mRNA_H-akashiwo_Contig865.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig865.3.1
Unique NamemRNA_H-akashiwo_Contig865.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig865.3.1 vs. uniprot
Match: A0A7S3YA15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA15_HETAK)

HSP 1 Score: 372 bits (956), Expect = 9.270e-127
Identity = 189/191 (98.95%), Postives = 189/191 (98.95%), Query Frame = 2 
Query:    2 MASLLLLIALRYASAGKLGLFSVIILLLTSTQLSSAGSEKSDRKLNRIWKRGLPYAAELHSGNYTSHVVTSPREFPIAIFFTARSPKYGCTGCPIFEQKFQEVAQSYMALPENKRRGKNEMAFVTVAIDDAMNAFQNNQFTHVPRLYVLPPMPEGARLKEPIDPLYEFDVNTFETKKFLQYLKDRHQIVIP 574
            MASLLL  ALRYASAGKLGLFSVIILLLTSTQLSSAGSEKSDRKLNRIWKRGLPYAAELHSGNYTSHVVTSPREFPIAIFFTARSPKYGCTGCPIFEQKFQEVAQSYMALPENKRRGKNEMAFVTVAIDDAMNAFQNNQFTHVPRLYVLPPMPEGARLKEPIDPLYEFDVNTFETKKFLQYLKDRHQIVIP
Sbjct:    2 MASLLL--ALRYASAGKLGLFSVIILLLTSTQLSSAGSEKSDRKLNRIWKRGLPYAAELHSGNYTSHVVTSPREFPIAIFFTARSPKYGCTGCPIFEQKFQEVAQSYMALPENKRRGKNEMAFVTVAIDDAMNAFQNNQFTHVPRLYVLPPMPEGARLKEPIDPLYEFDVNTFETKKFLQYLKDRHQIVIP 190
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BLAST of mRNA_H-akashiwo_Contig865.3.1 vs. uniprot
Match: E9GTV6_DAPPU (Uncharacterized protein n=24 Tax=Daphniidae TaxID=77658 RepID=E9GTV6_DAPPU)

HSP 1 Score: 53.5 bits (127), Expect = 4.240e-5
Identity = 38/135 (28.15%), Postives = 66/135 (48.89%), Query Frame = 2 
Query:   65 SVIILLLTSTQLSSAGSEKSDRK-LNRIWKRGLPYAAE-----LHSGNYTSHVVTSPREFPIAIFFTARSPKYGCTGCPIFEQKFQEVAQSYMALPENKRRGKNEMAFVTVAIDDAMNAFQNNQFTHVPRLYVLP 451
            ++I LLLT   +S +  +K D   LN  +++ +  +++     L++  Y   V TSPR + +A+ FTA SPK  C  C     ++  VA S+      ++   N++ F  V  D+A + FQ  +    P +   P
Sbjct:   11 ALIFLLLTIASVSESQKKKQDASGLNDRYQQIMDMSSKRTVIKLNANRYRELVRTSPRNYSVAVMFTALSPKRQCAICKHALDEYTIVANSF----RYQQMFTNQLFFALVDFDEAQDVFQQLKLNTAPVIMHFP 141
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BLAST of mRNA_H-akashiwo_Contig865.3.1 vs. uniprot
Match: A0A1E4TZU3_PACTA (Uncharacterized protein n=1 Tax=Pachysolen tannophilus NRRL Y-2460 TaxID=669874 RepID=A0A1E4TZU3_PACTA)

HSP 1 Score: 52.8 bits (125), Expect = 8.080e-5
Identity = 43/167 (25.75%), Postives = 73/167 (43.71%), Query Frame = 2 
Query:   56 GLFSVIILLLTSTQLSSAGSEKSDRKLNRIWKRGLPYAAELHSGNYTSHVVTSPREFPIAIFFTARSPKYGCTGC----PIFEQKFQEVAQSYMALPENKR-----RGKNEMAFVTVAIDDAMNAFQNNQFTHVPRLYVLPPMPEGARLKEPIDPLYE-FDVNTFET 526
            G FS+I +L     L S+    + + L++I  +      ++   NY   +    +++ IA++ TA SP+ GC  C    PI+       A++   L E +R      G +++ F      D M  F      +VP+L+     P  + LK+  D L+  FD   F T
Sbjct:    7 GQFSIIRILTILLILCSSVCAYTSKDLDKIISKSKNNIIKITDKNYNKILNNERKDYHIAVYLTASSPRVGCALCNEFQPIYTILANSFAENLKKLNEQERLELNKNGGDKIFFAIADFSDNMEFFTKLSLNNVPKLFYF--HPTNSNLKDNNDNLHNNFDEYAFTT 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig865.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S3YA15_HETAK9.270e-12798.95Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
E9GTV6_DAPPU4.240e-528.15Uncharacterized protein n=24 Tax=Daphniidae TaxID=... [more]
A0A1E4TZU3_PACTA8.080e-525.75Uncharacterized protein n=1 Tax=Pachysolen tannoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig865contigH-akashiwo_Contig865:30597..33145 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog470704.XP_007761469.1
Preferred nameOST3
PFAMsOST3_OST6
Model size575
Max annot lvl4751|Fungi
KEGG koko:K12669
KEGG TC9.A.45.1.2,9.A.45.1.4,9.A.45.1.6
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00072
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0004576,GO:0004579,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006493,GO:0006807,GO:0008150,GO:0008152,GO:0008250,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031984,GO:0032991,GO:0034645,GO:0035268,GO:0035269,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0097502,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990234
Exons5
Evalue3.25e-07
EggNOG OGsKOG2603@1|root,KOG2603@2759|Eukaryota,38DJE@33154|Opisthokonta,3NWTE@4751|Fungi,3QMD6@4890|Ascomycota,20EDA@147545|Eurotiomycetes,3MU6Z@451870|Chaetothyriomycetidae
Ec32 ortholog descriptionOligosaccharyl transferase complex, subunit OST3/OST6
Ec32 orthologEc-10_002870.1
DescriptionOST3 / OST6 family, transporter family
Cds size573
COG categoryO
BRITEko00000,ko00001,ko00002,ko02000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig865.3.1prot_H-akashiwo_Contig865.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig865 30597..33144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388017.2079666-CDS-H-akashiwo_Contig865:30596..307071681388017.2079666-CDS-H-akashiwo_Contig865:30596..30707Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig865 30597..30707 -
1681388017.221551-CDS-H-akashiwo_Contig865:32073..321411681388017.221551-CDS-H-akashiwo_Contig865:32073..32141Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig865 32074..32141 -
1681388017.232588-CDS-H-akashiwo_Contig865:32323..325361681388017.232588-CDS-H-akashiwo_Contig865:32323..32536Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig865 32324..32536 -
1681388017.2452216-CDS-H-akashiwo_Contig865:32862..328971681388017.2452216-CDS-H-akashiwo_Contig865:32862..32897Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig865 32863..32897 -
1681388017.261562-CDS-H-akashiwo_Contig865:32998..331441681388017.261562-CDS-H-akashiwo_Contig865:32998..33144Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig865 32999..33144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388017.2753372-UTR-H-akashiwo_Contig865:33144..331451681388017.2753372-UTR-H-akashiwo_Contig865:33144..33145Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig865 33145..33145 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig865.3.1

>prot_H-akashiwo_Contig865.3.1 ID=prot_H-akashiwo_Contig865.3.1|Name=mRNA_H-akashiwo_Contig865.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=191bp
MASLLLLIALRYASAGKLGLFSVIILLLTSTQLSSAGSEKSDRKLNRIWK
RGLPYAAELHSGNYTSHVVTSPREFPIAIFFTARSPKYGCTGCPIFEQKF
QEVAQSYMALPENKRRGKNEMAFVTVAIDDAMNAFQNNQFTHVPRLYVLP
PMPEGARLKEPIDPLYEFDVNTFETKKFLQYLKDRHQIVIP
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mRNA from alignment at H-akashiwo_Contig865:30597..33145-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig865.3.1 ID=mRNA_H-akashiwo_Contig865.3.1|Name=mRNA_H-akashiwo_Contig865.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2549bp|location=Sequence derived from alignment at H-akashiwo_Contig865:30597..33145- (Heterosigma akashiwo CCMP452)
GATGGCTTCATTATTGTTATTGATAGCTCTGAGGTATGCCTCAGCAGGCA
AGCTGGGTCTCTTTTCAGTGATCATTCTTCTTCTCACATCAACTCAGTTA
TCATCTGCTGGTTCCGAGAAGTCGGACAGGAAATTGAATCGCATCTGGTA
AGCTTCGAACTAATAAATCCCCAATGTTGTACAGTGCAATGATACATGTA
CAAAGAATTAAAACACGGGATTGTATTATAAACTGTTTGACACAACAGGA
AACGAGGCCTTCCCTACGCGGCAGAGCTCCACTGTGCGTCCCCACGACAT
CCACCCGCTCGTTACCATTCATGATTACCATTGCCTTTCCAACGTTCCGC
CTCAGTACCCCCTCTGCCCTGAGTCCCATCTGCCCTGAGTATTGTTAAAC
ACACGCCATTACTTTCAACCACACTTTTTGTGCACGTTTTTCTACCACAT
GGACCCCCCCCCCCCAACACCCTGCAGTTACACCCTGTTGTTGTTTGCGA
CTTTACCTTGCCTGATCTGTATCCTTCTCTTCTCCACCCTATCCCCGCCG
CTCCTTCTTACCGTGATGTTGGCATGCCCTTGTTTCTGCTTTGTATGATA
TCAATGCAGCGGGAAACTACACCTCTCATGTTGTCACATCACCAAGGGAG
TTCCCCATCGCAATTTTTTTCACTGCTCGTTCACCCAAGTATGGCTGTAC
TGGCTGCCCGATCTTTGAGCAAAAGTTCCAGGAAGTGGCTCAGTCTTACA
TGGCTTTACCCGAGAATAAGCGCCGGGGAAAAAATGAGATGGCGTTTGTC
ACCGTTGCAATCGATGATGCAAGTATGTATGTGCCCAAAAGAGAAAACAT
GTGGTCATAGACTGCTGTAGTAACGAATTTAAGGGGCTTAATGCAGTTCT
ATTCTTATACATCTAGTCACATTTTTTTTGCGATTTGTTTTATGTTTCAT
AGGCATCAACCATAGTATACGCTTATATTCCCCTTGTTTTGATTTTTCTA
ACAGTGAATGCATTTCAGAATAACCAATTTACCCATGTTCCCAGGCTCTA
TGTGCTGCCTCCAATGCCAGAGGTGACTGTCAGCAGCATTATCATTATGA
TTAAAAGTAACTATATAAAAATGTGTGTGTGTGTGTGTGTTTTAAATTCA
GCTCATAATGAAGTCCCAAAGTTTACCAGCGCAAAAAGTACAGTCCAGAA
AACCTTCATCGTTCCAATGGACGCCAGCGTTAAAATGGTTGGCTATGGCG
TTTTTAACGTGAATTTAAGAAGAATGGACGATTAGCTACTGCAATTTCAA
CGCGGATTTTGGTGCATCATCTCATCTTCGCAAAAAGCAAACAAAAAAGA
ATTTCATTTTGAGGTTGTCTCTGATGAGACCATCATCGAGTATTGTGTTG
TTCTACAAGACTGAATTAAGATCTCAACAGAAGGCACACATCCAGCCCTA
GTTTAGCATTTAGTGACAAAAAATGCTTGTTGTAACTGTTGCTATACCTA
TACCCATTATTGTCCATGTGTGTATAGTTGTCTTCGAAGAGGAAGGTATC
CTTGTACGTGCTGCTGTTGGAGAGCGGGGTACCTTAGATCGTTCCATATG
CCCGGGATTTAAGCTCTATAGCATCTTTTGAAAATTGCCAGGGAGTTGGG
CGGAAGATGAACTGCTCTCAGTTGATGAAGGTGCTGTGGGCGTGCTGCAG
CCAGCCGAGCGGATCTCTGAGGTTTTGGGGCACCCTTATGTACCGAGATC
CTACACACTCGGGCTTGGGCATCATCCTGTGACAAAATGGGTTAAATGAC
AAGCTGGATTTGGGAGCGTGAATTTTCTTACACTACCTTTTATCTTTGCA
GAAAGCAAATGGAAAAGAGTTCCATGGAAAAGAAAAAAAATGGCGATCAT
CACGCAGTAACAAGCCGAGGCAGCGCAGTGACCATTCATGCTCAAAGTGG
GAACCGCTGGACTAGGGCAACAATAGGAGCATTTTGTTTGAAGGCTCACA
ATCGGATCACTATCGAGCAAAACTGACAACAAGCCACCAGCCTCAGCTGG
TGGTGGCCTGGCATTGACCAAAACTTGAGCTGGTGGTGGCTTGGCATTGG
CCGAAACTCAAGTCTTTTGCAGTGATGACCTGTAGTGTAGTGTAGTCTTT
CTTCTAGACCATAAAGATTTTACTCCACCTGCTTCATGATGATGGGGGCG
CCAACATTGCGCAATCAATGAAGGCATGTCTATCTGTTCAGACTGTAATG
AGTTTCAGTAGAAATATCCAAGTAATTATCAAGAGAGTCTGAATCGCTGA
AACTATCCTATAGATGATGATTAAAAAATGTTTATTGTAATTTTTGCTGC
CTTTACCCATTATCGCTCATATGTGTACAGTTGTCTTCTTAGAGGAAGAT
ATCCTTGTTTGCTGCTGTTCAATTTCCTTTGCTTTTAGGGAGCTCGACTG
AAAGAGCCAATTGATCCCCTTTACGAATTTGATGTCAATACCTTTGAAAC
CAAAAAGTTCCTGCAGTACTTGAAAGATCGCCATCAGATTGTGATTCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig865:30597..33145-

>mRNA_H-akashiwo_Contig865.3.1 ID=mRNA_H-akashiwo_Contig865.3.1|Name=mRNA_H-akashiwo_Contig865.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=573bp|location=Sequence derived from alignment at H-akashiwo_Contig865:30597..33145- (Heterosigma akashiwo CCMP452)
ATGGCTTCATTATTGTTATTGATAGCTCTGAGGTATGCCTCAGCAGGCAA
GCTGGGTCTCTTTTCAGTGATCATTCTTCTTCTCACATCAACTCAGTTAT
CATCTGCTGGTTCCGAGAAGTCGGACAGGAAATTGAATCGCATCTGGAAA
CGAGGCCTTCCCTACGCGGCAGAGCTCCACTCGGGAAACTACACCTCTCA
TGTTGTCACATCACCAAGGGAGTTCCCCATCGCAATTTTTTTCACTGCTC
GTTCACCCAAGTATGGCTGTACTGGCTGCCCGATCTTTGAGCAAAAGTTC
CAGGAAGTGGCTCAGTCTTACATGGCTTTACCCGAGAATAAGCGCCGGGG
AAAAAATGAGATGGCGTTTGTCACCGTTGCAATCGATGATGCAATGAATG
CATTTCAGAATAACCAATTTACCCATGTTCCCAGGCTCTATGTGCTGCCT
CCAATGCCAGAGGGAGCTCGACTGAAAGAGCCAATTGATCCCCTTTACGA
ATTTGATGTCAATACCTTTGAAACCAAAAAGTTCCTGCAGTACTTGAAAG
ATCGCCATCAGATTGTGATTCCG
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