mRNA_H-akashiwo_Contig879.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig879.2.1
Unique NamemRNA_H-akashiwo_Contig879.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: A0A7S3XXV3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXV3_HETAK)

HSP 1 Score: 237 bits (605), Expect = 1.220e-75
Identity = 134/207 (64.73%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKA-VAFSDSDWASDLDDRKSTTGYCIFIGL------------SALSTT-------------------------------------------------SKKCKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP 435
            PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRR       +A VAFSDSDWASDLDDRKSTTGYCIFIGL            +ALS+T                                                 SKKCKFIEIKFHFIRDCI KGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP
Sbjct:  136 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRGGVTDMSRALVAFSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTIFVDNLSAQFIAEGATSKKCKFIEIKFHFIRDCIAKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP 342          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: A0A7S4D8N3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8N3_HETAK)

HSP 1 Score: 237 bits (605), Expect = 9.210e-71
Identity = 134/207 (64.73%), Postives = 137/207 (66.18%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKA-VAFSDSDWASDLDDRKSTTGYCIFIGL------------SALSTT-------------------------------------------------SKKCKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP 435
            PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRR       +A VAFSDSDWASDLDDRKSTTGYCIFIGL            +ALS+T                                                 SKKCKFIEIKFHFIRDCI KGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP
Sbjct:  684 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRGGVTDMSRALVAFSDSDWASDLDDRKSTTGYCIFIGLCLVAWKALKQDLTALSSTKAEYVALAFTCQVILFFRDLLKEIGFEQSGPTTIFVDNLSAQFIAEGATSKKCKFIEIKFHFIRDCIAKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP 890          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: A0A7S4D6I2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6I2_HETAK)

HSP 1 Score: 132 bits (331), Expect = 2.080e-33
Identity = 82/195 (42.05%), Postives = 101/195 (51.79%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKA-VAFSDSDWASDLDDRKSTTGYCIFIGLS------------ALSTT------------------------------------------------SKKCKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQ 402
            PDLS AV RLARY  +P   HM  AK TLRY++GT D GL+Y+R       K  VAFSDSDWA+D DDRKSTTG  +F+GL             ALST                                                 +K  KFI++++HFIRD I +G V+V+HI +E N++DLFTKPL SPRFQ
Sbjct:  312 PDLSQAVLRLARYASDPTDDHMKAAKHTLRYVRGTVDRGLVYKRGGLKDIRKGLVAFSDSDWAADPDDRKSTTGMALFLGLCLIMWKSLKQPLVALSTAESEYIALAYTIKHVLLQRLQLCHVGYEQQGPTPVFVDNISAMHIAEGATKSSKFIDLRWHFIRDAIARGEVKVVHIDTEHNISDLFTKPLESPRFQ 506          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: UPI0003513231 (uncharacterized protein LOC106804217 n=1 Tax=Setaria italica TaxID=4555 RepID=UPI0003513231)

HSP 1 Score: 120 bits (300), Expect = 5.610e-31
Identity = 61/142 (42.96%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKKCKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGV 426
            PDL+ +VG ++R+M    A H A  KR LRY+ GT ++G  Y+R       + V +S+SD A D+D RKSTTG   F+G + ++  S+K K I+ ++H+IR+CI +G V+V +I + E LAD+ TKPLG  +F E+ + +GV
Sbjct:   90 PDLAFSVGYVSRFMSAATAEHQAAMKRVLRYVAGTINYGCCYKRRTGDV--ELVGYSNSDLAGDIDTRKSTTGVFFFLGDNVITWQSQKQKHIDTRYHYIRECIEEGKVKVKYIGTNEQLADILTKPLGCVKFTELRSRIGV 229          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: A0A6L2JBG9_TANCI (Uncharacterized protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2JBG9_TANCI)

HSP 1 Score: 115 bits (288), Expect = 4.790e-27
Identity = 56/145 (38.62%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKKC---KFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGV 426
            PD+S AVG ++R+M  P  +H+   K  LRY+KGT D+GL+Y +       K + ++DSD+A+D++DR+ST G   ++  + ++         K I+I+FHFIR+C+ KG + + H+  +E  ADL TKPL   + +E+  L+GV
Sbjct: 1134 PDISLAVGIVSRFMKRPTVKHLQAVKTILRYVKGTLDYGLVYTKGEKKV--KIIGYTDSDFANDVNDRRSTAGMAFYVNGNLVTWACSSVFMSKHIDIRFHFIRECVKKGEITMTHVCGKEQKADLLTKPLARVKHEEMHDLIGV 1276          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: UPI000900DA30 (uncharacterized protein LOC109184452 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000900DA30)

HSP 1 Score: 109 bits (272), Expect = 5.220e-27
Identity = 63/164 (38.41%), Postives = 90/164 (54.88%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKK----------------------CKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGV 426
            PDL+ +V RL ++M  P   H  + KR LRY+KGTT +GL   +  + T     AFSDSDWA    DRKST+GY +F+G + +S  S+K                       K ++I +HF+RD +  G + V  +S+++ LAD+FTKPL  PRF  +   L V
Sbjct:   45 PDLAYSVNRLCQFMHTPTVDHWGLLKRVLRYIKGTTTYGL---QLSASTSSDIHAFSDSDWAGCPVDRKSTSGYAVFLGSNLISWLSRKQRTVARSSTEAEYKALADDLLKTKHVDIDYHFVRDKVASGDMVVNFVSTKDQLADIFTKPLPGPRFTALRDKLNV 205          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: A0A5A7TUJ9_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TUJ9_CUCME)

HSP 1 Score: 112 bits (280), Expect = 6.350e-27
Identity = 64/171 (37.43%), Postives = 92/171 (53.80%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKK-----------------------------CKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGV 426
            PD+  AV  ++RYM  P   H+ +AKR  RYL+GT+++GL Y+++   +    V  +DSD+A DL DRKST GY   +  +A+S  SKK                              K I++KFHFIRD    G+V + +  SE+ + D+ TKPL  P FQ++  LLGV
Sbjct:  184 PDIMHAVSIISRYMEFPTVMHLLVAKRIFRYLQGTSEYGLFYKKSEKSSL---VGLTDSDYAGDLGDRKSTFGYVFMMNSTAISWCSKKQSIVTLSTTEAEFVVATVCTCQNPVLHGRSKHIDVKFHFIRDLTRDGVVELYYCKSEDQIVDIMTKPLKLPAFQKLWKLLGV 351          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: UPI000901EB2D (uncharacterized protein LOC109175111 n=1 Tax=Ipomoea nil TaxID=35883 RepID=UPI000901EB2D)

HSP 1 Score: 111 bits (278), Expect = 2.090e-26
Identity = 65/166 (39.16%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKK--------------------CKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVT-CP 435
            PDL+ +V RL ++M  P   + A  KR LRY++GT   GL   R    + P   AFSDSDWA    DRKST GY +F+G + +S TS+K                     + +E+ +HF+RD +  G ++V  +S+ + LAD+FTKPL S RF ++   LGV  CP
Sbjct:  232 PDLAFSVNRLCQFMHTPTQDNWASLKRVLRYVQGTQSLGL---RLTQSSSPVVHAFSDSDWAGCSLDRKSTAGYAVFLGPNLVSWTSRKQRTVARSSTEAEYKALANVAAEHVEVDYHFVRDKVSTGALKVNFVSTNDQLADIFTKPLSSARFGDLRCKLGVVPCP 394          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: UPI00087088E7 (uncharacterized protein LOC108868657 n=1 Tax=Pyrus x bretschneideri TaxID=225117 RepID=UPI00087088E7)

HSP 1 Score: 107 bits (268), Expect = 3.240e-26
Identity = 59/166 (35.54%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVA-FSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKK-----CK------------------FIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGV 426
            PDL+ AV ++ ++M  P  +H+  AKR LR+LKG+  HGL + +      P A++ +SD+DWA    DR+ST+GYC+F+G + +S ++KK     C                    +EI +H+IR+ ++  L++V ++ SE+ LADL TK L   RF  +C+ L +
Sbjct:   44 PDLAFAVNQICQFMHAPREQHLQAAKRVLRFLKGSISHGLWFTKG-----PIALSSYSDADWAGCTFDRRSTSGYCVFLGSNLISWSAKKQSTVACSSTEAEYRSLAHTAAELTWHVEIDYHYIRELVLANLIKVQYVCSEDQLADLHTKSLSKSRFSFLCSKLPI 204          
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Match: UPI001CC43C73 (secreted RxLR effector protein 161 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC43C73)

HSP 1 Score: 107 bits (266), Expect = 4.430e-26
Identity = 63/169 (37.28%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTCPKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKK---------------------------CKFIEIKFHFIRDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGV 426
            PDL+ +VG ++RYM  P   HM   K+ LRY+KGT   G+ Y++  +    + V +SDSD A D +DRKSTTG   F+G S ++  S+K                            K I I+FHFIR+C+  G V++ +  +E  LAD+ TKPL   RF E+   +GV
Sbjct:   46 PDLTYSVGIVSRYMETPTVSHMNAVKQILRYVKGTVGMGIEYKK--NQNSVELVGYSDSDLAGDTEDRKSTTGILFFLGESPITWVSQKQRVVALSSCEAEYIAATGAKNPVYHERSKHINIRFHFIRECVQNGSVQLEYTKTEVQLADVLTKPLARQRFFELRDKIGV 212          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig879.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XXV3_HETAK1.220e-7564.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D8N3_HETAK9.210e-7164.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4D6I2_HETAK2.080e-3342.05Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI00035132315.610e-3142.96uncharacterized protein LOC106804217 n=1 Tax=Setar... [more]
A0A6L2JBG9_TANCI4.790e-2738.62Uncharacterized protein n=1 Tax=Tanacetum cinerari... [more]
UPI000900DA305.220e-2738.41uncharacterized protein LOC109184452 n=1 Tax=Ipomo... [more]
A0A5A7TUJ9_CUCME6.350e-2737.43Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]
UPI000901EB2D2.090e-2639.16uncharacterized protein LOC109175111 n=1 Tax=Ipomo... [more]
UPI00087088E73.240e-2635.54uncharacterized protein LOC108868657 n=1 Tax=Pyrus... [more]
UPI001CC43C734.430e-2637.28secreted RxLR effector protein 161 n=1 Tax=Manihot... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig879contigH-akashiwo_Contig879:140949..141569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo138918
Model size438
Max annot lvl67593.Physo138918|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.5e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHRW@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size438
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388021.608776-CDS-H-akashiwo_Contig879:140948..1411871681388021.608776-CDS-H-akashiwo_Contig879:140948..141187Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig879 140949..141187 +
1681388021.6209242-CDS-H-akashiwo_Contig879:141311..1413251681388021.6209242-CDS-H-akashiwo_Contig879:141311..141325Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig879 141312..141325 +
1681388021.6410713-CDS-H-akashiwo_Contig879:141384..1415691681388021.6410713-CDS-H-akashiwo_Contig879:141384..141569Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig879 141385..141569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig879.2.1prot_H-akashiwo_Contig879.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig879 140949..141569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig879.2.1

>prot_H-akashiwo_Contig879.2.1 ID=prot_H-akashiwo_Contig879.2.1|Name=mRNA_H-akashiwo_Contig879.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=146bp
PDLSPAVGRLARYMVNPGARHMAMAKRTLRYLKGTTDHGLLYRRAVSLTC
PKAVAFSDSDWASDLDDRKSTTGYCIFIGLSALSTTSKKCKFIEIKFHFI
RDCIVKGLVRVIHISSEENLADLFTKPLGSPRFQEICALLGVTCP*
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mRNA from alignment at H-akashiwo_Contig879:140949..141569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig879.2.1 ID=mRNA_H-akashiwo_Contig879.2.1|Name=mRNA_H-akashiwo_Contig879.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=621bp|location=Sequence derived from alignment at H-akashiwo_Contig879:140949..141569+ (Heterosigma akashiwo CCMP452)
CCGGATCTCAGCCCTGCTGTGGGCCGCCTGGCGCGCTACATGGTGAATCC TGGAGCACGCCACATGGCTATGGCCAAGCGCACCTTGCGCTACCTCAAAG GCACTACTGATCATGGCCTTCTCTACCGCCGGGCGGTGTCACTGACATGT CCCAAGGCCGTTGCTTTCAGCGACAGTGACTGGGCATCCGATTTGGATGA CCGTAAGTCCACCACTGGGTACTGCATCTTCATTGGTCTGTGCCTGGTTG CCTGGAAGGCGCTCAACAGGACTTGACTGCCCTGTCTTCTACAAAGGCGG AGATACGTTGCCCTTGCCTTCACCTGCCAGGTGATCCTCTTCTTCAGAGA TCTGTTGAAGGAGATCGGCTTTGAGCAGTCTGGACCAACCACCATCTTCG TGGATAACCTGTCTGCCCAATTCATCGCGGAAGGAGCTACCAGCAAGAAG TGCAAGTTTATCGAGATTAAGTTCCACTTCATCCGTGACTGCATCGTCAA GGGCCTTGTCAGGGTGATCCACATTTCCAGTGAGGAGAACCTTGCGGACC TTTTCACCAAGCCTCTTGGGAGCCCCCGCTTCCAGGAAATTTGTGCCTTA CTTGGTGTGACCTGCCCTTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig879:140949..141569+

>mRNA_H-akashiwo_Contig879.2.1 ID=mRNA_H-akashiwo_Contig879.2.1|Name=mRNA_H-akashiwo_Contig879.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=438bp|location=Sequence derived from alignment at H-akashiwo_Contig879:140949..141569+ (Heterosigma akashiwo CCMP452)
CCGGATCTCAGCCCTGCTGTGGGCCGCCTGGCGCGCTACATGGTGAATCC
TGGAGCACGCCACATGGCTATGGCCAAGCGCACCTTGCGCTACCTCAAAG
GCACTACTGATCATGGCCTTCTCTACCGCCGGGCGGTGTCACTGACATGT
CCCAAGGCCGTTGCTTTCAGCGACAGTGACTGGGCATCCGATTTGGATGA
CCGTAAGTCCACCACTGGGTACTGCATCTTCATTGGTCTATCGGCTTTGA
GCACTACCAGCAAGAAGTGCAAGTTTATCGAGATTAAGTTCCACTTCATC
CGTGACTGCATCGTCAAGGGCCTTGTCAGGGTGATCCACATTTCCAGTGA
GGAGAACCTTGCGGACCTTTTCACCAAGCCTCTTGGGAGCCCCCGCTTCC
AGGAAATTTGTGCCTTACTTGGTGTGACCTGCCCTTAG
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