mRNA_H-akashiwo_Contig879.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig879.6.1
Unique NamemRNA_H-akashiwo_Contig879.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A7S3XXV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXV3_HETAK)

HSP 1 Score: 261 bits (668), Expect = 2.250e-85
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGATSKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTI VDNLSAQFIAEGATSKK KFI++KFHFIRDCIAKGLVRVIHI SEENLADLFTKPLG
Sbjct:  192 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTIFVDNLSAQFIAEGATSKKCKFIEIKFHFIRDCIAKGLVRVIHISSEENLADLFTKPLG 326          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A7S4D8N3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8N3_HETAK)

HSP 1 Score: 261 bits (668), Expect = 5.160e-80
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGATSKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTI VDNLSAQFIAEGATSKK KFI++KFHFIRDCIAKGLVRVIHI SEENLADLFTKPLG
Sbjct:  740 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTIFVDNLSAQFIAEGATSKKCKFIEIKFHFIRDCIAKGLVRVIHISSEENLADLFTKPLG 874          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A7S4D6I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6I2_HETAK)

HSP 1 Score: 172 bits (435), Expect = 1.270e-48
Identity = 83/134 (61.94%), Postives = 107/134 (79.85%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGATSKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPL 402
            FSDSDWA+D DDRKSTTG  +F+GLCL+ WK+LKQ L ALS+ ++EY+ALA+T + +L  R  L  +G+EQ GPT + VDN+SA  IAEGAT K SKFI L++HFIRD IA+G V+V+HI +E N++DLFTKPL
Sbjct:  368 FSDSDWAADPDDRKSTTGMALFLGLCLIMWKSLKQPLVALSTAESEYIALAYTIKHVLLQRLQLCHVGYEQQGPTPVFVDNISAMHIAEGAT-KSSKFIDLRWHFIRDAIARGEVKVVHIDTEHNISDLFTKPL 500          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A2I0WA95_9ASPA (Putative mitochondrial protein n=3 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WA95_9ASPA)

HSP 1 Score: 127 bits (318), Expect = 4.070e-33
Identity = 65/136 (47.79%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGATSK-KSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            +SDSDWA D  DRKSTTGYC F+G  L++W+  KQ   A SST+AEY ALA     I++ R LLKE     S PT +  DN+S+  +A     + ++K I++ FHF+R+CI   L+ V +I + + LADLFTKPL 
Sbjct:  138 YSDSDWAGDPADRKSTTGYCAFLGSNLISWQVKKQKTVARSSTEAEYRALATATTDIIWLRRLLKEFSIPTSAPTVLLCDNISSIALANNPIFRARTKHIEIDFHFVRECIKNKLITVSYIHTVDQLADLFTKPLS 273          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A2I0VLT3_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VLT3_9ASPA)

HSP 1 Score: 125 bits (315), Expect = 7.280e-32
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGAT-SKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            +SDSDWA D  DR+STTGYC F+G  L++W+  KQ   A SST+AEY ALA     I++ + LL E G   S PTT+  DN+S+  +A       ++K I++ FHF+R+CI   L++V HI + + LADLFTK L 
Sbjct:  231 YSDSDWAGDPIDRRSTTGYCAFLGSNLISWQVKKQKTVARSSTEAEYRALATAAMDIIWLQRLLGEFGITSSSPTTLFCDNISSIALANNPVFHARTKHIEIDFHFVRECINNRLLQVAHIHTTDQLADLFTKALS 366          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A371GS42_MUCPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371GS42_MUCPR)

HSP 1 Score: 124 bits (312), Expect = 8.840e-32
Identity = 64/136 (47.06%), Postives = 90/136 (66.18%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVAL-AFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGAT-SKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPL 402
            F DSD+A D+DDRKSTTG+  F+G C   W + KQ +  LS+ +AEYVA  + TCQ I + R LLKE    Q   T I +DN SAQ +A+     ++SK I  ++HFIR+CI K  V ++H+ +++ +AD+FTKPL
Sbjct:  201 FCDSDFAGDVDDRKSTTGFVFFMGGCAFTWNSKKQAIVTLSTCEAEYVAATSCTCQAI-WLRRLLKEFNMNQEESTKIHIDNKSAQILAKNPVFHERSKHIDTRYHFIRECIVKKEVELVHVKTQDQVADIFTKPL 335          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: UPI0009F1B6C9 (uncharacterized protein LOC110092095 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F1B6C9)

HSP 1 Score: 123 bits (309), Expect = 9.190e-32
Identity = 64/136 (47.06%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGAT-SKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            + DSDWA D  DRKSTTGYC F+G  L++W   KQ   A SST+AEY A+A     I++ R LL+E GF Q+ PT +  DN SA  +A       ++K I++  HFIR+CI    ++V HI S++ LAD FTK L 
Sbjct:  134 YVDSDWAGDQQDRKSTTGYCNFLGNTLISWSVKKQTTIARSSTEAEYRAIAAVTTEIIWLRRLLEEFGFAQTSPTILYCDNTSAIVLANNPVYHARTKHIEVDCHFIRECIKNQSIQVHHISSKDQLADFFTKSLS 269          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A2I0W5F1_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0W5F1_9ASPA)

HSP 1 Score: 120 bits (301), Expect = 9.220e-32
Identity = 60/136 (44.12%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGATSK-KSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            FSD+DWASD+ DRKS +G+C F+G  L++W   KQ   A SST+AEY +L+     +L+ R L  E+   QS PTTI  DN SA  IA+      ++K I++ +HFIR  I+ G +++ HI S++ +AD+ TKP  
Sbjct:   39 FSDADWASDITDRKSVSGFCTFLGPNLISWTVKKQATVAKSSTEAEYRSLSAAASDVLWLRRLTAELDMPQSSPTTIYCDNTSAMAIAKNLVFHGRTKHIEIDYHFIRQQISSGNIQLAHISSKDQIADILTKPFS 174          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: UPI0009F67E01 (uncharacterized protein LOC110114696 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0009F67E01)

HSP 1 Score: 124 bits (310), Expect = 9.400e-32
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGAT-SKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            ++DSDWA D  DRKSTTGYC F+G   ++W A KQ   A SST+AEY A+A T   I++ R LL+E+   Q+ PT +  DN SA  +A       ++K I++  HFIR+CI    ++V HI S++ +ADLFTKPL 
Sbjct:  154 YTDSDWAGDSQDRKSTTGYCNFLGSTPISWCAKKQTTVARSSTEAEYRAIALTTTEIIWLRRLLEELDCIQAKPTPLYCDNTSAIALANNPVYHARTKHIEIDCHFIRECIKNQFIQVHHIASKDQIADLFTKPLS 289          
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Match: A0A803NKY9_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803NKY9_CANSA)

HSP 1 Score: 119 bits (299), Expect = 9.540e-32
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGAT-SKKSKFIKLKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG 405
            FSD+DWA  +DDRKSTTGYC+++G  L+ W + KQ   A SSTK EY AL+ T   + +   L KE+G     P  I  DN  A+ +A       ++K I++  H+IRD + +G + + HIP+ E  AD+FTK + 
Sbjct:   13 FSDADWAGSIDDRKSTTGYCVYLGGNLITWSSKKQKAVAKSSTKVEYRALSQTASEVAWLNSLFKELGIPHKLPAIIWCDNAGAKLLASNPIFHSRTKHIEVDVHYIRDQVKQGKIEIRHIPTSEQTADIFTKAIS 148          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig879.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XXV3_HETAK2.250e-8596.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D8N3_HETAK5.160e-8096.30Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6I2_HETAK1.270e-4861.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2I0WA95_9ASPA4.070e-3347.79Putative mitochondrial protein n=3 Tax=Dendrobium ... [more]
A0A2I0VLT3_9ASPA7.280e-3247.06Retrovirus-related Pol polyprotein from transposon... [more]
A0A371GS42_MUCPR8.840e-3247.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI0009F1B6C99.190e-3247.06uncharacterized protein LOC110092095 n=1 Tax=Dendr... [more]
A0A2I0W5F1_9ASPA9.220e-3244.12Retrovirus-related Pol polyprotein from transposon... [more]
UPI0009F67E019.400e-3247.06uncharacterized protein LOC110114696 n=2 Tax=Dendr... [more]
A0A803NKY9_CANSA9.540e-3241.91Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig879contigH-akashiwo_Contig879:358226..358630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7213.XP_004527479.1
PFAMsDUF4219,MBD,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size405
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.99e-28
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BI7U@33208|Metazoa,3CTS1@33213|Bilateria,41WYJ@6656|Arthropoda,3SQRW@50557|Insecta
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size405
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388021.6810415-CDS-H-akashiwo_Contig879:358225..3586301681388021.6810415-CDS-H-akashiwo_Contig879:358225..358630Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig879 358226..358630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig879.6.1prot_H-akashiwo_Contig879.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig879 358226..358630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig879.6.1

>prot_H-akashiwo_Contig879.6.1 ID=prot_H-akashiwo_Contig879.6.1|Name=mRNA_H-akashiwo_Contig879.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=135bp
FSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVAL
AFTCQVILFFRDLLKEIGFEQSGPTTISVDNLSAQFIAEGATSKKSKFIK
LKFHFIRDCIAKGLVRVIHIPSEENLADLFTKPLG
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mRNA from alignment at H-akashiwo_Contig879:358226..358630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig879.6.1 ID=mRNA_H-akashiwo_Contig879.6.1|Name=mRNA_H-akashiwo_Contig879.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=405bp|location=Sequence derived from alignment at H-akashiwo_Contig879:358226..358630+ (Heterosigma akashiwo CCMP452)
TTCAGCGACAGTGACTGGGCATCCGATCTGGATGACCGTAAGTCCACCAC TGGGTACTGCATCTTCATTGGTCTGTGCCTGGTTGCCTGGAAGGCGCTCA AGCAGGACTTGACTGCCCTGTCTTCTACAAAGGCGGAGTACGTTGCCCTT GCCTTCACCTGCCAGGTGATCCTCTTCTTCAGAGATCTATTGAAGGAGAT CGGCTTTGAGCAGTCTGGACCAACCACCATCTCCGTGGATAACCTGTCTG CCCAATTCATCGCGGAGGGAGCTACCAGCAAGAAGTCCAAGTTCATCAAG CTCAAGTTCCACTTCATCCGCGACTGCATTGCCAAGGGCCTTGTCAGGGT GATCCACATTCCCAGTGAGGAGAACCTTGCGGACCTTTTCACCAAGCCTC TTGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig879:358226..358630+

>mRNA_H-akashiwo_Contig879.6.1 ID=mRNA_H-akashiwo_Contig879.6.1|Name=mRNA_H-akashiwo_Contig879.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=405bp|location=Sequence derived from alignment at H-akashiwo_Contig879:358226..358630+ (Heterosigma akashiwo CCMP452)
TTCAGCGACAGTGACTGGGCATCCGATCTGGATGACCGTAAGTCCACCAC
TGGGTACTGCATCTTCATTGGTCTGTGCCTGGTTGCCTGGAAGGCGCTCA
AGCAGGACTTGACTGCCCTGTCTTCTACAAAGGCGGAGTACGTTGCCCTT
GCCTTCACCTGCCAGGTGATCCTCTTCTTCAGAGATCTATTGAAGGAGAT
CGGCTTTGAGCAGTCTGGACCAACCACCATCTCCGTGGATAACCTGTCTG
CCCAATTCATCGCGGAGGGAGCTACCAGCAAGAAGTCCAAGTTCATCAAG
CTCAAGTTCCACTTCATCCGCGACTGCATTGCCAAGGGCCTTGTCAGGGT
GATCCACATTCCCAGTGAGGAGAACCTTGCGGACCTTTTCACCAAGCCTC
TTGGG
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