mRNA_H-akashiwo_Contig864.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig864.1.1
Unique NamemRNA_H-akashiwo_Contig864.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A7S3Y8S1_HETAK (Hypothetical protein (Fragment) n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8S1_HETAK)

HSP 1 Score: 339 bits (869), Expect = 3.140e-115
Identity = 166/214 (77.57%), Postives = 181/214 (84.58%), Query Frame = 1
Query:    1 MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGA-GVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGAG 639
            +RHGQ L+GLP+VCDGCG PFSLEHAL C KGG +K GHD + DE  HL ++AYGA GVKKEPFLRDASG V DKDLRADF+A+ VWERQRVAFFDNRILDADAPSRF+ N SY TAMRAAVQEKK +Y ERCE++AGSFTPLVCTVDGVFHRE+VAFMKRVAAALA KW K Y  VMCWVR+RLQFALIRAVDLRLRGSR  F   G  D AG
Sbjct:   28 LRHGQELRGLPSVCDGCGAPFSLEHALNCMKGGNIKLGHDQVRDECVHLCTMAYGAAGVKKEPFLRDASGNVRDKDLRADFLAIGVWERQRVAFFDNRILDADAPSRFDRNTSYVTAMRAAVQEKKTRYLERCEEMAGSFTPLVCTVDGVFHREFVAFMKRVAAALAGKWGKSYEEVMCWVRIRLQFALIRAVDLRLRGSRMRFQKAGFSDKAG 241          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A7S3XPK9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPK9_HETAK)

HSP 1 Score: 217 bits (552), Expect = 1.750e-69
Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 1
Query:   64 SLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDASG-KVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGS 414
            SLEHALCCKKGG +KKG+D +VDESCHLASLAYGAGVKKEPFLRDASG KVLDKDLRADFMA SVWERQRVAFFDNRILDADAPSRFN NMSY TAMR AVQEKKKKYQERCEDLAGS
Sbjct:    1 SLEHALCCKKGGNMKKGYDQLVDESCHLASLAYGAGVKKEPFLRDASGGKVLDKDLRADFMAHSVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYQERCEDLAGS 118          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A6V1VIF5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VIF5_HETAK)

HSP 1 Score: 216 bits (549), Expect = 3.620e-69
Identity = 104/108 (96.30%), Postives = 105/108 (97.22%), Query Frame = 1
Query:  331 MSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGAGMGLVY 654
            MSY TAMR AVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHRE+VAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFH FGLMDGAGMGLVY
Sbjct:    1 MSYVTAMRTAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREFVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHGFGLMDGAGMGLVY 108          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A0K8SWD2_LYGHE (Uncharacterized protein (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SWD2_LYGHE)

HSP 1 Score: 219 bits (557), Expect = 6.860e-68
Identity = 113/212 (53.30%), Postives = 137/212 (64.62%), Query Frame = 1
Query:    1 MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGA 636
            +R+G   +GLPA+CDGCG   ++ HAL CKKGGLVK GHD + DE   LASLA+  GV  EP L+DAS       L AD  A  VWE  R A+FD RI++ADAPS       + T    A +EK  KY    EDL GSFTPL+ + DGV HRE+  F KR+AA L EKW KP+  V+ WVRV+LQ A+IRAV LR+RG+RK   C G  DGA
Sbjct:   72 LRYGHTPEGLPALCDGCGSIMNVTHALNCKKGGLVKHGHDQVRDECARLASLAW-EGVATEPVLQDASANA--PMLVADIKAEGVWESGRAAYFDTRIINADAPS--YRGQEWSTISNNAAREKHNKYNRAAEDLRGSFTPLIISCDGVMHREFGVFSKRIAAVLNEKWSKPFSQVVSWVRVKLQMAVIRAVSLRIRGARKRVRCLGAEDGA 278          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A7S3XPJ1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPJ1_HETAK)

HSP 1 Score: 208 bits (529), Expect = 1.020e-65
Identity = 105/133 (78.95%), Postives = 117/133 (87.97%), Query Frame = 1
Query:  112 GHDHMVDESC-HLASLAYG-AGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEK 504
            G D +V + C HL ++AYG AGVKKEPFLR+ASG V DKDLRADFMA+ VWERQRVAFFDNRILDADAPSRFN NMSY TAMR AVQEKKKKY ERCE++AGSFTPLVCT+D VFH+E+VAFMKR+AAALA K
Sbjct:    5 GPDQVVRDECVHLCAMAYGVAGVKKEPFLREASGNVRDKDLRADFMAIGVWERQRVAFFDNRILDADAPSRFNRNMSYVTAMRTAVQEKKKKYLERCEEMAGSFTPLVCTLDRVFHQEFVAFMKRMAAALAGK 137          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A0K8SU65_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8SU65_LYGHE)

HSP 1 Score: 209 bits (532), Expect = 4.680e-65
Identity = 106/206 (51.46%), Postives = 136/206 (66.02%), Query Frame = 1
Query:   28 LPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDAS-GKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGAGM 642
            LP  CDGCG PF L HAL CK+GGLVK+GHD + DE   LA LA+G G   EP L+++S G  +   L AD     VWE  R AFFD RI++ADA S  +   ++ +  ++A + K +KY    E L GSFTPL+C+ DG  HREY  F KR+A+ LAEKW +PY +V+ WV+VR Q ++IRAV LRLRG+RK     GL DGAG+
Sbjct:   12 LPEKCDGCGAPFDLNHALNCKRGGLVKRGHDSVRDECAKLAGLAWG-GASVEPVLQESSEGSPM---LVADIKVQGVWESARPAFFDTRIVNADAASYLS--QTWESTAQSAARRKHEKYDRAAEHLRGSFTPLICSCDGALHREYTVFQKRLASTLAEKWSRPYSLVLGWVKVRTQVSIIRAVSLRLRGTRKIIRSLGLEDGAGV 211          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A6A4JU40_APOLU (Uncharacterized protein n=1 Tax=Apolygus lucorum TaxID=248454 RepID=A0A6A4JU40_APOLU)

HSP 1 Score: 204 bits (520), Expect = 2.890e-63
Identity = 103/217 (47.47%), Postives = 141/217 (64.98%), Query Frame = 1
Query:    1 MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGAGMGLV 651
            MR+G    GLPA CDGCGE  SL HAL CKKGGLVK GHD++ DE   LA+LA+G GV  EP +R+A+       L AD   + VW+  RVAFFDNRI++ADAPS   C   +    + A +EK +KY +  ED+ GSFTPL+ + DG  H+E+ AF+K+ A  L+EKW +    +  +++V++Q  ++RAV +RLRG+RK     G  DGA + L+
Sbjct:    1 MRYGYEPSGLPASCDGCGESMSLTHALNCKKGGLVKWGHDYVRDECAMLANLAWG-GVATEPVMREAANG--QPALIADIQDIGVWDSGRVAFFDNRIINADAPS--YCTREWSAVSQQAAREKHRKYDQAAEDVRGSFTPLIVSCDGALHKEFQAFLKKAANRLSEKWGRDLSEISGFLKVKVQITVLRAVSMRLRGTRKKIRSLGTEDGAILPLL 212          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A0K8T2B6_LYGHE (Uncharacterized protein n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0K8T2B6_LYGHE)

HSP 1 Score: 201 bits (510), Expect = 7.570e-62
Identity = 102/205 (49.76%), Postives = 128/205 (62.44%), Query Frame = 1
Query:   22 QGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGA 636
            +GLP  CDGCG  F + HAL CKKGGLVK+GHDH+ D    L  +A+G G   EP LR+A G +    L AD     VW+ +R AFFD RI++ADA S    +  + T   AA +EK  KY    EDL GSFTPLV + +G  H E+  F+KR+A  L+EKW +PY  V+ W R +LQ A IRAV+LRLR SR+   C G  DGA
Sbjct:    3 EGLPRFCDGCGAAFDINHALNCKKGGLVKRGHDHLRDCCAKLGDMAWG-GATTEPVLREADGSL--PALIADIKIQGVWDSERPAFFDTRIVNADAAS--YSSQDWDTTACAAAREKHAKYDRAAEDLRGSFTPLVSSCEGALHSEFAMFVKRLAFTLSEKWDRPYSQVVGWARTKLQLATIRAVNLRLRCSRRKLRCLGAEDGA 202          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A7S4DD50_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD50_HETAK)

HSP 1 Score: 204 bits (519), Expect = 1.100e-61
Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1
Query:    1 MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDN 288
            MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDH+VDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMA SVWERQRVAFFDN
Sbjct:  228 MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHLVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMAHSVWERQRVAFFDN 323          
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Match: A0A146L7G5_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A146L7G5_LYGHE)

HSP 1 Score: 216 bits (549), Expect = 3.170e-61
Identity = 111/217 (51.15%), Postives = 140/217 (64.52%), Query Frame = 1
Query:    1 MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLASLAYGAGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILDADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVFHREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSRKAFHCFGLMDGAGMGLV 651
            MR+G    GLP  CDGCGE   L HAL CKKGGLVK GHD++ DE   LA+LA+G GV  EP LRDA+G      L AD  A  VWE  RVAFFDNRI++ADAPS   C   +      A +EK +KY +  ED+  SFTPL+ + +GV H+E+ AF+KRVA  L +KW  P      +V+V++QFA++RAV LRLRG+RK     G  DGA + L+
Sbjct:  808 MRYGYEPSGLPTFCDGCGELMGLTHALNCKKGGLVKWGHDYVRDECAMLANLAWG-GVTTEPVLRDAAGG--QPALIADIQANGVWESGRVAFFDNRIINADAPS--YCTREWSAVSHQAAREKHRKYDQAAEDVRSSFTPLIASCEGVLHKEFEAFLKRVAGKLTDKWETPLSQTTSFVKVKMQFAVLRAVSLRLRGTRKRLRSLGTEDGAVLPLL 1019          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig864.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y8S1_HETAK3.140e-11577.57Hypothetical protein (Fragment) n=4 Tax=Heterosigm... [more]
A0A7S3XPK9_HETAK1.750e-6991.53Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6V1VIF5_HETAK3.620e-6996.30Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A0K8SWD2_LYGHE6.860e-6853.30Uncharacterized protein (Fragment) n=1 Tax=Lygus h... [more]
A0A7S3XPJ1_HETAK1.020e-6578.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0K8SU65_LYGHE4.680e-6551.46Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A6A4JU40_APOLU2.890e-6347.47Uncharacterized protein n=1 Tax=Apolygus lucorum T... [more]
A0A0K8T2B6_LYGHE7.570e-6249.76Uncharacterized protein n=1 Tax=Lygus hesperus Tax... [more]
A0A7S4DD50_HETAK1.100e-6197.92Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A146L7G5_LYGHE3.170e-6151.15Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig864contigH-akashiwo_Contig864:64201..64857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog400682.PAC_15705610
PFAMsRVT_1
Model size657
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.26e-50
EggNOG OGs2E24P@1|root,2S9D9@2759|Eukaryota,3A6X8@33154|Opisthokonta,3BYHR@33208|Metazoa
Cds size657
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388016.8620462-CDS-H-akashiwo_Contig864:64200..648571681388016.8620462-CDS-H-akashiwo_Contig864:64200..64857Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig864 64201..64857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig864.1.1prot_H-akashiwo_Contig864.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig864 64201..64857 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig864.1.1

>prot_H-akashiwo_Contig864.1.1 ID=prot_H-akashiwo_Contig864.1.1|Name=mRNA_H-akashiwo_Contig864.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=219bp
MRHGQGLQGLPAVCDGCGEPFSLEHALCCKKGGLVKKGHDHMVDESCHLA
SLAYGAGVKKEPFLRDASGKVLDKDLRADFMALSVWERQRVAFFDNRILD
ADAPSRFNCNMSYGTAMRAAVQEKKKKYQERCEDLAGSFTPLVCTVDGVF
HREYVAFMKRVAAALAEKWHKPYGVVMCWVRVRLQFALIRAVDLRLRGSR
KAFHCFGLMDGAGMGLVY*
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mRNA from alignment at H-akashiwo_Contig864:64201..64857-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig864.1.1 ID=mRNA_H-akashiwo_Contig864.1.1|Name=mRNA_H-akashiwo_Contig864.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=657bp|location=Sequence derived from alignment at H-akashiwo_Contig864:64201..64857- (Heterosigma akashiwo CCMP452)
ATGCGGCACGGGCAGGGTCTCCAGGGGCTGCCAGCAGTCTGTGATGGGTG TGGAGAGCCTTTTAGCTTGGAGCATGCCCTGTGCTGCAAGAAGGGGGGCC TTGTGAAGAAAGGGCATGACCATATGGTGGATGAGAGTTGCCACCTGGCG AGCTTGGCTTACGGGGCTGGGGTGAAGAAGGAGCCTTTCCTGAGGGATGC CAGTGGGAAGGTGCTGGACAAGGACCTTCGGGCGGACTTCATGGCTCTTA GTGTGTGGGAGAGACAGAGGGTGGCGTTTTTTGACAACCGCATTTTAGAT GCTGACGCACCTTCTCGTTTCAACTGCAATATGAGCTATGGGACTGCTAT GCGCGCCGCAGTACAGGAGAAGAAGAAGAAATACCAGGAGCGCTGCGAGG ACCTGGCTGGGAGCTTCACACCTTTAGTCTGCACGGTGGATGGGGTCTTT CACAGGGAGTATGTCGCTTTCATGAAGAGGGTGGCGGCTGCGCTCGCGGA GAAATGGCATAAGCCCTATGGGGTGGTGATGTGCTGGGTAAGGGTACGGC TGCAGTTTGCACTGATCCGGGCTGTGGACCTGAGACTGCGTGGGTCGAGG AAGGCGTTTCATTGTTTCGGCCTGATGGATGGGGCTGGTATGGGTCTGGT GTATTAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig864:64201..64857-

>mRNA_H-akashiwo_Contig864.1.1 ID=mRNA_H-akashiwo_Contig864.1.1|Name=mRNA_H-akashiwo_Contig864.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=657bp|location=Sequence derived from alignment at H-akashiwo_Contig864:64201..64857- (Heterosigma akashiwo CCMP452)
ATGCGGCACGGGCAGGGTCTCCAGGGGCTGCCAGCAGTCTGTGATGGGTG
TGGAGAGCCTTTTAGCTTGGAGCATGCCCTGTGCTGCAAGAAGGGGGGCC
TTGTGAAGAAAGGGCATGACCATATGGTGGATGAGAGTTGCCACCTGGCG
AGCTTGGCTTACGGGGCTGGGGTGAAGAAGGAGCCTTTCCTGAGGGATGC
CAGTGGGAAGGTGCTGGACAAGGACCTTCGGGCGGACTTCATGGCTCTTA
GTGTGTGGGAGAGACAGAGGGTGGCGTTTTTTGACAACCGCATTTTAGAT
GCTGACGCACCTTCTCGTTTCAACTGCAATATGAGCTATGGGACTGCTAT
GCGCGCCGCAGTACAGGAGAAGAAGAAGAAATACCAGGAGCGCTGCGAGG
ACCTGGCTGGGAGCTTCACACCTTTAGTCTGCACGGTGGATGGGGTCTTT
CACAGGGAGTATGTCGCTTTCATGAAGAGGGTGGCGGCTGCGCTCGCGGA
GAAATGGCATAAGCCCTATGGGGTGGTGATGTGCTGGGTAAGGGTACGGC
TGCAGTTTGCACTGATCCGGGCTGTGGACCTGAGACTGCGTGGGTCGAGG
AAGGCGTTTCATTGTTTCGGCCTGATGGATGGGGCTGGTATGGGTCTGGT
GTATTAG
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