mRNA_H-akashiwo_Contig880.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig880.1.1
Unique NamemRNA_H-akashiwo_Contig880.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig880.1.1 vs. uniprot
Match: A0A7S4DJM1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DJM1_HETAK)

HSP 1 Score: 285 bits (728), Expect = 6.000e-96
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 1
Query:   85 MAEVTPRNKKRKVEEQPDTNGLSSPLLKTPHKVLKEVQDGNEAGQIAGQQSVKAVQALCSCVVAMSSEDKAEASSAEGVLKDLLDAHVDPNYIDDEILRKMGGSPLFLAAKLDVPKAVEMLLSAGASLVQGNDEETPLQAAIRLDHTG 528
            MAEVTPRNKKRKVEEQPDTNGLSSPLLKTPHKVLKEVQDGNEAGQIAGQQSVKAVQALCSCVVAMSSEDKAEASSAEGVLKDLLDAHVDPNYIDDEILRKMGGSPLFLAAKLDVPKAVEMLLSAGASLVQGNDEETPLQAAIRLDHTG
Sbjct:    1 MAEVTPRNKKRKVEEQPDTNGLSSPLLKTPHKVLKEVQDGNEAGQIAGQQSVKAVQALCSCVVAMSSEDKAEASSAEGVLKDLLDAHVDPNYIDDEILRKMGGSPLFLAAKLDVPKAVEMLLSAGASLVQGNDEETPLQAAIRLDHTG 148          
BLAST of mRNA_H-akashiwo_Contig880.1.1 vs. uniprot
Match: A0A7S2XW44_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW44_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.200e-23
Identity = 71/195 (36.41%), Postives = 102/195 (52.31%), Query Frame = 1
Query:   97 TPRNKKRKVEEQPDTNGLSSPLLKTPHKVLKEVQ-DGNEAGQIAGQQ-------SVKAVQALCSCVVAMSSE-----------------------------DKAEASSAEG------------VLKDLLDAHVDPNYIDDEILRKMGGSPLFLAAKLDVPKAVEMLLSAGASLVQGNDEETPLQAAIRLDHTGSA 534
            TPR K+ ++ E    + L+  +L+TP  VL+EVQ + N AG  + +Q       S +AVQALCSCVVAM+S                              +  + ++ +G            +LK LL+ HVDPNY  + +  KMGG+PL+LAAKLDVP A ++L+  GASLVQ  + + P Q A+ L H+  A
Sbjct:    3 TPRVKRARLSEGGTKDTLA--ILRTPKAVLREVQKESNAAGSASKKQHQRGKIKSARAVQALCSCVVAMASHAGSTDSPSGRRSSFDPSGGPPILYSNRALENGQGAAGQGGGGDLDDSDAADLLKSLLEEHVDPNYAGEGVAGKMGGTPLYLAAKLDVPAAAQILVDHGASLVQDFEGQNPFQVAVSLGHSNVA 195          
BLAST of mRNA_H-akashiwo_Contig880.1.1 vs. uniprot
Match: A0A7S2FHQ9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHQ9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 8.150e-5
Identity = 49/138 (35.51%), Postives = 68/138 (49.28%), Query Frame = 1
Query:  139 TNGLSSP---LLKTPHKVLKE-VQDGNEAGQIAGQQSVKAVQALCSCVVAMSSEDKAEASSAEGVLKDLLDA----------HVDPNYIDDEILRKMGGSPLFLAAKLDVPKAVEMLLSAGASLVQGNDEETPLQAAI 510
            T  L+SP   LL +P    K  +QD  +        +  A  AL +CVVA  S  K     +   L++L+DA          + DP   D E L K+ G+PLFLAAKL++    E+L+  GAS+V      TPLQ A+
Sbjct:   13 TLALTSPQHSLLVSPRSAWKRCMQDAEDID------AKTACTALLNCVVACGS--KVTEDDSFDKLRELMDALSQETLNEALNFDPKG-DKEALAKLSGTPLFLAAKLNLDGVAEVLIEHGASMVHKWKGVTPLQIAM 141          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig880.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S4DJM1_HETAK6.000e-96100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2XW44_9STRA1.200e-2336.41Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2FHQ9_9STRA8.150e-535.51Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig880contigH-akashiwo_Contig880:8547..17051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size542
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-26_006620.1
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388022.3198085-CDS-H-akashiwo_Contig880:8546..86121681388022.3198085-CDS-H-akashiwo_Contig880:8546..8612Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig880 8547..8612 -
1681388022.3332362-CDS-H-akashiwo_Contig880:16140..162301681388022.3332362-CDS-H-akashiwo_Contig880:16140..16230Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig880 16141..16230 -
1681388022.3440163-CDS-H-akashiwo_Contig880:16468..166001681388022.3440163-CDS-H-akashiwo_Contig880:16468..16600Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig880 16469..16600 -
1681388022.3552225-CDS-H-akashiwo_Contig880:16695..168441681388022.3552225-CDS-H-akashiwo_Contig880:16695..16844Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig880 16696..16844 -
1681388022.367315-CDS-H-akashiwo_Contig880:16948..170511681388022.367315-CDS-H-akashiwo_Contig880:16948..17051Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig880 16949..17051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig880.1.1prot_H-akashiwo_Contig880.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig880 8547..17051 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig880.1.1

>prot_H-akashiwo_Contig880.1.1 ID=prot_H-akashiwo_Contig880.1.1|Name=mRNA_H-akashiwo_Contig880.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=180bp
HLRQQLKLDCGDWIVGSRLSLDYLPPLIMAEVTPRNKKRKVEEQPDTNGL
SSPLLKTPHKVLKEVQDGNEAGQIAGQQSVKAVQALCSCVVAMSSEDKAE
ASSAEGVLKDLLDAHVDPNYIDDEILRKMGGSPLFLAAKLDVPKAVEMLL
SAGASLVQGNDEETPLQAAIRLDHTGSAS*
back to top

mRNA from alignment at H-akashiwo_Contig880:8547..17051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig880.1.1 ID=mRNA_H-akashiwo_Contig880.1.1|Name=mRNA_H-akashiwo_Contig880.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=8505bp|location=Sequence derived from alignment at H-akashiwo_Contig880:8547..17051- (Heterosigma akashiwo CCMP452)
CATTTAAGGCAACAATTGAAATTGGATTGTGGAGATTGGATTGTCGGGTC TAGGCTTTCTCTCGACTATTTACCTCCACTTATAATGGCTGAAGTTACTC CAAGTACGTTCTGGTCTTTCTTAACCTACTATACCTTGATAGTGGTTTCA CTTGACTGTTCAGGATTGATGTACTACCCGTCGTCGTAATTTAATCCTCT CTGGCAGGGAATAAGAAGAGAAAGGTGGAAGAGCAGCCAGATACAAATGG TCTGAGTTCGCCGCTTCTTAAGACCCCCCATAAAGTGTTAAAGGAAGTTC AGGACGGGAATGAAGCGGGCCAGATCGCAGGCCAACAATCCGTTAAGGCT GTTCAGGTGAAATGAGGACTGGGTGTTTTACCCTCTCTTTCAAAGCTACA AGCGTTGTATTAATTTTATGCAATTATGTCCATCGTTTTTGTGATAATCA GGCTCTATGTAGTTGTGTGGTTGCTATGTCTTCTGAAGATAAGGCTGAAG CTTCCTCAGCAGAGGGTGTACTCAAAGATCTACTTGATGCGCACGTGGAC CCAAACTACATCGATGATGAAATCTTAAGAAAGGTAAGCAAAAATTGAAA GTTTAAATTTATATTCGGACGTTGCATTGTAATACTCTCCCAGGTGGTAC ATCTATGATCTAGTACATTGTGATTTGTGTGTGCTGTTTGTTTGCTTGTT CTTCATTGGTTTTTTTTTTTTTTTTCAAAACTACTACAGCTGTTTGCTGC ATTTCAATTCATTTACCTTGATTGCAACTAGCTTGAGTTTTGCTTGGCTG TTCATCCTTATTTTTGGTCAGATGGGGGGCAGTCCATTATTTCTTGCTGC CAAGCTAGATGTGCCCAAGGCTGTGGAAATGCTACTTAGTGCTGGTGCTT CTCTTGTGCAGGTTTGTTACGCGCTAAGTGTATTTTTACCACAAACTTTG AGTGCATCCTCACAGCAGCACACTATCCTGTTCATGAAAAGTCCACTTGA CTTTCTTCATCAAAGTAGAGGAATGTACTCACTTGCCTGATGCAGGAGAA GTTTTGGCTGATGTTTCGATGCACAGCTCAGAATTTCAGGATGATATATA TTATATTTCTTTAGTACGAGAAAGAAGTGCAGTTCAAATCAAGTGTTAAC AAAGTGGTAACTTGCTGTGTGACAGCGGTGTTTCCCAAACTTCTTTAATT GAGATGCAAGTATTATAATAAAAAGGCAATGTTTCATCTCATCATCCTCA CAATCTTCCACTTCCCCCCTTCTACTACTATGTACTGATGTGCGGCAGCA GCAGCAACACCTGAACAGGCATTCGCCACGACCACAATCACCACCTATAT TTTGTAGTTCACACATACGTGGCAAAACCAACTATGTAGGACTGTGGTAT CCTTCAATACTAGTGGAGCAACCTCCTGTCTTCAATGAGAGAATCACCAA ACAAAGAAGTAGTTGCTCCATAAGCTTTCATCGTGATTTATGTTTTGCTC TCCGTAGAGCAAAACACCTGATTTCCGTTTATCTCGATTTCAATCGTTCT TCATTCCACACCTTCAATAACATAAGTCACTCATAAAGTTGTTGTGGCTT CTTCTTTTTCCCAACAAACTCGTTTTCCCGCCAATCTACCATTACAGGAT TGCCTTTACTTGCGCGCCGGCGACCGCGGCTCGCCTCTCGCCTCTGACTG CGGAATCATGCCGTGCTCATCATCGCTCCGTAGTCGGTGTCAGGCTTAAG GGGACATCGCTCTATGGGAACTTGGCCAATCACAATGCTGGGCGCGCGAA CCGAGACTCGAACCCGACCGCAACTAAAAGCGAGGTCATGCGCGCTACTC ACTGAGCAATCAGCGCTTGTATACTTCTGTCAACAATTTAAAACATATGA CCTTCAACCAAAAAATTCCGAACTGCCTCCTCAGCCAATTTTAAAAACGC GGAAAAATCCGCGTTCTACGTGCGGGAAAACCCGGTTGAATAGCTCAGAT TGTAGCAATTCAACCGGGTTTTCCCACAAGTAGAACGTTTTTTTTTTTTT CGGGGGATTTGGCCACATTCTTGTATACTTTAGCCTGACACCGACTCCGT ACGAGTGGCACAAGCAAGCGCGGATGAACAAAGAACATTTGCGCGGTACC TCGGGACCGCACAAACAACGTCAAGTAATATTTGTTTCCTTGTAGGCAGA AATCAACACACCAGACTGTCGCGACCTGAAAATGTATGTCGTATGTCGCC CCTTTTCTAGGAGCCACAAGGCCTTCGTGAAGAATAATTAGTTTAACAAA GAATCAATTTCAATTGTGCGTAAGCTTGGCAGAAAAATAGAACTTCGTGT CATTTCTATACATCATCTGATACCTCTGCATCTTCTTGGTGAGCTGCATG CGCAGTTGTTTTCCTAGTATAGTTATGATATGTTACGACTTTCGAACTTC ATCTTCCATGATGCTGTGTGAACTCTGTCAAATATTTATATTATTCACGA CTCAAGCGCTGATGCCAGCATTGGCTCTTCTTGATTCTACTCCGAGCAAA GCTCAACTGTGTTCCAAGAATCTTTCTCTATCTTGAGTTTTTCCTATGGT TGCATGTTTTCTCAATGTGTTCTCATCAGAAAGCAACTGTTCTCATCGAG CTACATGCCTCTCAAGCATCTGTCTTTGATCTTCTAAGAATAATATATTG GCAATGAAGACAACAATAATCAGAACAGAACACAAACACAAACTATATAC CTTCTTCGAGGACTGGACAGATTCTACTTGTACTTCGACTGATTGTGTTC TACATGATGGTTCAGCCACATCAGAAATCTTAGAAAAAGAAGAAAGAAAA AAAGAAAAAAGGGAAAGAAAGAAAAATGCAAATGACATGAGCAGAGGTAG CATTATAGCCTAGCTGAACTATTTTCTCCACTTTGTGCTTATACGTAGAC AAAAAAAAAAAAAAAAAAAAAAAAAAATGATGATTTTATTCTTCTCTGGC TTTTGGTTCTTTCAGTTATATTTGCACTTGCATAAGCCAGACTGCATGTT CTCTGTGTGACGGTTTCAGACTCTTCTTCTGAAGAATAGTTTTCCATAGC TAGTCACAATTCTACTATTGTTTAATTGATTTTTTTGGCAGTCTCTGACA AGACAGGGTTTTACAGATTGATTTTTCTTTCTACTTTGACTTTAGTGTCT TTGACATGGAGCAGACCAGCTCTGGTCTCAGGCCTCCCACATCACCAAGG GGCCATACATTAATGACATCATCAACATTTTCCTGATTCTGACCCCCCCC AAGTCATCACAACCTCCCCCTCTTCCCCTTGAAACCCCTTTACACCTCTC CCTCTTTTTTTCCAAAGTCATCATGTTGCATACCCCCCCCCCCCTTCGAT GATGTCATTAATGTATGACTCCCAACCACTGTAGACAGATGTATTCATTT TTTATTTATTAGAAAAAAAGCTATCCTAACAACACCCCACCCTATGGAAA CTATGCTGCATTTACTCCACCCCACAGCTTGCCTCTACTACAGCTTCAAA CCTTCATCAGGCTTCCTTGGGTGATAAAAATGGGGAATTTATCACCCAAG GAAGCCTGATGAAGGTTTGAAGCTGTAGAGGCAAGCTGTGGGTGGAGTCC CCTAAATGCAGCATAGTTTCCATAGGGTGGGGTGTTGTTAGGATAGCTTT TTTTTTTCTAATCAATAAAAATGAATACATCTGTCTACAGTGGTTGGTGA TGGGAGGCCTGAGACCAGAGCTGGTCTGCTCCATGTCAAAGACACTAAAG TCAAAGTAGAAAGAAAAAACAATCTACTATTGTTTGTTATATTTCGTGAT GATGATCATCAGCTGTACTGCTACTGCTGTGTTGTCATTCCCGTTCACCA CCACAATCACCATCAACAACAACACCACTGGCTGGAGGCTTTGCCTCTTC TGGGAATCCAGCCATGATGGCCATACCACCCCTTACTACACTGAATTGCT AAGTTAAAGTCCAAACCCCTTTGACCCCTTTAACATGATATATTCAAGCA GCATTTTAAATAAAGCCAGGTGTACGTATATACTAGAAAGTGGTGTTCAT CGGCCGACTGGGTTTGTCTTTCAGTCGTCAATTGTGGCTCTTGGCGGCAG ACAATTTTCCCCCCTTGGAAACGCATGCGCAGATATTAATCTCAAGGGCT CTGCAACAACAATTGTGAGAGATTTGAGTTCAACGAATACGCAAACTCAC CTAGTATATGAAGGTCAATCTTCAAATACCGAAAGCTACGGGTCAGTTGA GGGTCAAGCTCAATGGTTCCGCTCTCTCTCGATCTGCGTCATTTCTATAG CCGCCTTAAGAAGCTCGTTTTTCTGCATTAATTTGCTATCGAATACATGG CTCGAGGTAGTACGCAAATACGCAATTTTTCTCGTACTTGTCGTACTTGA GTACGCTGTACCCAAGTACGACGAGTACCCAAGTACGCGAAAAAATGTCC CCGCCACTGTACGCCGGGCGGGCCCGGTCTTTGCCCCTGCGGACATAACT TCCGCCCGTACCAGAACCATGCGCAATAAAAAAAATGAAACTGCAAAATA TAGAAGGGATAAGAAGAAGAAGAAAGCTCGCGAAGAAGCGAAAAATACAA GGACAACGCGCAGCAGCAGATAATACATACACATACCACGAAGCGAAGAA CCATTTGCACATAGTAGACGACAGATACGATTTTTCAATTCATCGCAAAA TGCAAATCAGGATGAAGAAAAGGGTGATGGCAGTACCCAAACGTAAGAGG AAGAGGGCAAAGCGGCGTGGGTGGAAGCACCATGGCATAATGTGCGAATA TAAAATCTCGAGACAAATACAAGGACTGTGGGGCCGAATTCAAGGGGAGC TATACAAGATGGAAGCAGCACGTGTTGCCGTCAGTTTGAAACCAGGCACA CGCAAAAATGTGAAGAGGTGCCCAGTCCTCAATTTGGAGGCCATAGAAAT GGTAAGAGGAGGGCCACCCAGGATGAGGGAGGAGGCTGGTGATGGGAATT TCAAACTACAAATTAAAAAAATTGGGCCATTTTTAAGGCTGGAAAAACAG ATTGGCCATCTATCCCTTACCTGCTGATCCCAAAAAAAAAAAAAAAAAAT TAAATTAAAAAATCACTCAGGACCCCAAGTACCCATAAGTACCCAAGTAC CACAGATTGGGTACTTATGGGTACTTGGGGTACTTGGGGTACTTAGGGTA CTCCCTTGAGCCATGATCGAATATATGAAAAGCTACGGGTGAGTTGACCC TCGAACCTTCCAATGCTATGTCCAAGAATGCTTCACTTTTTACTGGGAGA TCCCGTCAGGTTACTGGACACCTTGGAGTAAACATATATTCCGGGGTGAA AAAGGGGTAGTGATTCTTCTGAAAATTCTAAATTCCAATTTTTTTGCCAA AAAAATGTACCTGTTTTATACCCCATCAAAAAGCAAAATCATTTACAAAA CACGCATCTCCCGACACCCGAGGTTTCAAGCGTTTTCAAACCAAAAAAAA AGGGCAATTTTCCTGGGCAAATTTGCGAACGAGCCTGTTTTTACCGCTCA AAAATCTCCTCTTCTGCTTCTCACTCCTGGTGCTGGTTTTTTATCATAAA AACAATTACACAACGAAGAGTTTTCGATTGATTGGTATATTGGCAAGCGG TCTGGCAAAGTGGGGAATCGATGTCGATAGCCCAGACTTGCCAACTCATA CCATTGCTATGATGCTTAATGTACGAGAACGTTCTGCCATCTCGTTTTGA CCAGCCAATTCCATCCAAAAGGCAAGTCATGAATGCGTTCCTTCTGCCGA CGAAGTGCAAAATTCAGCAGGTATATATGACAATATATACATACTCAGAC AATTTAGAAAGCATTCAGCTCCAAATCTTTAACTATCTTATTGGATGGCG CTTCAAAAGGGACCTCAATCAGTGTATATAGTTCAAAATCAAGTGTTTCG AACACGCATAAATCTTCCCATGTCCTCTGCCTTGACCATTTTGCTTCGGG CAGATTGACAGCAAAGCAGGAGTAATCAGCAAGCACTGCTGGTATTTGGC TTCCTCACTGATAAAAGCGTGGTTAAATGCAGTTGATAGTTAGAATGCCG TGGTACTGGTGGTGGTGTGGGGGGGGCTATGTTTCGAAGAACCTGTGAAG CTGCTTCGCACACCTTGTTTTCTACTCCTTCTTTCTATTCTTCTGTCTTG TTGTTGATCCTTCTCACCATCAGAGGAAGAAGAAAAAGAAGATAACAAAT TGCAGAAACATGAAGTGATAACGTCGTTTGCTATTATTTGCCTGCCTTAT CAAATTTGCGTGGAATAATAATCATTTTTTTTTTAATAATACAAAAAAAT ACAAAAATTTCCAATAGTGACCCTGTTTGGCACCGCTTTAGCGTTTTTTT TTCCTCTGGGAAAAAGGCTGAGGAGCAATCAACTGTTCCTCTGTTCGCAT CGTCTTTGTCCTTGGCCTAGGATCAAAAAGTCTCCCAAAAAATAAGTGGG TGGTGATCTCATGAATCCGATACCCATTTGATTTTGAAGTTTAAATCGGT GGGGAAATCGGCCGGCGATACGTCCAGCCACCAGACCACAAATACTTATC AGCAGCGGTCCAAAATTTCTCTCATTGAGACAATCCGGAGTTGGAGTCAC GCTAAAGTATACAAGAATTTGGCGAATAACCCCCGAAAAAGAAAAAAACG TTCTAAAAAGGCGCCGTCCGTGGTCAATAGCTCAAAATGCGCAGAAGAAT CTTCCGAGAATTTTGAGCTTTTGACCACGGACGGCGCCATTTTAGTTTTT GAGTTATATATTTTTCCCCGTAGGGCAGTATAATCGCGATCCACGAAAAT ACTAAAAACACCGAATTTTCAATCGAAGGTCATATGTTTTAAGTCTTCGC AATCGCACAAGGACAACTGGCCGTACGGCTAGAGCGCGTGACTTGCTTGT TTTTTACGTCAGCTCCGGGTTCGAGTCTGGGCGCGCGAAATCTGCTGTAC TTCCCATAGAGCGCTGTCCCCTTTAGCCTGACACCGACTCCGGGTCAAAA TATATATGTTGCCTATAAAAAAACGCTAAAGGGGGTTCAAAAAGGGCCGT TTTTGGAAGATTTTTGTAAAATTTCTGGAATTGATAGTTGTGTTGGGAAA ACATACATCATACATAATCTTATAAATTTTAGGCCATGTTGTATTCTTAC AAATTTTAGGCCATGTTGTATTCAAAACTTCTTCTTGCCTCTTCTGCATT TCTAGCCTGCTGATTACATGATGAGGAAGAGGAACAAGAAGCAGAAGGAG GAGAAGAAGGAAAGAAAAGCAAGAAAGATAAGCATACTGTACAACAGAAT TAGAAAGACAACCAACCAGATTCGAGACTTCTATAATGTTTGATGAGTGA ATTCATCCCTATCACTTCGAGTTTTTCTTTCAGTTTTTCCACCATCTCAT CGACTCTCTGGTCAACCACCACTTCAACTTCGACTAGAGTGTATAGCTGC TCTATCTGGCAACGCTTTTCAGTTCTTGGGCAAACTTTGGGAGGCTCCCG TTTGATTTCCATGGGTTTACAAACTCTGAAGGTTGCTGGATTTTTCGTTT CTTCATCAACCCTGACTTAAAACCAGCTGATTCTCCTCGTCTGGATTTGC ATGCATGCATTGATCTTTCCTCTGGCGCAAACCGCACACCTGCTGACTGT TTGCTTTCGCTTTCGGCCGACCCAAATGCAAATAATCACACTCGATGTAG GAATGTAGGTGTAGGCCACCAACAAAAAAAAAAAAGAAGAACAACAGAAG GGAGCAGCAGTACAGAAGAGGGGACGAAGAGGAGGAGGAGGACGAGACCG TGACAAAAACAAACCGAATTCCTCCATCCAGGCAGGAGGAGCTATTCAGA GGGAAAATGCGGGTTTTCGGGAACTAAAGAGAGAAATTCGCATTTTTTTT TTTTTTCAAATACGGCTTAACCTCGGGCGCCGGTAGATACGCTGCGTTTT GGCGTATGCTTTTTGTGTTTCGAGGGGGTCAAATAGGTTTTTTTTTTCGC TTCTCGGATTTTGGAAATTCCCAAGCAAATCCCACCCCTTTAGCGTTTTT TTAGGCTGTTGTTGCTGGCGTTTTTTTGGTTAATGTTGATGGGCAAGTTG CTTGGAGAAGGCTTCCCCCCACTTCTCTTTTCAGCCCGACCGCCGACCTC CCCAAAACACACACCCTCGTCCCCAGGGCACCTGCTACTGACAAAAAGGC CCCTGCGCCGCTGGGTTCAAGGCTCACTTGATCTGTGGAAGGGCGATCAT CAGCAGCTGGCTCCCGCACAGGATTCGGGTCTGCTCACTACCTTCTCGCC GCCCACCCCAACCCCCCGCCCCTCGCCCCCCGGACGCAGGGGAACGACGA GGAGACCCCTCTGCAGGCCGCCATCCGGCTGGACCACACGGGGTCTGCCA GCTGA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig880:8547..17051-

>mRNA_H-akashiwo_Contig880.1.1 ID=mRNA_H-akashiwo_Contig880.1.1|Name=mRNA_H-akashiwo_Contig880.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=540bp|location=Sequence derived from alignment at H-akashiwo_Contig880:8547..17051- (Heterosigma akashiwo CCMP452)
CATTTAAGGCAACAATTGAAATTGGATTGTGGAGATTGGATTGTCGGGTC
TAGGCTTTCTCTCGACTATTTACCTCCACTTATAATGGCTGAAGTTACTC
CAAGGAATAAGAAGAGAAAGGTGGAAGAGCAGCCAGATACAAATGGTCTG
AGTTCGCCGCTTCTTAAGACCCCCCATAAAGTGTTAAAGGAAGTTCAGGA
CGGGAATGAAGCGGGCCAGATCGCAGGCCAACAATCCGTTAAGGCTGTTC
AGGCTCTATGTAGTTGTGTGGTTGCTATGTCTTCTGAAGATAAGGCTGAA
GCTTCCTCAGCAGAGGGTGTACTCAAAGATCTACTTGATGCGCACGTGGA
CCCAAACTACATCGATGATGAAATCTTAAGAAAGATGGGGGGCAGTCCAT
TATTTCTTGCTGCCAAGCTAGATGTGCCCAAGGCTGTGGAAATGCTACTT
AGTGCTGGTGCTTCTCTTGTGCAGGGGAACGACGAGGAGACCCCTCTGCA
GGCCGCCATCCGGCTGGACCACACGGGGTCTGCCAGCTGA
back to top