mRNA_H-akashiwo_Contig87.7.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig87.7.1
Unique NamemRNA_H-akashiwo_Contig87.7.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig87.7.1 vs. uniprot
Match: A0A7S4D724_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D724_HETAK)

HSP 1 Score: 111 bits (278), Expect = 4.690e-28
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 AIERILQRPGTYTSAGAMDVRDPDIRAAVNHVDGEPDSVFGLPLDVACDLVVKA 162
            AIERILQRPGTYTSAGAMDVRDPDIRAAVNHVDGEPDSVFGLPLDVACDLVVKA
Sbjct:  314 AIERILQRPGTYTSAGAMDVRDPDIRAAVNHVDGEPDSVFGLPLDVACDLVVKA 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig87.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D724_HETAK4.690e-28100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig87contigH-akashiwo_Contig87:479668..481510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLL5
PFAMsMaf
Model size166
Max annot lvl2759|Eukaryota
KEGG koko:K06287
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue0.000198
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota
Descriptionnucleoside-triphosphate diphosphatase activity
Cds size162
COG categoryD
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388018.4000602-CDS-H-akashiwo_Contig87:479669..4797541681388018.4000602-CDS-H-akashiwo_Contig87:479669..479754Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig87 479670..479754 -
1681388018.4114692-CDS-H-akashiwo_Contig87:481433..4815101681388018.4114692-CDS-H-akashiwo_Contig87:481433..481510Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig87 481434..481510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig87.7.1prot_H-akashiwo_Contig87.7.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig87 479670..481510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig87.7.1

>prot_H-akashiwo_Contig87.7.1 ID=prot_H-akashiwo_Contig87.7.1|Name=mRNA_H-akashiwo_Contig87.7.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
AIERILQRPGTYTSAGAMDVRDPDIRAAVNHVDGEPDSVFGLPLDVACDL
VVKA
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mRNA from alignment at H-akashiwo_Contig87:479668..481510-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig87.7.1 ID=mRNA_H-akashiwo_Contig87.7.1|Name=mRNA_H-akashiwo_Contig87.7.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1843bp|location=Sequence derived from alignment at H-akashiwo_Contig87:479668..481510- (Heterosigma akashiwo CCMP452)
GCAATTGAGCGAATTCTGCAGCGACCTGGCACGTATACAAGTGCAGGGGC
TATGGATGTTCGCGACCCTGACATCAGGTATTTATTATTAGAGAGTTTTT
TTTCGCCCTCTTTTGTTTGTCTTTCAATTCACCACATGAATGAACCATTC
TGGTGCACAAAAGACGAGTCATAGTGGGCTAAGCCATGTTTCATCAAACA
TAAGACAGACATAACACATGGTTGCTGAAAGAGTCGTGGTCAGTCGGGGT
GACGTGCTGATATGTGGGTCTGTCTGTAAAACGCAGCGTACGCACCAAAT
CTAATGTATTAAGATTTAAAACCCTTTCATGAACAACACGTGCATCTGTT
TCTTTCTAATCTTTTGCTGATCTCCTCTGCCTAGCTAACATTCCTGGACT
ATTGAAATCATAAGCTCCGTAGTTGCCGTGGCAGTGGGGCCATTGGGTGT
ATTCACTGTCTTCGAAATGAAGTTGGGCGTCATGTTATCACTCGGCAACC
CCGGTGATTAGCAAAGGCTAGACGGATCTGGTGAGCCTGCGCAAATACAG
TTGCCACGAAAGACTGCCCTTAGGGGCAGTAGACTTCACCTCCTACATGC
ACTGAATCTGGATTCAGTTCTAAGGTTCTCTTCGGTGGACTTTGATCCAA
GTTACGTTACGTATCTACTGATTGATGGCACATACCTGGTGCCCAGGATC
CGAGGCTCCCACGGACCTAATTAACCAAGTACCATGCGAGATTTCACAGA
TTCGAAGGACTAGATGGTGGCAAGGACCCAGACATTGACAAAGAGACGGC
TTCCCTATTGTGCCGCTGGTTGGGGCACACTCAAATTCTAATCCTCTTGT
GGTTGCTGGCTTTTCTGAGCTGAGGCATCTCCTGGCTGGACTGGGTTGCA
AGCAGGTTTGACCTACCCCGGTGAATAAGGATAATACTGCATTGCTGCAT
GTATACGGTATATATTATGCTGGGCAACTGAAATCACAGTAACCAGAAAG
TTCGTCACCTACACGTGAATTCCCATTATGTTTGGGAACAAGTAAAGAAG
GAAGAGATTGGTGAGGTCAAGTGTATTGACACCAAGGAGCAGATTGGTGG
TCAATTCACTAAATCACTCAGTCCTGACTCTTTTTACTTAAGTAGCACTT
TTTACATCCATAAAGGTAACTGATGGAGTTTCATTCAAACCTGTGCCATC
AACATGGTGGGGCATTTTGGTGTTGATGTTGTTCCAAGTTGTAGTATGTT
ATTAGTAGTATATTATTATCATTCATTATTTTTGTTGTAGAAGGTGATGA
TAAGAAGAAGAAGAAGAAGAGTTTTTTGTCGTATTTTTTAAAACCATTAC
CGACTGTGGAGAATGGGTTTATTTATCTTACTATGGCTGCTGGCCCAGCC
TTTGTTGGTGGTATGTTAATCTCTGTCTCACTGCTACCCTCAAAAAGTTA
TGGCTCAATGGTGAAGAAGTGCATGTATACGGATTATCATCATGGTTCAA
CAAAGGGGGTATTTTGCACTATGTACTGACATAAATGGTCAGATGTTTCT
TGGGCTTCAAAGGAATATACTCTTCAAACTTCAGTCCCAACTTTGCTCCT
AGTGCAGCTCTATGTGATGTGTATAAACCCTTTGTCCACCATTCGTGCAA
TCCTCTCTTTTTCTCTGCCCTCCCTGCTCTCTTCTTTCTGGTAATGACTG
ACCTGCATTATTACCACCTTATCTTAAAAATGTAATAATATAAATAAAAA
ATACAGGGCAGCAGTAAATCATGTGGACGGAGAGCCTGACTCGGTTTTTG
GTCTCCCACTTGACGTTGCTTGTGACTTGGTTGTCAAGGCGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig87:479668..481510-

>mRNA_H-akashiwo_Contig87.7.1 ID=mRNA_H-akashiwo_Contig87.7.1|Name=mRNA_H-akashiwo_Contig87.7.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig87:479668..481510- (Heterosigma akashiwo CCMP452)
GCAATTGAGCGAATTCTGCAGCGACCTGGCACGTATACAAGTGCAGGGGC
TATGGATGTTCGCGACCCTGACATCAGGGCAGCAGTAAATCATGTGGACG
GAGAGCCTGACTCGGTTTTTGGTCTCCCACTTGACGTTGCTTGTGACTTG
GTTGTCAAGGCG
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