mRNA_H-akashiwo_Contig864.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig864.5.1
Unique NamemRNA_H-akashiwo_Contig864.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A7S3XMB5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMB5_HETAK)

HSP 1 Score: 273 bits (699), Expect = 6.310e-91
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP
Sbjct:   78 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 213          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: W7TV02_9STRA (Atp-dependent protease la n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TV02_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.750e-65
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            V DEAEIRGHRRTYIGALPG+IL  +KKAG  +P+ LLDEVDKLG   RGGDP+AA+LEVLDPEQN  FTDHY+NLP+DLS VFF+ATAN  DTIPEPLLDRME+I +PGYT EEK+ IAE+YL+PKQL  NGL P
Sbjct:  306 VHDEAEIRGHRRTYIGALPGNILQCMKKAGTPDPLFLLDEVDKLGSSIRGGDPSAAMLEVLDPEQNSTFTDHYLNLPYDLSRVFFLATANQTDTIPEPLLDRMEVINLPGYTIEEKVFIAEQYLIPKQLAANGLSP 441          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A4D9CQU2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQU2_9STRA)

HSP 1 Score: 214 bits (545), Expect = 5.220e-62
Identity = 102/136 (75.00%), Postives = 116/136 (85.29%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            V DEAEIRGHRRTYIGALPG+IL  +KKAG  +P+ LLDEVDKLG   RGGDP+AA+LEVLDPEQN  FTDHY+NLP+DLS VFF+ATAN  DTIPEPLLDRME+I +PGYT EEK+ IAE+YL+PKQL  NGL P
Sbjct:  452 VHDEAEIRGHRRTYIGALPGNILQCMKKAGTPDPLFLLDEVDKLGSSIRGGDPSAAMLEVLDPEQNSTFTDHYLNLPYDLSRVFFLATANQTDTIPEPLLDRMEVINLPGYTIEEKVFIAEQYLIPKQLAANGLSP 587          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: D8LGC2_ECTSI (Lon protease homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGC2_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 7.550e-62
Identity = 100/135 (74.07%), Postives = 117/135 (86.67%), Query Frame = -1
Query:   10 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLG 414
            V DEAEIRGHRRTYIGA+PG I+  L++AG RNPV+LLDEVDK+G + RGGDP+AALLEVLDPEQN  FTDHYVN+PFDLS+V F+ATAN VD IPEPLLDR+E+I IPGYT EEK+ IAE YL+PKQ+  NG+G
Sbjct:  449 VHDEAEIRGHRRTYIGAMPGGIVRCLRRAGTRNPVMLLDEVDKIGSNVRGGDPSAALLEVLDPEQNDSFTDHYVNVPFDLSSVLFVATANKVDAIPEPLLDRLEVIHIPGYTLEEKVKIAEAYLIPKQMKKNGVG 583          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A3M1EQC3_9DELT (Endopeptidase La (Fragment) n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1EQC3_9DELT)

HSP 1 Score: 202 bits (513), Expect = 7.950e-61
Identity = 98/136 (72.06%), Postives = 115/136 (84.56%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            V DEAEIRGHRRTYIGA+PG I+ A+KKAG +NPV+LLDEVDKLGRH  G DPAAALLEVLDPEQNH FTDHY+  PFDLS V FI TAN+ D IP PLLDRME+I++ GYT+EEK+AIAE +L+P+Q+  +GL P
Sbjct:   23 VRDEAEIRGHRRTYIGAMPGRIIEAMKKAGTKNPVILLDEVDKLGRHFMG-DPAAALLEVLDPEQNHTFTDHYIAAPFDLSQVLFICTANARDEIPLPLLDRMEVIELSGYTQEEKIAIAENHLIPEQIAEHGLRP 157          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A4P9Z4W8_9FUNG (Lon protease C-terminal proteolytic domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z4W8_9FUNG)

HSP 1 Score: 204 bits (518), Expect = 2.460e-60
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            V DEAEIRGHRRTY+GA+PG I+  ++K G  +PVLLLDE+DK+G+H+  GDP+AALLEVLDPEQNH FTDHY+N+PFDLS   FIATAN +DTIP PLLDRME+I++ GYT  EKLAIA R+LLPKQ   +GL P
Sbjct:  165 VRDEAEIRGHRRTYVGAMPGLIIQGMRKCGNNDPVLLLDEIDKVGQHSMHGDPSAALLEVLDPEQNHAFTDHYLNIPFDLSQALFIATANRIDTIPAPLLDRMEVIELSGYTANEKLAIARRHLLPKQAAAHGLAP 300          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A661NVN4_9DELT (Lon protease n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661NVN4_9DELT)

HSP 1 Score: 204 bits (518), Expect = 5.900e-59
Identity = 96/136 (70.59%), Postives = 117/136 (86.03%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            V DEAEIRGHRRTY+G+ PG I+ A KKAG+RNPV+LLDEVDK+GR  +G DP +ALLEVLDPEQN +F DHY+++PFDLS V F+ATAN  DTIP PLLDRME+I++PGYTREEKLAIA+++L+PKQL  +GL P
Sbjct:  388 VQDEAEIRGHRRTYVGSFPGRIIGAFKKAGSRNPVMLLDEVDKMGRDFQG-DPGSALLEVLDPEQNSEFVDHYLDVPFDLSQVLFVATANRKDTIPRPLLDRMEMIELPGYTREEKLAIAQQFLIPKQLSEHGLSP 522          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A6M1SHP4_HALSX (AAA family ATPase (Fragment) n=1 Tax=Halomonas sp. TaxID=1486246 RepID=A0A6M1SHP4_HALSX)

HSP 1 Score: 189 bits (481), Expect = 6.110e-59
Identity = 96/137 (70.07%), Postives = 112/137 (81.75%), Query Frame = -1
Query:    4 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGPR 414
            V DEAEIRGHRRTYIGALPG I+ +L K G +NP+ LLDEVDK+G   RG DP+AALLEVLDPEQNH F DHYV L FDLS V F+ATAN+++ IP PLLDRME+I++ GYT +EK+AIAERYLLPKQ+  NGL  R
Sbjct:   18 VRDEAEIRGHRRTYIGALPGRIIQSLIKVGVKNPLFLLDEVDKIGVDFRG-DPSAALLEVLDPEQNHAFQDHYVELDFDLSEVMFVATANTLN-IPAPLLDRMEVIRLSGYTEDEKIAIAERYLLPKQMKANGLKKR 152          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A7C5ASK4_9CHLR (Endopeptidase La (Fragment) n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C5ASK4_9CHLR)

HSP 1 Score: 198 bits (504), Expect = 7.300e-59
Identity = 95/136 (69.85%), Postives = 116/136 (85.29%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            V DEAEIRGHRRTYIGA+PG I+ A+++AG+RNPV +LDEVDKLG   RG DPA+ALLEVLDPEQN +F DHY+++PFDLS V FIATAN +DTIPEPL DRME++Q+ GYT +EKLAIA+ YL+P+Q+  NGL P
Sbjct:   86 VHDEAEIRGHRRTYIGAMPGRIIQAIRRAGSRNPVFMLDEVDKLGHDFRG-DPASALLEVLDPEQNREFRDHYLDVPFDLSQVIFIATANVLDTIPEPLRDRMEILQLSGYTEQEKLAIAKGYLIPRQIRENGLRP 220          
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Match: A0A0S8EJR4_9DELT (Lon proteolytic domain-containing protein (Fragment) n=1 Tax=Myxococcales bacterium SG8_38_1 TaxID=1703408 RepID=A0A0S8EJR4_9DELT)

HSP 1 Score: 196 bits (497), Expect = 7.990e-59
Identity = 94/136 (69.12%), Postives = 115/136 (84.56%), Query Frame = -1
Query:    7 VSDEAEIRGHRRTYIGALPGSILTALKKAGARNPVLLLDEVDKLGRHARGGDPAAALLEVLDPEQNHQFTDHYVNLPFDLSAVFFIATANSVDTIPEPLLDRMELIQIPGYTREEKLAIAERYLLPKQLGLNGLGP 414
            VSDEAE+RGHRRTY+GA PG I++ALKKA ++NPV++LDE+DKLGR  RG DPA+ALLEVLDPEQN+QFTDHY+++PFDLS V FIATAN   TIP  LLDRME+I++PGYT  EK AIA  +L+P+QL  +GL P
Sbjct:    2 VSDEAEVRGHRRTYVGAFPGRIISALKKADSKNPVVILDEIDKLGRDQRG-DPASALLEVLDPEQNNQFTDHYLDVPFDLSKVMFIATANQKSTIPGALLDRMEVIELPGYTSREKRAIARDFLIPRQLSDHGLSP 136          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig864.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XMB5_HETAK6.310e-91100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TV02_9STRA1.750e-6575.00Atp-dependent protease la n=1 Tax=Nannochloropsis ... [more]
A0A4D9CQU2_9STRA5.220e-6275.00Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
D8LGC2_ECTSI7.550e-6274.07Lon protease homolog n=1 Tax=Ectocarpus siliculosu... [more]
A0A3M1EQC3_9DELT7.950e-6172.06Endopeptidase La (Fragment) n=2 Tax=Deltaproteobac... [more]
A0A4P9Z4W8_9FUNG2.460e-6069.12Lon protease C-terminal proteolytic domain-contain... [more]
A0A661NVN4_9DELT5.900e-5970.59Lon protease n=1 Tax=Deltaproteobacteria bacterium... [more]
A0A6M1SHP4_HALSX6.110e-5970.07AAA family ATPase (Fragment) n=1 Tax=Halomonas sp.... [more]
A0A7C5ASK4_9CHLR7.300e-5969.85Endopeptidase La (Fragment) n=1 Tax=Chloroflexi ba... [more]
A0A0S8EJR4_9DELT7.990e-5969.12Lon proteolytic domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig864contigH-akashiwo_Contig864:204985..205399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog237727.NAP1_02660
Model size417
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.83e-16
EggNOG OGs28J1Q@1|root,2Z8YK@2|Bacteria,1R29N@1224|Proteobacteria,2TV1C@28211|Alphaproteobacteria
Cds size414
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388016.9503455-CDS-H-akashiwo_Contig864:204984..2053981681388016.9503455-CDS-H-akashiwo_Contig864:204984..205398Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig864 204985..205398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig864.5.1prot_H-akashiwo_Contig864.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig864 204985..205398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig864.5.1

>prot_H-akashiwo_Contig864.5.1 ID=prot_H-akashiwo_Contig864.5.1|Name=mRNA_H-akashiwo_Contig864.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=138bp
AARAQPVEAQLLGQQVALGNGQLLLARVPRDLDQLHAVQQRLGDGVHAVG
GRDEEDRAQVEGQVDVVVRELVVLLRVQHLEQGRGRVPPTGVPAQLVHLV
QQQHGVPGARLLQRGQDAARQRPDVRAPVAADLGLVGD
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mRNA from alignment at H-akashiwo_Contig864:204985..205399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig864.5.1 ID=mRNA_H-akashiwo_Contig864.5.1|Name=mRNA_H-akashiwo_Contig864.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=415bp|location=Sequence derived from alignment at H-akashiwo_Contig864:204985..205399+ (Heterosigma akashiwo CCMP452)
GCCGCGCGGGCCCAGCCCGTTGAGGCCCAGCTGCTTGGGCAGCAGGTAGC GCTCGGCAATGGCCAGCTTCTCCTCGCGCGTGTACCCCGGGATCTGGATC AGCTCCATGCGGTCCAGCAGCGGCTCGGGGATGGTGTCCACGCTGTTGGC GGTCGCGATGAAGAAGACCGCGCTCAGGTCGAAGGGCAGGTTGACGTAGT GGTCCGTGAACTGGTGGTTCTGCTCCGGGTCCAGCACCTCGAGCAGGGCC GCGGCCGGGTCCCCCCCACGGGCGTGCCGGCCCAGCTTGTCCACCTCGTC CAGCAGCAGCACGGGGTTCCGGGCGCCCGCCTTCTTCAGCGCGGTCAGGA TGCTGCCCGGCAGCGCCCCGATGTACGTGCGCCGGTGGcCGCGGATCTCG GCCTCGTCGGAGACG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig864:204985..205399+

>mRNA_H-akashiwo_Contig864.5.1 ID=mRNA_H-akashiwo_Contig864.5.1|Name=mRNA_H-akashiwo_Contig864.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=414bp|location=Sequence derived from alignment at H-akashiwo_Contig864:204985..205399+ (Heterosigma akashiwo CCMP452)
GCCGCGCGGGCCCAGCCCGTTGAGGCCCAGCTGCTTGGGCAGCAGGTAGC
GCTCGGCAATGGCCAGCTTCTCCTCGCGCGTGTACCCCGGGATCTGGATC
AGCTCCATGCGGTCCAGCAGCGGCTCGGGGATGGTGTCCACGCTGTTGGC
GGTCGCGATGAAGAAGACCGCGCTCAGGTCGAAGGGCAGGTTGACGTAGT
GGTCCGTGAACTGGTGGTTCTGCTCCGGGTCCAGCACCTCGAGCAGGGCC
GCGGCCGGGTCCCCCCCACGGGCGTGCCGGCCCAGCTTGTCCACCTCGTC
CAGCAGCAGCACGGGGTTCCGGGCGCCCGCCTTCTTCAGCGCGGTCAGGA
TGCTGCCCGGCAGCGCCCCGATGTACGTGCGCCGGTGGcCGCGGATCTCG
GCCTCGTCGGAGAC
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