mRNA_H-akashiwo_Contig863.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig863.3.1
Unique NamemRNA_H-akashiwo_Contig863.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig863.3.1 vs. uniprot
Match: A0A7S2G3T4_9EUKA (Mannosyltransferase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2G3T4_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 5.810e-6
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 2 
Query:    8 GRPYSVHIGVDAAMTGVARFWEQGDPAAWVYSKQEGPGVDLAAHDF 145
            GRP SVH+GV+AAM+GV+RF EQ  P+ W YSK+EG    L A DF
Sbjct:  698 GRPISVHVGVEAAMSGVSRFLEQ--PSPWRYSKREG----LEAADF 737
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig863.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2G3T4_9EUKA5.810e-660.87Mannosyltransferase n=1 Tax=Haptolina brevifila Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig863contigH-akashiwo_Contig863:146480..146983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size203
Hectar predicted targeting categoryother localisation
Exons2
Cds size201
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388016.64467-CDS-H-akashiwo_Contig863:146479..1465321681388016.64467-CDS-H-akashiwo_Contig863:146479..146532Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig863 146480..146532 +
1681388016.653849-CDS-H-akashiwo_Contig863:146833..1469811681388016.653849-CDS-H-akashiwo_Contig863:146833..146981Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig863 146834..146981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig863.3.1prot_H-akashiwo_Contig863.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig863 146480..146981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig863.3.1

>prot_H-akashiwo_Contig863.3.1 ID=prot_H-akashiwo_Contig863.3.1|Name=mRNA_H-akashiwo_Contig863.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=67bp
QLGTPILGPYWGGCSNDRRGAVLGAGGPRGLGVLQAGGAGRGPRRPRLPA
GGGPRPGGAGGQLQGPR
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mRNA from alignment at H-akashiwo_Contig863:146480..146983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig863.3.1 ID=mRNA_H-akashiwo_Contig863.3.1|Name=mRNA_H-akashiwo_Contig863.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=504bp|location=Sequence derived from alignment at H-akashiwo_Contig863:146480..146983+ (Heterosigma akashiwo CCMP452)
CAACTTGGGACGCCCATACTCGGTCCATATTGGGGTGGATGCAGCAATGA
CAGGTGAAGACTAGCTACGTTTCTGTTGCCCACAACTTGGGCCTCCACTC
AGATGAGCACTCTATTGCATACCCCGAAACACCCCACTAACCACCACCCT
AGCAGCTTTGTATTCTTGAAAGGTGGGCAAAACAGAAGAAGAAAGGTGCA
TTGTGGGCCCCTGTTGTCACACTCGCACCCATTTCGGCCCGACACCTTAC
CCACCTTCAATGCACCTTCTTTCGCCTCTCCCTTGCCGCCCCTCCCTCCC
CTTGTCTTGCCTCCCCGCCCCTCCCCGCCCCTGCCCCTTGCCCCCCACCT
CCAGGCGTGGCGCGGTTCTGGGAGCAGGGGGACCCCGCGGCCTGGGTGTA
CTCCAAGCAGGAGGGGCCGGGCGTGGACCTCGCCGCCCACGACTTCCTGC
TGGCGGCGGCCCCCGCCCTGGAGGGGCCGGGGGGCAACTTCAAGGCCCTC
GCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig863:146480..146983+

>mRNA_H-akashiwo_Contig863.3.1 ID=mRNA_H-akashiwo_Contig863.3.1|Name=mRNA_H-akashiwo_Contig863.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=201bp|location=Sequence derived from alignment at H-akashiwo_Contig863:146480..146983+ (Heterosigma akashiwo CCMP452)
CAACTTGGGACGCCCATACTCGGTCCATATTGGGGTGGATGCAGCAATGA
CAGGCGTGGCGCGGTTCTGGGAGCAGGGGGACCCCGCGGCCTGGGTGTAC
TCCAAGCAGGAGGGGCCGGGCGTGGACCTCGCCGCCCACGACTTCCTGCT
GGCGGCGGCCCCCGCCCTGGAGGGGCCGGGGGGCAACTTCAAGGCCCTCG
C
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