mRNA_H-akashiwo_Contig879.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig879.3.1
Unique NamemRNA_H-akashiwo_Contig879.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig879.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig879contigH-akashiwo_Contig879:198208..204526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size216
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388021.5448546-UTR-H-akashiwo_Contig879:198207..1982571681388021.5448546-UTR-H-akashiwo_Contig879:198207..198257Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig879 198208..198257 -
1681388021.5780902-UTR-H-akashiwo_Contig879:204495..2045261681388021.5780902-UTR-H-akashiwo_Contig879:204495..204526Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig879 204496..204526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388021.5561366-CDS-H-akashiwo_Contig879:198257..1983241681388021.5561366-CDS-H-akashiwo_Contig879:198257..198324Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig879 198258..198324 -
1681388021.5671458-CDS-H-akashiwo_Contig879:204427..2044951681388021.5671458-CDS-H-akashiwo_Contig879:204427..204495Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig879 204428..204495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig879.3.1prot_H-akashiwo_Contig879.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig879 198258..204495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig879.3.1

>prot_H-akashiwo_Contig879.3.1 ID=prot_H-akashiwo_Contig879.3.1|Name=mRNA_H-akashiwo_Contig879.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=45bp
MLRQCTKCETAKKCAGPGFQVNRECNMQCFAACARILKTLTDLL*
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mRNA from alignment at H-akashiwo_Contig879:198208..204526-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig879.3.1 ID=mRNA_H-akashiwo_Contig879.3.1|Name=mRNA_H-akashiwo_Contig879.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6319bp|location=Sequence derived from alignment at H-akashiwo_Contig879:198208..204526- (Heterosigma akashiwo CCMP452)
GACCAAATAATCCTAGAGAGGTTGTACTCTTATGCTGAGGCAGTGTACAA
AGTGCGAGACAGCGAAGAAATGCGCAGGACCTGGCTTTCAAGTGAACCGG
TAAGGGGGAAACATTAAATATATACGGCCTTTGCATCCTTGGTGGTCCAT
GAAGCATTAGACTGGGCTTAAGTCTTCCTTTCCTTTGCCTAAAGCCCTGC
GGGCGACCTTACATAAATCAATGGAAACATTATGACTTCTTTGATAATGC
TGAGGTGCTGTGCAGAGAGACCCACTGGGGTAAGAGGTTGAAGAAGGAGG
CCATGTATATATATTGCAACAATGGTTGAGAACACTTTCAATGTCCAGAA
GGCCAGAGATTTGAACCCTATTTGTCTACTTCTGCTTCGGCACTTTTCAT
AGCTAGTTTTCTCGGTCCAGGGACGGGGACTGCGTGATGGTTGGTTTTTT
CGTTGTGCCGTGATCGCAGAAAAGATGTTATTTAGTGATGGCCGCCGCCA
CGTCCGTGTTTCCATCTCTTCTCGGTTCTCGGTTTTTTCAACATGCAATT
GCCATTCTCGAATAAGTGGTTTCAACCGCTTCATGGTTTTTTGATTCGTG
GATTTTTTGTTTTGGTGCTTTTATTTGGTATATATATTCTTCAATCCGGT
CTTTTTTCTTCTTTCCTTTTTACTAGTTAGGAGGCGTTGGTGCTGATGCT
CTGACAAGTCCCCTTTTCATTTCTTCGGAGATGGGATGTCTTCTGAGATA
GCTTTGTGATCTTACCTGATGAAGGGGAAACCGGAAACGTTATTACCTCT
AACAGCCTGTGATAATATGCTCCTTTGTTTTATTCACTGATTCGTCCACA
TGATTTCATTATACATATAGTTCTTCAAAATCTTACAAGAAACAATAATT
GCATCCATGGAAGGTTCTGCTTATACATAGAAGCTAAAGACTATTAGACG
GCTGTAAACTAAGTCTAACATCTATATACTTCTCATTGAGATGGAGCATG
GTATATCTTTTTTTTTTCATACTTTCTTTATTTATTGCCTGATCACATCC
TGAGGAAGGTCCTCTCTGCCAGCTGTTCGTCATGTTGAGCCATCTCTGAG
CTTGTCGACGTGAACCTTGTAGTGATTAGCGCTCGTATCATCTCGCTTTC
CAATATTCGCAAACATCACTTTGATGCACCTTGGGCCACCATCCTTCGCC
GACAACCTCCTTCTGTTACCGCTCTGTCAGGTCGCTGTACCCTTCCGTAA
GTCGCCCACTCCTGGAGCTTCCGACGCTATCTCCAATCCACGCCACTGCT
CCAGATCGCCATCGTTCCCAATCCTTGCCCTCCTCCGACTACATACCAAG
ATCCGATGACTGGCCCATGATCCAAATCGTATCCAGACATTGACCGCACG
CGCACCATAGGACTCGAAATTGCGGCCCACGGCTCATTGCAACGGTATGA
TGCATTGTGGTATAAAGCTTACTTAGGCTGGCGCGCCATAACTCTTCAAG
GAAATATCTTCACTATAAAATAAAAGTAGTTCTGAAATCCCTGAAGCATC
CTGAAGATGCTACAATAGCCGGATTTTCGGGTTTCGGGTTTCCTCTGGTT
TCCGGGTCCCGATTTCGGTTTCCGGGCCATTTCGGGCCCGGGTCCGCGGC
CATATTTCACCCGCGCGCTATCTCGCGGCGAACAACTCGGATCCAAAAAT
AAAAGATACTTTTTTATAGGCGTTTCGCGTGCAGATTTTAAAAATGAAAT
TTTCAAACTTAAATTTTTATTTTCGGAGCGGGTTTGGGCGGGTTTTGGGC
GGATTTTGGTATCCGCCCGACCCAAGGGTGGCCCGTAGCGCGAGGCGAAC
ATCTGTATTTTCATTGCCGTTTTTCGCAAGGAATCCATTTTGTTTTTTTG
AAAATTGAAAATTTCGGCCCAAATCCGAGATACGGGCGACCCTTGGGCGG
GCGGATAACTGCTATAGAAATATGTCATCAGTTTTTGGATTCGAGTTGTT
CAGTTGGAGATAGCGCGCGGATGAAATATGGCCCGAAACCCGGTTTCGGG
CCATATTGACTCTGCGCGCTATCTCCAACCGAACAACTCGAATCCAAAAA
CTGATGACACATTTCTATAGCAGTTTTTCATGAAGAATCCAAAAAAAAAT
ACTAGACACGTAAATTTTTATTTTCGAAGCGGGTTTTGGTATCCGCTCCT
ACCAAAGGTGGCCCGTATCTCGGATGCGGGACAAAATTTACACTTCTCAT
ATTTTTTTTGGAATCTTTGCAAAAAATTAGTCAGTGCAACTTGTGCTTAT
TTTTTCGATCCGAGTTGTTCTGTCGGCGCTACGGCCGTTCGCGGCCTATA
TAAAGATTATGGTACAATGCATAATAGTTTCTCCTCCTCTAACTACTCGA
CCACTCAGGCTTGGATGATGATGATGATGATTTTATTATGGTCTAGCCTT
TTGGACAACTATACAAGGACCGAAGGCCCGGCCTCCATACACGGACTCTT
TATAAACACACTTGCGTGCAATTTTTTTTTTTTTTTTTTTAATAACCAAT
CATTGTTGGCTGGATACTGAATCAATTCCTCCAGTTTTTGGTGTTCCAGC
ATAGCTGTGAAATTTTGTGGCTCTTTTAAAGTTTCTGAGACATGTAGTAC
AAGAAAACAAGCAAACAAAAATGTGGCTTGGTAATTATGAGTTTATGATA
AATATATATTTTATTATTTTCTTACTTGAAACAATGATATTTTTAATGAA
TTTAATAGTGTAAGTGCTGTGCACCAAGAATAGGAGCTGCAACAAAATAT
ACTAAATGACATACCTCTACATAGATTTTGGTGTTGATCTCTGACAAGAC
TGTAGCTTGGGACAATTTTAGTCTAGTTGGGACAATTTAAGTCTTGACGG
AACGAAACAATCTGGCACTAGTTCATGGTCCTCCATATCATCATAAGAAA
GAGTTCAAAGTTTTATTGATTAGAACAAAGCTATAGAAAATACTACTACT
CTAGATTCCCACTCTATGACAGCGATGCCTGCATTTCGGGGACTCCACCC
CCAGTGGCTCTACCTCAAGCCGCCACCTTTCATCAGGCTGTCTGCGAGTG
TTGTATGGGAATGATGGATCACGGAGCCCTATCAGCAGCATCCTCCTCCT
GCACAACAACAAAAGCTAGAAGTAGTAATGAGTACTTGCTGTTCTTGTTG
TCACCATAACAGAAGAAATATAACTGCCAAACAGTTACAAATGACCAAAT
CAAAATGGCCCTGCTTGAATTTTAGCAAATCAAACACTGTTGCCCCAAAA
GTTGTAGATATCCAAACTGCTGTGCTCGAAAACTTCTTCTTCAACCGTCC
AACAATGGTCTTGTGAAAAAACATGTAAACTATCTCTTCGAAATTCAGAT
CGCCTCTTAGCTTTTTGTCCCCCAATTGGCATTTTTTTTTTTCTTCTTCA
TCGCTGTATAGAGAGCGTGTGTTGGGCGGGCTTGGGGATACCACCGTAGT
GTAGGTGCCATTTTGTCACTGGGGACTCGCATCGTTACCTCAACTCCATA
GATGGCAGAGGAGGCGTATAGGCCCAAATACGAAACCTGGAATGGTGTCG
AAGCTCGGGAAAGTGTTGGAGATCGGGCTGGTTGTCGGCCGCTGAGTTTC
ATTGATTTTGGTGTTGATCTCTGACAAGACTGTAGTATTAATCATTGTTC
TACTTGATTCCCAGCAAAATATATAGGAAAGCTAAGACACGCAGCAAAAT
AATAATGATATATAAGCAACCTACAACCTACACTGCCAAGATCGCCGCTC
AACACGTGGAGGAGGTTGCGTGCAGGTTATATGGGGCGGCTGGGCCGAGC
GGAGTACCAGCTGTTGAATTCTCGCTATGGTTGTTGAATTACGGCAATGC
CTCTGCTAAGATTCGAGAGTCTTATGCTGCCTCAATCAACCGGATGGCCA
ATGAAGCTGTCCCTTGGGATGATCTTCGTGCTTTTTTGTCTGGCAGAGGC
TTGGGCCTTAATAAATTGCCTGGTCTTCGTCCTCTCACTATTGGCAACAT
CAACTTTTGTCTTTCTACCAAGGTCCTTCGGTTGGTTTGTGGGGAGGATG
TTTGAGGTCTTGCTTGGCTCAGATAACCTTTGTGGTGGCCTTAAGGCTGG
CCTGGAAGGAGGCTTTCATGCCATCTTGGAGAAATTCAACTCAGATCCGG
AGGTTGAAGGCATCTTGCTGCTTGATGCAGCAAATGCTGTCAACAACCTG
AATCGTGATCAGGCCTTGGCTGAGATCAGGAAGTTATGGCCCAGTGGTGC
AAGGTTTGCCTTCAGCGCCTATACAAAGGACACAAAGGGATCTTTGTGTC
TGGAGAGGAGGTGCACAGCAAGACTGGCTCCACTCAAGGTTGTGGCATTG
CCGCCATGCAGATGCATGCTGTGGGATCCTTGCCTATGGTCGTTAAGGTG
AAGGAGGATGCCCCAGACATCATCCAGGTTCTCTTTGCGGATGATAATGC
TGGTGGTGGCAAGATCAAGCGCCTTAGGTGTGGGTAGAAAAGATGATTGA
GCTTGGCCCCCCACGCGGCATCTGTAATGAGTTCACCAAGAGCTTGCTGG
TTGTCAAGCCGGAGTTCGTAGGCCAGGCCAAGGAGTTATTTGCAGACATG
CAGAATCCGGTTGTCAGCTCTGGCAAGTATCTGGGTGGCTGTGTTGGGGA
CGAAGACGAGATGCTTGATTTTGTGAAGAAGAAGGTGGCCCGCTGGGTGA
AGAACGTCGAATTCCTGGCGGAAGCGGCGAGGAAGTATCCCCACGAGGCG
TAAACTTCCTTCACTAAGTCTTTGCAGAGTGAATGGCGGTTTCTGCAGTG
CCTGATTCTTGGCTCGTCTCCTTGCTTCAAGGAGCTGGACGACGTCATTG
CGCGCGTGTTCATTCCAGCGCTGGTAGGGAGGCGGGTGTCCGACCTTGAG
AAGCGCTTGTTTGCGCTTCCTACCAGGTTTGCTGGCTTGGGTATTGGAGT
CCCCTCCAAGCAGGCCCAACCCACCTATGATTTGTCTGTTGCTGCTACTT
CGATGGTGAGAGTCCAGGAGGGTCGGCGGCTAGATGTCCCTGGCCATCGT
GCTTTCTTTGGCGTGAAGTAGCGGGAGCATCGGGCGGCAGCGGAGGCGGA
GCATAAGGCGGAACTGGAGGCAGTGCTGCTGGAGTTTGAGCCTGATAGGC
GGATGAGGATCCGGGCTCACATTGACTCCAAAAAGACGGGCTCAGTGCGC
TGCTGCCTTTAGCGAATCGGCTGGCGCTCCAGGTTGGGTGGTAGCTGATG
GGGTTGCCTGCCAAATGCGATGGCTGTGGAGAACCTTTTACCACGGACCA
CGCCCTATGCTGCTTGCATGGGAGTAACGTGAAGATTGGTCATGATCAGC
TTCGCGACGCCATGGTTGACGTATGCATGAAGGCGTATGGCAACTGCATT
TGGGAGCCAGTGGTGAGGGTGGCGTCTCAGCGGGCCAGCAATGGGGAGAA
CAATGACCTTATTGCGGACTTTGAAACTAGGGGTGTGTGGGAGCGTAGCC
AGGATTGCCTTTTCGATACCTGCATTACTCCTGGTCGTGCTTCTCGCGGC
ATCTCTTACAGCAGTGTCCTCAACAGCCAGGTGCGACTGAAGGTCAATAA
GTACAAGGTGGCCGCAGAGGAACGGCGGGCTACCCTCTTCCCCCTCCTCA
TCATCACTGTTGATGGAGTTGCCCATGCTTCCTTCCAGGCTTTCTTGAAG
CGTGTCTGCGCAGCTCTCGGCCAAGTGGCGCCGGCCTTTGTCTTATGTGA
CTAACTGGGTGCGGGTGCGGGTGCAGATATCCCTGATTAGGGCTGTGGAC
TTGCGTCTCTGGGGCTCAAGGCTGAAGTGGACAAGCTCTGGTTTTGAGGA
TGGCACGGGGCTGCCTTTCCTCAGGAAGTAGTAAGCGGGGAGCTGTGGCT
GGAGGTTGATCATGATCTATTTTTTTTGCTGTGTGTGTCTTAGTTTGCTC
GTGTTTTGGTGGAGTATGATGGATACGTTATTTGCCATGTTGGTTGCAGC
TCTGCTTGTTGTTGGTGCACAATTCTGGTATATTATTATTGTTTAACTTA
CTTGTATACTGAAACCATAATAATTATTGCCTGCTGCTGCTGCTGTTCTT
TCTTTTCTTTCTTCCACGTCATTTGATGCCATAATATCATCAACAATGAC
AGGGAGTGCAATATGCAATGCTTTGCAGCCTGTGCTCGCATTTTGAAGAC
ATTGACCGATCTGCTTTGAACAGTATATAGCACACATGTACATATTTCCA
TAAATAATGTTGATTGATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig879:198208..204526-

>mRNA_H-akashiwo_Contig879.3.1 ID=mRNA_H-akashiwo_Contig879.3.1|Name=mRNA_H-akashiwo_Contig879.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=135bp|location=Sequence derived from alignment at H-akashiwo_Contig879:198208..204526- (Heterosigma akashiwo CCMP452)
ATGCTGAGGCAGTGTACAAAGTGCGAGACAGCGAAGAAATGCGCAGGACC
TGGCTTTCAAGTGAACCGGGAGTGCAATATGCAATGCTTTGCAGCCTGTG
CTCGCATTTTGAAGACATTGACCGATCTGCTTTGA
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