mRNA_H-akashiwo_Contig876.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig876.7.1
Unique NamemRNA_H-akashiwo_Contig876.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig876.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig876contigH-akashiwo_Contig876:368868..369241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388020.910985-CDS-H-akashiwo_Contig876:368868..3689701681388020.910985-CDS-H-akashiwo_Contig876:368868..368970Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig876 368869..368970 -
1681388020.9205787-CDS-H-akashiwo_Contig876:369172..3692411681388020.9205787-CDS-H-akashiwo_Contig876:369172..369241Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig876 369173..369241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig876.7.1prot_H-akashiwo_Contig876.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig876 368869..369241 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig876.7.1

>prot_H-akashiwo_Contig876.7.1 ID=prot_H-akashiwo_Contig876.7.1|Name=mRNA_H-akashiwo_Contig876.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=57bp
IVKEPLKFSLSKRAGEMTLLYNKNLDPDRWPKNPLIQGYIKIAQAFAILT
SSNWFNN
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mRNA from alignment at H-akashiwo_Contig876:368868..369241-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig876.7.1 ID=mRNA_H-akashiwo_Contig876.7.1|Name=mRNA_H-akashiwo_Contig876.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=374bp|location=Sequence derived from alignment at H-akashiwo_Contig876:368868..369241- (Heterosigma akashiwo CCMP452)
ATTGTCAAAGAACCCCTCAAGTTTAGCTTGTCCAAAAGGGCAGGAGAGAT
GACCCTCTTGTACAACAAGGTTGATGTGATTATATGATGATATATATATG
GTCTTTGGTGGTAATATAATGAGATAACTGTTCAATGAGAGGATATATAG
TGTTTTTTTTTCCCATCTGGAAGCACTATGGACTGCTTATGCTCCCAAAA
ATTAATGCATTTCATCATGGCTTTTGAAAAAAGATACATTTCGCTGACTC
ATAATGCACCCCCTCTGACAGAACTTGGACCCAGACAGGTGGCCCAAGAA
CCCACTGATCCAAGGCTACATTAAAATTGCCCAAGCATTCGCTATTCTTA
CGTCTAGCAACTGGTTCAATAACT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig876:368868..369241-

>mRNA_H-akashiwo_Contig876.7.1 ID=mRNA_H-akashiwo_Contig876.7.1|Name=mRNA_H-akashiwo_Contig876.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=171bp|location=Sequence derived from alignment at H-akashiwo_Contig876:368868..369241- (Heterosigma akashiwo CCMP452)
ATTGTCAAAGAACCCCTCAAGTTTAGCTTGTCCAAAAGGGCAGGAGAGAT
GACCCTCTTGTACAACAAGAACTTGGACCCAGACAGGTGGCCCAAGAACC
CACTGATCCAAGGCTACATTAAAATTGCCCAAGCATTCGCTATTCTTACG
TCTAGCAACTGGTTCAATAAC
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