mRNA_H-akashiwo_Contig877.11.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig877.11.1
Unique NamemRNA_H-akashiwo_Contig877.11.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A835YPU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 359 bits (921), Expect = 8.010e-118
Identity = 167/209 (79.90%), Postives = 192/209 (91.87%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMFA 633
            MS AIEQRNQDATCYCGNLDE  T++L+WELM+QAGPVVNVHMPKDKV+  HQGYGFVEFRSEEDA+Y IKI+NM+KL+GKP+RVNKAS DRK  DVGANLFIG L+ EVDEKLLYDTFSAFGFIT TPK+MRDP+TG SKG+GFVSYD FEA+DLAIECM+ Q+LCNRQIVVQ+A+K+D+ GERHGS AERLLAANNP+R++P+TMFA
Sbjct:    1 MSAAIEQRNQDATCYCGNLDEAATEELLWELMIQAGPVVNVHMPKDKVTNTHQGYGFVEFRSEEDAEYAIKILNMVKLFGKPLRVNKASSDRKAQDVGANLFIGQLDPEVDEKLLYDTFSAFGFITNTPKVMRDPETGASKGYGFVSYDGFEASDLAIECMNGQFLCNRQIVVQYAFKRDSHGERHGSLAERLLAANNPLRLKPHTMFA 209          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A7S2SH37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SH37_9STRA)

HSP 1 Score: 351 bits (900), Expect = 3.740e-117
Identity = 174/229 (75.98%), Postives = 199/229 (86.90%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPM--RMRPNTMFAENRDAPPMPPMPGHGPPP 687
            MS AIEQRNQDATCYCGNLD+ V ++L+WELMLQAGPVV++HMPKDKV+  HQG+GFVEFRSEEDADY IKIMNM+KL+ KP+RVNKASQDRKT+DVGANLFIGNL+ +VDEKLLYDTFSAFG +T  PK+MRDPDTG SKGFGFVSYDSFEAADLAIECM+ Q+L NR I VQFA+K+D++GERHGSQAER+LAANNP+  RM P+TMFA     PP  P  G G PP
Sbjct:    1 MSAAIEQRNQDATCYCGNLDDQVEEELLWELMLQAGPVVSLHMPKDKVTNSHQGFGFVEFRSEEDADYAIKIMNMVKLFDKPIRVNKASQDRKTMDVGANLFIGNLDAQVDEKLLYDTFSAFGGLTDQPKVMRDPDTGLSKGFGFVSYDSFEAADLAIECMNGQFLSNRAIQVQFAFKRDSQGERHGSQAERMLAANNPLARRMAPHTMFAAG---PPGMPSGGMGGPP 226          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: F0YAQ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN)

HSP 1 Score: 350 bits (898), Expect = 1.040e-115
Identity = 159/204 (77.94%), Postives = 189/204 (92.65%), Query Frame = 1
Query:   19 IEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMF 630
            +EQRNQDATCY GNLDE +T++L+WE+MLQAGP+ NVH+P+DKV+G HQGYGFVEFRSEEDADY +K+MNM+KL+GKP+RVNKASQD+KTL+VGANLF+G L+ +VDEKLLYDTFSAFG IT TPKIMRDPDTGNSKGFGFVSYDSFEA+DLAIECMHNQ+LCN+Q+ V +A+K+D+K ERHGSQAERLLAANNPM  +P+ MF
Sbjct:    6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPIGNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDKKTLEVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSAKPHAMF 209          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A6H5KI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 348 bits (892), Expect = 3.710e-114
Identity = 161/209 (77.03%), Postives = 187/209 (89.47%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMFA 633
            MS +IEQRNQDATCY GNLD  VT+ L+WELM+QAGPV NVHMPKDK++G HQG+GFVEFRSE+DA+Y IKIMNM+KL+GKP+RVNKASQDRK  DVGANLFIG L+ +VDEK+LYDTFSAFGFIT TPK+MRDPDTG SKG+GFVSYD FEA+D AIECMHNQYLCNRQI VQ+AYKKD +GERHG QAERLLA+NNP + + +T+F+
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFS 209          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: D8LT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 348 bits (892), Expect = 2.410e-112
Identity = 161/209 (77.03%), Postives = 187/209 (89.47%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMFA 633
            MS +IEQRNQDATCY GNLD  VT+ L+WELM+QAGPV NVHMPKDK++G HQG+GFVEFRSE+DA+Y IKIMNM+KL+GKP+RVNKASQDRK  DVGANLFIG L+ +VDEK+LYDTFSAFGFIT TPK+MRDPDTG SKG+GFVSYD FEA+D AIECMHNQYLCNRQI VQ+AYKKD +GERHG QAERLLA+NNP + + +T+F+
Sbjct:    1 MSASIEQRNQDATCYTGNLDSSVTEALLWELMIQAGPVANVHMPKDKITGVHQGFGFVEFRSEDDAEYAIKIMNMVKLFGKPLRVNKASQDRKANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFS 209          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A7S3ZVH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZVH1_9STRA)

HSP 1 Score: 339 bits (870), Expect = 2.610e-112
Identity = 155/211 (73.46%), Postives = 189/211 (89.57%), Query Frame = 1
Query:   19 IEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMR-MRPNTMFAENRDA 648
            +EQRNQDATCY GNLDE +T++L+WE+MLQAGPV NVH+P+DKV+G HQGYGFVEFRSEEDADY +K+MNM+KL+GKP+RVNKASQDR+ ++VGANLF+G L+G+VDEKLLYDTFSAFG I+ TPK+MRDPDTG SKG+GFVSYDSFEA+DLAIECMH Q+LCN+Q+ V +A+K+D+K ERHGSQAERLLAANNP   ++P+TMF     A
Sbjct:    6 VEQRNQDATCYVGNLDEQLTEELLWEMMLQAGPVSNVHLPRDKVTGSHQGYGFVEFRSEEDADYALKVMNMVKLFGKPLRVNKASQDRRAVEVGANLFVGGLDGDVDEKLLYDTFSAFGTISETPKVMRDPDTGGSKGYGFVSYDSFEASDLAIECMHGQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPNNAVQPHTMFGTGAPA 216          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A0W8D7L6_PHYNI (Splicing factor 3B subunit 4 n=11 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8D7L6_PHYNI)

HSP 1 Score: 335 bits (858), Expect = 7.760e-111
Identity = 164/225 (72.89%), Postives = 189/225 (84.00%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMFA------ENRDAPPMPP 663
            MS AIEQRNQDAT Y GNLD+ VT++L+WELMLQAG V NVHMP+DKV+G HQ YGFVEFR+EE A+Y +K++NMI+LYG+ +RV KAS DRK LDVGANLFIGNL+ EVDEKLLYDTFSAFG I  TPKIMRDPDT  SKGFGFVS+DSFEAADLAIECMH QYLCNRQ+VVQ+A+KKD+  ERHGS+AERLLA  NP +++P+TMFA         DAPP PP
Sbjct:    1 MSAAIEQRNQDATVYVGNLDDRVTEELLWELMLQAGSVCNVHMPRDKVTGAHQNYGFVEFRTEECAEYAVKVLNMIQLYGRVIRVKKASNDRKNLDVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDTKASKGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQRNPNKLKPHTMFAFTAGAAPGMDAPPPPP 225          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A484EDR7_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EDR7_BRELC)

HSP 1 Score: 333 bits (855), Expect = 1.930e-110
Identity = 164/228 (71.93%), Postives = 192/228 (84.21%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMFAENRDAPPMPPMPGHGPPPP 690
            MS  IEQRNQDAT Y GNLD+ VT++L+WELMLQAG V NVHMP+DKVSG HQ YGFVEFR+EE A+Y +K++NMI+LYG+ +RV KAS DRK+LDVGANLFIGNL+ EVDEKLLYDTFSAFG I  TPKIMRDPD+  SKGFGF+S+DSFEAADLAIECMH QYLCNRQ+VVQ+A+KKD+  ERHGS+AERLLA  NP +++P+TMFA    APP   +P   PPPP
Sbjct:    1 MSAGIEQRNQDATVYVGNLDDRVTEELLWELMLQAGSVCNVHMPRDKVSGAHQNYGFVEFRAEECAEYAVKVLNMIQLYGRVIRVKKASNDRKSLDVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDSKASKGFGFISFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQTNPNKLKPHTMFAFTTGAPPGMEVP---PPPP 225          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A3F2RG69_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RG69_9STRA)

HSP 1 Score: 333 bits (854), Expect = 3.850e-110
Identity = 160/223 (71.75%), Postives = 194/223 (87.00%), Query Frame = 1
Query:    7 MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPMRMRPNTMFA-ENRDAPPMPPMPG 672
            MS AIEQRNQDAT Y GNLD+ V+++L+WELMLQAG V NVHMP+DKV+G HQ YGFVEFR+EE ++Y +K++NMI+L+GK +RV KASQD+K LDVGANLF+GNL+ EVDEKLLYDTFSAFG I  TPK+MRDPDT  S+GFGFVS+DSFEAADLAIECM+ QYLCNRQ+VVQ+AYKKD++ ERHGS+AERLLA  NP +++P+T+FA  N+ APP PPM G
Sbjct:    1 MSAAIEQRNQDATVYVGNLDDRVSEELLWELMLQAGSVCNVHMPRDKVTGSHQNYGFVEFRTEECSEYAVKVLNMIQLFGKVIRVKKASQDKKNLDVGANLFLGNLDPEVDEKLLYDTFSAFGGIIETPKVMRDPDTKLSRGFGFVSFDSFEAADLAIECMNGQYLCNRQVVVQYAYKKDSQNERHGSEAERLLAQRNPNKLKPHTLFAFTNQGAPPPPPMGG 223          
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Match: A0A2H5NRF6_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NRF6_CITUN)

HSP 1 Score: 332 bits (852), Expect = 1.250e-109
Identity = 166/238 (69.75%), Postives = 197/238 (82.77%), Query Frame = 1
Query:    1 NIMSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSGHHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGANLFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDSFEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNP--MRMRPNTMFAEN----RDAPPMPPMPGHGPPPPRP 696
            N++     +RNQDAT Y GNLD  VT++L+WEL +QAGPVVNV++PKD+V+  HQGYGFVEFRSEEDADY IK++NMIKLYGKP+RVNKASQD+K+LDVGANLFIGNL+ +VDEKLLYDTFSAFG I T PKIMRDPDTGNS+GFGF+SYDSFEA+D AIE M+ QYLCNRQI V +AYKKD KGERHG+ AER+LAANNP   + RP+T+FA      ++AP +    G GP PPRP
Sbjct:   12 NLLGQHSAERNQDATAYVGNLDPQVTEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQVNGTVG-GPVPPRP 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig877.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YPU5_9STRA8.010e-11879.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SH37_9STRA3.740e-11775.98Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
F0YAQ8_AURAN1.040e-11577.94Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6H5KI11_9PHAE3.710e-11477.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LT41_ECTSI2.410e-11277.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3ZVH1_9STRA2.610e-11273.46Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A0W8D7L6_PHYNI7.760e-11172.89Splicing factor 3B subunit 4 n=11 Tax=Peronosporac... [more]
A0A484EDR7_BRELC1.930e-11071.93Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A3F2RG69_9STRA3.850e-11071.75Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A2H5NRF6_CITUN1.250e-10969.75Uncharacterized protein n=1 Tax=Citrus unshiu TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig877contigH-akashiwo_Contig877:259745..260953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009037519.1
Preferred nameSF3B4
PFAMsRRM_1
Model size1210
Max annot lvl2759|Eukaryota
KEGG koko:K07951,ko:K12831
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0030532,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032991,GO:0033120,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0045935,GO:0046483,GO:0048024,GO:0048026,GO:0048518,GO:0048522,GO:0050684,GO:0050685,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071004,GO:0071010,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1903311,GO:1903313,GO:1990904
Exons1
Evalue1.59e-116
EggNOG OGsKOG0131@1|root,KOG0131@2759|Eukaryota
DescriptionRNA splicing
Cds size1203
COG categoryS
BRITEko00000,ko00001,ko00002,ko03036,ko03041,ko04031,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388021.3078933-CDS-H-akashiwo_Contig877:259744..2609471681388021.3078933-CDS-H-akashiwo_Contig877:259744..260947Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig877 259745..260947 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388021.324165-UTR-H-akashiwo_Contig877:260947..2609531681388021.324165-UTR-H-akashiwo_Contig877:260947..260953Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig877 260948..260953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig877.11.1prot_H-akashiwo_Contig877.11.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig877 259745..260947 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig877.11.1

>prot_H-akashiwo_Contig877.11.1 ID=prot_H-akashiwo_Contig877.11.1|Name=mRNA_H-akashiwo_Contig877.11.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=401bp
MSIAIEQRNQDATCYCGNLDEMVTDDLMWELMLQAGPVVNVHMPKDKVSG
HHQGYGFVEFRSEEDADYCIKIMNMIKLYGKPMRVNKASQDRKTLDVGAN
LFIGNLEGEVDEKLLYDTFSAFGFITTTPKIMRDPDTGNSKGFGFVSYDS
FEAADLAIECMHNQYLCNRQIVVQFAYKKDAKGERHGSQAERLLAANNPM
RMRPNTMFAENRDAPPMPPMPGHGPPPPRPPMGLPPPPPSGMVPPPPSMP
PPPPGAVPPPQHASTKTSNRSAATATTKHAPTASGRAATSSTAAATDASG
RVRAARYATSTPQAATTRQRTAAATPTGPVWRPSSTGPVRGTTAHGDAPC
PTAHAAAAFPGASSSSGPGDGHAPTAPATRTPTAPTNARGSSTTTSSTAS
S
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mRNA from alignment at H-akashiwo_Contig877:259745..260953-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig877.11.1 ID=mRNA_H-akashiwo_Contig877.11.1|Name=mRNA_H-akashiwo_Contig877.11.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1209bp|location=Sequence derived from alignment at H-akashiwo_Contig877:259745..260953- (Heterosigma akashiwo CCMP452)
AACATCATGTCGATAGCTATTGAGCAAAGGAATCAAGATGCCACTTGCTA TTGCGGTAATCTGGACGAGATGGTGACTGATGACCTTATGTGGGAACTCA TGCTGCAGGCCGGACCGGTAGTGAATGTCCATATGCCCAAGGACAAAGTT AGTGGTCATCACCAAGGGTATGGTTTCGTCGAGTTTCGATCCGAAGAAGA TGCAGACTACTGCATAAAAATTATGAACATGATCAAGCTTTATGGCAAAC CCATGAGAGTGAACAAGGCCAGCCAAGACAGGAAAACCCTCGATGTTGGC GCAAATCTTTTCATTGGTAATCTGGAAGGAGAAGTCGATGAAAAACTTCT GTATGACACGTTTTCAGCCTTTGGTTTCATCACAACAACCCCTAAAATCA TGCGGGATCCCGACACAGGGAATTCTAAAGGCTTTGGCTTTGTTTCCTAT GATAGTTTTGAGGCGGCAGACCTTGCCATCGAATGCATGCATAACCAGTA CCTATGTAATCGACAAATTGTCGTGCAGTTTGCATATAAAAAGGATGCCA AGGGTGAAAGGCATGGGTCACAAGCAGAACGTTTGCTTGCTGCAAACAAC CCAATGAGAATGAGACCGAACACCATGTTTGCAGAGAATCGGGATGCACC ACCAATGCCTCCTATGCCTGGCCATGGACCCCCACCACCCAGACCTCCAA TGGGGCTCCCCCCTCCGCCGCCATCTGGCATGGTGCCCCCACCACCCAGC ATGCCGCCGCCGCCACCGGGGGCCGTGCCCCCGCCCCAACATGCCTCCAC CAAGACCTCCAATCGCTCCGCCGCCACGGCCACCACCAAACATGCCCCCA CAGCCTCCGGTCGGGCTGCCACCTCCTCCACGGCTGCCGCCACCGATGCC TCCGGCAGGGTTCGGGCCGCCCGGTATGCCACCAGCACCCCCCAGGCTGC CACCACCAGGCAGCGCACCGCCGCCGCCACCCCCACCGGGCCAGTTTGGA GGCCCTCCTCCACGGGGCCAGTACGGGGGACCACCGCCCATGGGGATGCC CCCTGCCCCACCGCGCATGCCGCCGCCGCCTTTCCCGGGGCCTCCTCCTC TTCCGGGCCAGGGGATGGGCATGCCCCCACGGCCCCCGCCACAAGGACCC CCACGGCCCCCACCAATGCCCGGGGCTCCTCGACTACCACCTCCTCCACC GCTTCCTCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig877:259745..260953-

>mRNA_H-akashiwo_Contig877.11.1 ID=mRNA_H-akashiwo_Contig877.11.1|Name=mRNA_H-akashiwo_Contig877.11.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1203bp|location=Sequence derived from alignment at H-akashiwo_Contig877:259745..260953- (Heterosigma akashiwo CCMP452)
ATGTCGATAGCTATTGAGCAAAGGAATCAAGATGCCACTTGCTATTGCGG
TAATCTGGACGAGATGGTGACTGATGACCTTATGTGGGAACTCATGCTGC
AGGCCGGACCGGTAGTGAATGTCCATATGCCCAAGGACAAAGTTAGTGGT
CATCACCAAGGGTATGGTTTCGTCGAGTTTCGATCCGAAGAAGATGCAGA
CTACTGCATAAAAATTATGAACATGATCAAGCTTTATGGCAAACCCATGA
GAGTGAACAAGGCCAGCCAAGACAGGAAAACCCTCGATGTTGGCGCAAAT
CTTTTCATTGGTAATCTGGAAGGAGAAGTCGATGAAAAACTTCTGTATGA
CACGTTTTCAGCCTTTGGTTTCATCACAACAACCCCTAAAATCATGCGGG
ATCCCGACACAGGGAATTCTAAAGGCTTTGGCTTTGTTTCCTATGATAGT
TTTGAGGCGGCAGACCTTGCCATCGAATGCATGCATAACCAGTACCTATG
TAATCGACAAATTGTCGTGCAGTTTGCATATAAAAAGGATGCCAAGGGTG
AAAGGCATGGGTCACAAGCAGAACGTTTGCTTGCTGCAAACAACCCAATG
AGAATGAGACCGAACACCATGTTTGCAGAGAATCGGGATGCACCACCAAT
GCCTCCTATGCCTGGCCATGGACCCCCACCACCCAGACCTCCAATGGGGC
TCCCCCCTCCGCCGCCATCTGGCATGGTGCCCCCACCACCCAGCATGCCG
CCGCCGCCACCGGGGGCCGTGCCCCCGCCCCAACATGCCTCCACCAAGAC
CTCCAATCGCTCCGCCGCCACGGCCACCACCAAACATGCCCCCACAGCCT
CCGGTCGGGCTGCCACCTCCTCCACGGCTGCCGCCACCGATGCCTCCGGC
AGGGTTCGGGCCGCCCGGTATGCCACCAGCACCCCCCAGGCTGCCACCAC
CAGGCAGCGCACCGCCGCCGCCACCCCCACCGGGCCAGTTTGGAGGCCCT
CCTCCACGGGGCCAGTACGGGGGACCACCGCCCATGGGGATGCCCCCTGC
CCCACCGCGCATGCCGCCGCCGCCTTTCCCGGGGCCTCCTCCTCTTCCGG
GCCAGGGGATGGGCATGCCCCCACGGCCCCCGCCACAAGGACCCCCACGG
CCCCCACCAATGCCCGGGGCTCCTCGACTACCACCTCCTCCACCGCTTCC
TCC
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