mRNA_H-akashiwo_Contig876.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig876.6.1
Unique NamemRNA_H-akashiwo_Contig876.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig876.6.1 vs. uniprot
Match: A0A7S3USZ5_HETAK (Methenyltetrahydrofolate synthase domain-containing protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USZ5_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 1.230e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 TNLPYKASTKDLQEHFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW 141
            TNLPYKASTKDLQ+HFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW
Sbjct:  295 TNLPYKASTKDLQDHFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW 341
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig876.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3USZ5_HETAK1.230e-2297.87Methenyltetrahydrofolate synthase domain-containin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig876contigH-akashiwo_Contig876:276245..276786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388020.8504827-CDS-H-akashiwo_Contig876:276244..2763431681388020.8504827-CDS-H-akashiwo_Contig876:276244..276343Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig876 276245..276343 +
1681388020.8633876-CDS-H-akashiwo_Contig876:276625..2766701681388020.8633876-CDS-H-akashiwo_Contig876:276625..276670Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig876 276626..276670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388020.8786314-UTR-H-akashiwo_Contig876:276670..2767861681388020.8786314-UTR-H-akashiwo_Contig876:276670..276786Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig876 276671..276786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig876.6.1prot_H-akashiwo_Contig876.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig876 276245..276670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig876.6.1

>prot_H-akashiwo_Contig876.6.1 ID=prot_H-akashiwo_Contig876.6.1|Name=mRNA_H-akashiwo_Contig876.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=48bp
TNLPYKASTKDLQEHFSSAGRVEEVKLLQGKSKVNNRKSIHQAGRFW*
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mRNA from alignment at H-akashiwo_Contig876:276245..276786+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig876.6.1 ID=mRNA_H-akashiwo_Contig876.6.1|Name=mRNA_H-akashiwo_Contig876.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=542bp|location=Sequence derived from alignment at H-akashiwo_Contig876:276245..276786+ (Heterosigma akashiwo CCMP452)
ACCAACTTGCCATACAAAGCATCGACAAAAGATCTACAGGAGCATTTCAG
CTCAGCCGGAAGAGTGGAAGAAGTAAAGCTTCTTCAGGGAAAATCGAAAG
GTACGAGTTGAGTGTGTGGGGAATTTTAAGTCAAATCAAAAGGAAGTATA
ATACTTACAATGCTCCCATTTCTTTTTGTTTTTTAAGTTCCTCGTTCCTA
TTTATATGAAATTGATAATAATAATATGAGAAAAATTAAGAGTTTGTCAC
TGATATGAAAAAGAAAAGTGGGTGGTAATTGTATTTCACAGGCCGCCATA
CCTTCACACCACTCCTACATAAATAGTCATCGCTGATAATACTCACCTGA
GTGAAAATGCGATATTTGGTGCTGCTGTTTGGTCAACAATAGGAAAAGCA
TTCATCAAGCTGGTAGATTCTGGTGAAGTGGAACAATTCATATCAACTCT
AAACGGAGTAGAGTTCCAGGGAGACAGAAAGCTGTACGTTCGAAAGTTCA
AGTAAGAGAACTACACTAGAAGAGGAGCAAGGACTATTTCAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig876:276245..276786+

>mRNA_H-akashiwo_Contig876.6.1 ID=mRNA_H-akashiwo_Contig876.6.1|Name=mRNA_H-akashiwo_Contig876.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=144bp|location=Sequence derived from alignment at H-akashiwo_Contig876:276245..276786+ (Heterosigma akashiwo CCMP452)
ACCAACTTGCCATACAAAGCATCGACAAAAGATCTACAGGAGCATTTCAG
CTCAGCCGGAAGAGTGGAAGAAGTAAAGCTTCTTCAGGGAAAATCGAAAG
TCAACAATAGGAAAAGCATTCATCAAGCTGGTAGATTCTGGTGA
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