGFLRGHGVHM---------RGEE-LVASVAGIVERVNKLVSVRPLNARYTGEVGDVIVGRVREVGTRRWTVDINARQDAVLMLSSVNLSGGVQRRRTTEDQMNMRAYYEEHDLISADVHSMFADGAVSLHARSLKFGKLENGAFIAVPHALIKRLKQHFVALPCGVDVILGCNGFVWISEALSRAEGRYDDEAKTGLADAVEARKEYAAARVVSAEGRLRMARVRNAVAALAAVYTVVSPQTIMDVYGASVEMRLEPKDMLNPDYLLDLTATAR 306          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A067C1K3_SAPPC (Ribosomal RNA-processing protein 4 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C1K3_SAPPC)

HSP 1 Score: 295 bits (754), Expect = 7.930e-97
Identity = 149/263 (56.65%), Postives = 198/263 (75.29%), Query Frame = 1
Query:    7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVY 795
            A + +V PG+ IT+EPGF+RGHGTY+        E G+  L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+ VQP+L+KRLKQH + LP G+DVILG NG+IWI R IE  A S + ++S   A+V  +++  HA+TP     R+KI  V N +  L+  +  + P++I+E+Y
Sbjct:    6 AQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEESELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIAVQPALVKRLKQHMLQLPIGIDVILGCNGYIWIARRIEHDAESLTTNESR--ADVWTERKATHAATPTDAADRKKIAAVYNVLSTLNAQFKTITPESIMELY 256          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A1V9YVZ5_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVZ5_9STRA)

HSP 1 Score: 294 bits (752), Expect = 3.010e-96
Identity = 148/264 (56.06%), Postives = 200/264 (75.76%), Query Frame = 1
Query:    7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 798
            A + +V PG+ I++EPGF+RGHGTY+        E G+  L+A+VAGVVE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLPGG QR RTYEDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+ VQP+L+KRLKQH + LP G+DVILG NG+IWI+RSIE  + S + ++S   A+V  +++  HA TP     R+ I +V N +  L+  +  + P++I+E+YN
Sbjct:   27 ATYVVVTPGQVISSEPGFLRGHGTYV--------ENGE--LLASVAGVVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGSKRWKVDINGQQDAVLMLSSVNLPGGAQRRRTYEDQLQMRSFFEECELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLIVVQPALVKRLKQHMLQLPIGIDVILGCNGYIWISRSIEHDSESLTTNESR--ADVWTERKATHAQTPTSAIDRKTIAKVYNVISTLNANFKTITPESIMEMYN 278          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A6G0WPF3_9STRA (Ribosomal RNA-processing protein 4 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WPF3_9STRA)

HSP 1 Score: 286 bits (733), Expect = 2.280e-93
Identity = 146/264 (55.30%), Postives = 198/264 (75.00%), Query Frame = 1
Query:    7 ADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSIEQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYN 798
            + + +V PG+ IT+EPGF+RGHGTY+        E G+  L+A+VAG+VE+VN+L+SVRP+ SRYIGEVGD+VVGRI+ +G KRW VDI+  + A+LMLSSVNLP G QR RT EDQLQMRSF++E +LISAEVQ +  DG++ LHTRSL+YGKLENG L+TVQPSLIKRLKQH + LP GVDVILG NG++WI RS+      +  + +A   +   +++QVHA+T      R+KI RV N++ AL+  +  + P++I+E+Y+
Sbjct:   26 SQYVVVTPGQVITSEPGFLRGHGTYV--------ENGE--LLASVAGIVEKVNQLVSVRPLVSRYIGEVGDIVVGRISEVGNKRWKVDINGQQDAVLMLSSVNLPSGAQRRRTTEDQLQMRSFFEEGELISAEVQEVRYDGTMWLHTRSLRYGKLENGQLITVQPSLIKRLKQHMVQLPIGVDVILGCNGYLWIMRSMNHETDGTQNEFTA---DTWTERKQVHATTVTDVLDRQKIARVYNALAALNSAFRLISPESIMEMYD 276          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A8K1FMX9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMX9_PYTOL)

HSP 1 Score: 285 bits (729), Expect = 1.410e-92
Identity = 148/266 (55.64%), Postives = 195/266 (73.31%), Query Frame = 1
Query:   19 IVVPGETITAEPG-FIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSIEQGAASSSADDSAP-----LAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVY 795
            +V PGE I+ E G F+RGHGTYM++            L+A+VAGVVE+VN+LI+VRP+ SRYIGEVGD+VVGRIT +G KRW VD++  + A LMLSSVNLPGG QR RTYEDQLQMR+F+ E+DLISAE+Q +  DGS+SLHTRSL+YGKLENG  V VQPSL+KR+KQH +TL   GVD+ILGTNG+IWITRS+         +D+ P       EVL ++RQVHA+T +  + R K+ RV  ++  L++ +  + P++I+ +Y
Sbjct:   34 VVTPGEVISTETGAFLRGHGTYMSN----------NELIASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRITEVGKKRWKVDVNGQQDASLMLSSVNLPGGAQRRRTYEDQLQMRNFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVQVQPSLVKRMKQHMVTLSSIGVDLILGTNGYIWITRSMSALGLDDQMEDTGPGNMETRVEVLMEKRQVHANTKLDVDDRVKVARVYRAILQLNEQFRMITPESILSLY 289          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: A0A2D4BZY9_PYTIN (Ribosomal RNA-processing protein 4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZY9_PYTIN)

HSP 1 Score: 283 bits (725), Expect = 6.080e-92
Identity = 157/280 (56.07%), Postives = 203/280 (72.50%), Query Frame = 1
Query:   19 IVVPGETITAEPG-FIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSIE--QGAAS-SSADDSAP-----LAEVLQQQRQVHASTPILPEAREKICRVRNSVEALSQVYHPVDPDAIVEVYNASLSRGFAAK 828
            +V PGE I+ E G F+RGHGTY+++            LVA+VAGVVE+VN+LI+VRP+ SRYIGEVGD+VVGR+T +G KRW VD++  + A LMLSSV LPGG QR RTYEDQLQMRSF+ E+DLISAE+Q +  DGS+SLHTRSL+YGKLENG  V V+PSL+KR+KQH +TLP  GVDVILGTNG++WI+RS+    G    +S +D+ P       EVL  +RQ HA+T +  E REKI RV  +V  L++ +  + PD+I+ VY+  L+R  A K
Sbjct:   30 VVTPGEVISTETGAFLRGHGTYLSN----------NELVASVAGVVEKVNQLITVRPLVSRYIGEVGDIVVGRVTEVGNKRWKVDVNGQQDAGLMLSSVTLPGGAQRRRTYEDQLQMRSFFVENDLISAEIQEVRYDGSLSLHTRSLRYGKLENGQFVAVRPSLVKRMKQHMVTLPTLGVDVILGTNGYLWISRSLSALDGVDDVASTEDTGPGSMETRVEVLTHKRQRHAATKMSHEDREKIARVYRAVLQLNEQFRVITPDSILAVYH-ELARQDAEK 298          
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Match: D8LIC3_ECTSI (Ribosomal RNA-processing protein 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC3_ECTSI)

HSP 1 Score: 280 bits (717), Expect = 3.940e-91
Identity = 151/237 (63.71%), Postives = 185/237 (78.06%), Query Frame = 1
Query:    1 NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILMLSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTRSLKYGKLENGLLVTVQPSLIKRLKQHFITLP-FGVDVILGTNGFIWITRSI-------EQGAASSSADDSAPLAEVLQQQRQVHAST 687
            + A H IVVPG+ IT+  G++RGHGTY+    E+  + G   L+A VAGVVERVNKLISVRPIKSRYIGEVGDLVVGR+T +  KRWSV++ +++SA+LMLSSVNLPGG QR+RTYEDQLQMRSF+QE DLISAEVQ + SDG ++LHTRSLKYGKLENG LV+V P LI+RLKQH ++LP  GVDVILGTNG +WI+R+        E+G A+ +    AP AE L +QR+ HA T
Sbjct:    2 SAAGHIIVVPGQEITSVQGYLRGHGTYV----EEGTDGGPPKLLACVAGVVERVNKLISVRPIKSRYIGEVGDLVVGRVTEVQSKRWSVEVGAHRSAVLMLSSVNLPGGQQRMRTYEDQLQMRSFFQEHDLISAEVQQVNSDGGIALHTRSLKYGKLENGQLVSVPPVLIRRLKQHVVSLPDTGVDVILGTNGNVWISRTPPEEWKGKEEGDAAGTGS-VAPKAETLTRQRKQHAET 233          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig884.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMW4_9STRA6.300e-11362.20Ribosomal RNA-processing protein 4 n=1 Tax=Tribone... [more]
A0A6H5KMR3_9PHAE2.220e-11159.80Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]
A0A1V9YN11_9STRA2.040e-9957.20Ribosomal RNA-processing protein 4 n=1 Tax=Achlya ... [more]
A0A7S1CHY9_9STRA7.680e-9751.39Ribosomal RNA-processing protein 4 (Fragment) n=1 ... [more]
A0A067C1K3_SAPPC7.930e-9756.65Ribosomal RNA-processing protein 4 n=2 Tax=Saprole... [more]
A0A1V9YVZ5_9STRA3.010e-9656.06Ribosomal RNA-processing protein 4 n=1 Tax=Thraust... [more]
A0A6G0WPF3_9STRA2.280e-9355.30Ribosomal RNA-processing protein 4 n=1 Tax=Aphanom... [more]
A0A8K1FMX9_PYTOL1.410e-9255.64Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BZY9_PYTIN6.080e-9256.07Ribosomal RNA-processing protein 4 n=1 Tax=Pythium... [more]
D8LIC3_ECTSI3.940e-9163.71Ribosomal RNA-processing protein 4 n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig884contigH-akashiwo_Contig884:17676..18557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008608361.1
Preferred nameEXOSC2
PFAMsECR1_N,KH_6
Model size882
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K03679,ko:K10572
KEGG ReactionR05202
KEGG Pathwayko00562,ko01100,ko03018,ko04070,map00562,map01100,map03018,map04070
KEGG ModuleM00132,M00390,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000228,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000790,GO:0000956,GO:0001558,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0008298,GO:0008312,GO:0008408,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022613,GO:0030307,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031329,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0034399,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0040008,GO:0042254,GO:0043144,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045927,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051179,GO:0051252,GO:0051607,GO:0051641,GO:0051704,GO:0051707,GO:0060147,GO:0060149,GO:0060255,GO:0060968,GO:0060969,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098542,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354
Exons1
Evalue3.12e-96
EggNOG OGsCOG1097@1|root,KOG3013@2759|Eukaryota
Ec32 ortholog descriptionRrp4 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-24_001630.1
EC2.7.1.158
Descriptionnuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
Cds size882
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388023.5396602-CDS-H-akashiwo_Contig884:17675..185571681388023.5396602-CDS-H-akashiwo_Contig884:17675..18557Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig884 17676..18557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig884.3.1prot_H-akashiwo_Contig884.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig884 17676..18557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig884.3.1

>prot_H-akashiwo_Contig884.3.1 ID=prot_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=294bp
NVADHAIVVPGETITAEPGFIRGHGTYMTDPDEDQDEEGQQNLVAAVAGV
VERVNKLISVRPIKSRYIGEVGDLVVGRITAIGMKRWSVDIHSNKSAILM
LSSVNLPGGVQRIRTYEDQLQMRSFYQEDDLISAEVQNIMSDGSVSLHTR
SLKYGKLENGLLVTVQPSLIKRLKQHFITLPFGVDVILGTNGFIWITRSI
EQGAASSSADDSAPLAEVLQQQRQVHASTPILPEAREKICRVRNSVEALS
QVYHPVDPDAIVEVYNASLSRGFAAKDMLQGDNILSITEGLRL*
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mRNA from alignment at H-akashiwo_Contig884:17676..18557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig884.3.1 ID=mRNA_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=882bp|location=Sequence derived from alignment at H-akashiwo_Contig884:17676..18557- (Heterosigma akashiwo CCMP452)
AATGTTGCTGACCATGCTATTGTTGTGCCTGGTGAAACCATTACAGCTGA ACCAGGCTTTATTCGAGGCCACGGTACCTACATGACAGATCCAGATGAGG ATCAAGATGAGGAAGGTCAGCAAAATCTCGTTGCTGCTGTAGCAGGGGTG GTAGAGCGAGTAAATAAGCTGATATCTGTTCGACCGATTAAGTCTAGGTA TATTGGTGAAGTTGGAGATCTGGTTGTCGGTAGAATCACAGCTATTGGGA TGAAGAGATGGAGTGTGGATATTCACTCGAACAAGAGTGCCATTCTCATG CTTTCGTCTGTCAACCTTCCAGGAGGAGTTCAGCGGATTCGTACTTACGA GGACCAGCTTCAAATGCGATCTTTCTACCAAGAAGATGACCTAATAAGCG CTGAGGTTCAAAATATTATGTCTGATGGATCTGTGTCGCTGCACACAAGA AGCTTGAAGTATGGTAAGCTTGAAAATGGTCTTCTTGTGACCGTCCAGCC TTCACTGATCAAACGCCTGAAGCAACATTTCATTACTCTTCCCTTTGGAG TTGATGTTATTCTTGGCACTAATGGGTTTATATGGATCACCCGTTCGATT GAGCAAGGAGCAGCATCATCATCTGCCGATGACAGTGCCCCATTGGCTGA AGTCTTGCAGCAGCAAAGACAGGTACATGCCTCAACACCCATCCTTCCAG AGGCAAGGGAAAAAATATGCCGGGTTAGAAATTCAGTTGAGGCGCTGAGC CAGGTCTACCACCCTGTTGATCCTGATGCAATTGTTGAAGTCTACAATGC CAGTCTTTCCCGAGGCTTTGCTGCAAAAGATATGTTGCAAGGAGATAATA TTTTGAGCATTACTGAGGGTCTCCGACTTTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig884:17676..18557-

>mRNA_H-akashiwo_Contig884.3.1 ID=mRNA_H-akashiwo_Contig884.3.1|Name=mRNA_H-akashiwo_Contig884.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=882bp|location=Sequence derived from alignment at H-akashiwo_Contig884:17676..18557- (Heterosigma akashiwo CCMP452)
AATGTTGCTGACCATGCTATTGTTGTGCCTGGTGAAACCATTACAGCTGA
ACCAGGCTTTATTCGAGGCCACGGTACCTACATGACAGATCCAGATGAGG
ATCAAGATGAGGAAGGTCAGCAAAATCTCGTTGCTGCTGTAGCAGGGGTG
GTAGAGCGAGTAAATAAGCTGATATCTGTTCGACCGATTAAGTCTAGGTA
TATTGGTGAAGTTGGAGATCTGGTTGTCGGTAGAATCACAGCTATTGGGA
TGAAGAGATGGAGTGTGGATATTCACTCGAACAAGAGTGCCATTCTCATG
CTTTCGTCTGTCAACCTTCCAGGAGGAGTTCAGCGGATTCGTACTTACGA
GGACCAGCTTCAAATGCGATCTTTCTACCAAGAAGATGACCTAATAAGCG
CTGAGGTTCAAAATATTATGTCTGATGGATCTGTGTCGCTGCACACAAGA
AGCTTGAAGTATGGTAAGCTTGAAAATGGTCTTCTTGTGACCGTCCAGCC
TTCACTGATCAAACGCCTGAAGCAACATTTCATTACTCTTCCCTTTGGAG
TTGATGTTATTCTTGGCACTAATGGGTTTATATGGATCACCCGTTCGATT
GAGCAAGGAGCAGCATCATCATCTGCCGATGACAGTGCCCCATTGGCTGA
AGTCTTGCAGCAGCAAAGACAGGTACATGCCTCAACACCCATCCTTCCAG
AGGCAAGGGAAAAAATATGCCGGGTTAGAAATTCAGTTGAGGCGCTGAGC
CAGGTCTACCACCCTGTTGATCCTGATGCAATTGTTGAAGTCTACAATGC
CAGTCTTTCCCGAGGCTTTGCTGCAAAAGATATGTTGCAAGGAGATAATA
TTTTGAGCATTACTGAGGGTCTCCGACTTTGA
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