mRNA_H-akashiwo_Contig854.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig854.3.1
Unique NamemRNA_H-akashiwo_Contig854.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A7R9ZKT3_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZKT3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 3.120e-59
Identity = 109/252 (43.25%), Postives = 155/252 (61.51%), Query Frame = 1
Query:  148 TSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTETTSGFIVYIPQGKLLMVPSDTVHGGGFKAGENGILRFHLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFF 903
            TSII+MD  ++R  + L  ++G+L ++    +  +R   P +  +A+V DFNEN+S+AM + R L  +  ++        A  +    +   V  FE  L+ AVGD   +I+YQGSF+KT+ T+PQP HVDF WE L +  D+ FI FFPL+DEGMFLQLW N    E   G +V++P GKLL++P+ TVHGGGF+  E+G  RFHLY+AS G  LP    NKYTE ++  +E+ +RL D+  L  L    F
Sbjct:  132 TSIILMDGINSRCMQTLSQYNGRLSNLDPSFVRHVRSIMP-NQPSARVADFNENISFAMLNQRKLRHLASRS--------AEKDQESIVADLVDEFENKLRWAVGDD--VIDYQGSFLKTEATVPQPAHVDFTWEYLDQEDDKLFIGFFPLSDEGMFLQLWCNTKPGEPELGQMVFVPPGKLLVLPASTVHGGGFRTCESGNPRFHLYIASHGRPLPDHQQNKYTERNNKARELCERLTDAQGLDVLTDVLF 372          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: B8C3F2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3F2_THAPS)

HSP 1 Score: 200 bits (508), Expect = 4.700e-58
Identity = 120/302 (39.74%), Postives = 180/302 (59.60%), Query Frame = 1
Query:   46 NDEDEPEWDAILPQNAVFDGHSRSELRHFYDQLRTSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQD-GRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTE-----TTSGFIVYIPQGKLLMVPSDTVHGGGFKAGENGILRFHLYV--------ASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFFDN 909
            N+ +   +D  LP N     HS +E  H      +SI+V+D  S + Q LL+T+   L D+ + L+E +RD  P  L AA+VGDFNENL Y MQD  + + S+I    ++ G+ G   +    L ++V  FE+A++EA+      ++Y+GS+++T+ T+ QP HVD+ + +L++   + F+AFFPLT EG FLQLW    K +     T  G +VY+P GK+L+VPSDT+HGGGFK G  G LRFHLY+        A     L     N+YTEE D  +E+ +R +D++ L  L+G FF++
Sbjct:   71 NNSNSLHFDLNLPPN-----HSLTEDEHHLCDALSSIVVLDSHSCKVQGLLDTYSAHLIDMGNHLLEGLRDCAPTQL-AARVGDFNENLFYEMQDCEKDIGSII----LDSGVVGGDVDRIL-LNKDVQEFESAIREALKHDK--LDYRGSYLQTEQTMYQPAHVDYDYHILKQYGGKLFLAFFPLTTEGTFLQLWKATTKDDYDDSTTVEGTVVYVPYGKMLIVPSDTIHGGGFKRGCTGNLRFHLYIELLEDDNEAFQQGELLNHPMNRYTEEHDRRRELCERFVDANGLDRLLGVFFED 359          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: K0S6F9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S6F9_THAOC)

HSP 1 Score: 191 bits (484), Expect = 1.320e-53
Identity = 107/267 (40.07%), Postives = 157/267 (58.80%), Query Frame = 1
Query:  154 IIVMD-PCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGR-GLLSVIQQA--RMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTET-TSGFIVYIPQGKLLMVPSDTVHGGGFKAGENGILRFHLYVA-----------SGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFFD 906
            ++ +D P       +L+  D +L  V + L+  +R+  P D  AA+VGD+NENL Y M+ G   +  +I+ A  R++ G +G+  +     + +V  FE +L+ A+G     + Y+GSFM+TD +IPQP HVD+ + +L E   R  +AFFPLT+EG +LQLW +    E  T G +V+IP G++L+VPSDT+HGGGF+ G  G LRFHLYV             GG  L     N+YTE  D  +E+ +R +D+  L  LVG FFD
Sbjct:  179 VVALDSPSRPEVAAILQRHDARLVHVGADLLRGLREAAP-DRLAARVGDYNENLMYEMRGGDLDVAGIIRSAGRRLDDGGDGSARDHGGMPVDDVRDFETSLRRALGHDD--LRYRGSFMRTDVSIPQPAHVDYDYPVLSEHGRRLHLAFFPLTEEGCYLQLWQHEDDAEVETEGTVVHIPHGRMLIVPSDTIHGGGFRRGPTGNLRFHLYVELLGDGNTEEEEDGGPRLLDRPVNRYTERHDRRRELCERYVDARGLDRLVGTFFD 442          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A7S2IH65_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IH65_9STRA)

HSP 1 Score: 182 bits (461), Expect = 8.740e-52
Identity = 108/274 (39.42%), Postives = 155/274 (56.57%), Query Frame = 1
Query:  106 HSRSELRHFYDQLRTS-------IIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTETT-SGFIVYIPQGKLLMVPSDTVHGGGFKAGENGILRFHLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFF 903
            H   E R   D L+         I+V+D  S R Q+ L +F G L ++    I+ ++   P+    A+V DFN+NL Y MQ  +GL  +             + E    LLQ             G ++ ++   GS++ TDTTIPQPPHVD+ WE+L+E      + FFPLT+EGMFLQ+WP R K E    G IV++P GKLL++P+ T+HGGGF+   NG LRFHLY+++    LP   TNKYTE DD ++E+S+R +++  +KEL+   F
Sbjct:   55 HGNDENRKSNDPLQNKLIEALQGIVVLDS-SVRHQKWLISFRGILHNLPEAWIQRVKAQSPIQF-TARVADFNDNLFYQMQPQKGLQHL------------GLGELQGGLLQ-------------GQANDVL---GSYLHTDTTIPQPPHVDYTWEILEEHGSDLQVGFFPLTEEGMFLQVWPTRPKEEKIIEGQIVFVPYGKLLVLPATTIHGGGFRTNTNGNLRFHLYLST--TKLPTHQTNKYTEPDDKSRELSERYVNNPHMKELLEHLF 296          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A7S4T7Z9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T7Z9_9STRA)

HSP 1 Score: 178 bits (452), Expect = 1.860e-50
Identity = 104/288 (36.11%), Postives = 157/288 (54.51%), Query Frame = 1
Query:   67 WDAILPQNAVF----DGHSRSELRHFYDQLRTSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNR-----CKTETTSGFIVYIPQGKLLMVPSDTVHGGGFKAGENGILRFHLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFF 903
            W+++L  N  +    DGH     R   + L+  II+      + Q  L  F+G L D+   LI  ++   P+   +A+V DFN+NL Y MQ  +GL  +      N  +EG  +++                             GSF+ TD+T+PQPPHVD+ WE+L+E      + FFPLT+EGMFLQ+WP +        ++  G I+YIP GKLL++P+ T+HGGGF+   NG LRFHLY++   + LP   TNKYTE +D ++E+S+R I++  ++EL+   F
Sbjct:   46 WNSLLQGNREYPECCDGH-----RDLIEALQKIIILNG--DRQHQSWLNDFNGTLYDLPEALIRHVKTQAPVQF-SARVADFNDNLFYQMQSQKGLQHLGLAKLQNGLLEGQANDAL----------------------------GSFLNTDSTVPQPPHVDYTWEILEEHGGELQLGFFPLTEEGMFLQVWPTQPPHGASLEKSIHGQIIYIPYGKLLVLPATTIHGGGFRTSANGNLRFHLYLSH--SKLPDHQTNKYTEPNDKSRELSERYINAPYMEELLEHLF 295          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A448YY94_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY94_9STRA)

HSP 1 Score: 172 bits (436), Expect = 2.000e-47
Identity = 113/311 (36.33%), Postives = 156/311 (50.16%), Query Frame = 1
Query:   67 WDAILPQNA----VFDGHSRSELRHFYDQLRTSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKD-------RFFIAFFPLTDEGMFLQLWPNRCKTETTS----GFIVYIPQGKLLMVPSDTVHGGGFK---------------AGEN--GILRFHLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFF 903
            W  ++  +A    V +GH             +SIIV+      ++  LE F G+L  VSS L +E+R   P     + V DFN+NL Y +Q                       E  P       R   A++EA+  +  + EY GSF+ T +TIPQP HVD+ WE+L++  D          + FFPLT+EGMFLQ+WP  C  +  S    G +V+IP GK+L++P+ T+HGGGF+               +G N  G LRFHLY A+  ASLP   TNKYTE  D TKE+S R +DS  +  L+  FF
Sbjct:   66 WKNMVRSDASATXVPNGHETIHXEELLSDSLSSIIVLRDEXEHSE-WLEQFGGQLSXVSSELCQELRKHAPDLYNMSTVADFNDNLCYHVQ----------------------REKGPE--HPAPRTNRAIEEALETTLEVAEYLGSFLATKSTIPQPAHVDYPWEVLEKHGDGDHQSPGHLKLGFFPLTEEGMFLQVWPTACPXQDRSIEIEGQLVFIPYGKMLVLPASTIHGGGFRTTPFESEYSTXGSRSSGFNCGGNLRFHLYXATDDASLPAHQTNKYTERCDKTKELSRRYVDSRHMSVLLDHFF 351          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A7S4ELI2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ELI2_9STRA)

HSP 1 Score: 171 bits (433), Expect = 1.130e-46
Identity = 112/301 (37.21%), Postives = 150/301 (49.83%), Query Frame = 1
Query:  148 TSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQE--GKDRFFIAFFPLTDEGMFLQLWPNRC--------------------KTETTSGFIVYIPQGKLLMVPSDTVHGGGFKA---------------------------GENGILRFHLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFF 903
            +SI+V+D      +  L  FDG+L  VSS L++E+R   P     + V DFN+NL Y MQ  RGL          +   G  H++       +   E AL +         EY GSF+ T ++IPQP HVD+ WE+L++  G     +AFFPLT+EGMFLQ+WP+                      K     G IV+IP GKLL+VP+ T+HGGGF+                            G  G LRFHLY+A+  ASLP   TNKYTE  D TKE+S R +DS  ++ L+  FF
Sbjct:  107 SSIVVLDD-EAEKKDWLNRFDGQLSVVSSELLQELRKHAPGLNTMSTVADFNDNLFYHMQQERGL----------EHFPGIGHDT-------LRELEGALLQQAN------EYLGSFLTTKSSIPQPAHVDYPWEVLEKHAGDQSLKLAFFPLTEEGMFLQIWPHAAGSGSGTMPGSSQAAADRSTEKLHAVEGEIVFIPYGKLLIVPASTIHGGGFRTTPLPMPLGREEIDAAAXXXXXXXXXXTGSGGNLRFHLYIATKDASLPAHQTNKYTERFDKTKELSRRYVDSKHMQILLESFF 383          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A7S2LQ58_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LQ58_9STRA)

HSP 1 Score: 163 bits (413), Expect = 7.770e-45
Identity = 95/246 (38.62%), Postives = 146/246 (59.35%), Query Frame = 1
Query:   70 DAILPQNAVFDGHSRSELRHFYDQLRTSIIVMDPCST---RAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTETTSG-------FIVYIPQGKLLMVPSDTVHGGGFKAGENGILRFHLYVA 777
            DA L +  + D  + +++ +  D      I+++  ST     Q LL  + G L D  S L+E +R+  P  L AA+VGD+NENL Y MQD    +S I        ++G  H+    L +++  FE+++  ++  ++  + Y+GSFM+T++TI QP HVD+ + +L++   + F+AFFPLT EG +LQLW    K E   G        +V+IP GK+L++PSDT+HGGGFK G +G LRFHLY+A
Sbjct:   35 DANLTKKHINDNDTINKVHNTPD------IIIELNSTSCPNVQSLLSAYKGHLVDAGSCLLESLRNTAPQQL-AARVGDYNENLFYEMQDNDKDISGI--------IDGVEHDDQ-QLQEDIDAFESSICSSLQHTN--LTYRGSFMRTESTIYQPAHVDYDYPILEQYGTKLFLAFFPLTKEGAYLQLWQEPSKEENDGGGDEPIEGTVVFIPYGKMLIMPSDTIHGGGFKRGSSGNLRFHLYIA 262          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A1Z5KM92_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM92_FISSO)

HSP 1 Score: 161 bits (408), Expect = 2.280e-43
Identity = 109/324 (33.64%), Postives = 164/324 (50.62%), Query Frame = 1
Query:    4 GKQLFRVLLEKVRSNDEDEPEWDAILPQNAVFDGHSRSELRHFYDQLRTSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTETTSGFIVYIPQGKLLMVPSDTVHGGGFKA---------------------------GEN---GILRFHLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKE 885
            G+ L+ +LL +    D D  +W  +  +  +    ++ +L      +R+ +I+ D    R +++L  ++GK+  V   L EE+    P D   A V DFN+NLSY MQ  RG  +       ++  E            E+A FE  ++E +   S  IE Q SF+KTD T+ QP HVD+ W++L E  D  ++AFFPLT +GM LQLWP       + G +V+IP GK+L+VPSDT+HGGGF+                             EN   G +R+HLY+A+ G SLP    N YT + D  +E+S    ++S + E
Sbjct:   33 GQLLWNLLLNRKIPEDGD-VDWLILKREYPLLSSVTQIKLIELLMVIRSIVILDDSIDDRVEQVLAEYNGKIVVVRRNLTEELYRLSP-DRFHAHVADFNDNLSYCMQTTRGFPANPSMLTADEWEE------------EIALFEKDVKEKL--KSCHIEVQSSFLKTDKTVAQPAHVDYSWKVLSERADELWLAFFPLTSQGMILQLWPPH----GSQGLLVFIPLGKMLLVPSDTIHGGGFRTFPIHDLGTRDESYESESANHTHNDECDKENVYVGNMRYHLYIATHGKSLPKFAQNVYTIKGDKRRELSQVCTNASGVNE 336          
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Match: A0A1Z5KMN6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KMN6_FISSO)

HSP 1 Score: 160 bits (406), Expect = 3.800e-43
Identity = 105/313 (33.55%), Postives = 162/313 (51.76%), Query Frame = 1
Query:    1 VGKQLFRVLLEKVRSNDEDEPEWDAILPQNAVFDGHSRSELRHFYDQLRTSIIVMDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENLSYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLL------QEVARFEAALQEAVGDSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEGMFLQLWPNRCKTETTSGFIVYIPQGKLLMVPSDTVHGGGF------KAGENGI-----------------LRFHLYVASGGASLPITHTNKYTEEDDPTKEMS 852
            VG+ L+ +LL++  S   +   W  +  +  +    +  +L      +R+ +I+ +    R +++L  ++G++ DV   L +E+    P    A  V DFN+NLSY MQ  RG                    ++P +L      QE+ARFE A++E +   S  I+ Q SF++T  T+ QP HVD+ W++L E  D  ++AFFPLT +GM LQLWP       + G +V+IP GK+L+VPSDT+HGGGF      K G +G                  +R+HLY+A+ G SLP    N YT + D  +E+S
Sbjct:   32 VGQLLWNLLLDRKLSTSGN-VNWLILKREYPLLSSVTPQKLTELLMVIRSIVILDEEIDDRVEQVLADYNGEVLDVRRNLTDELYRLSPARFHA-HVADFNDNLSYCMQTTRGF------------------PANPKMLTADEWEQEIARFEKAVKEKL--DSCHIQVQSSFLRTVKTVAQPAHVDYSWKVLSERADELWLAFFPLTTQGMILQLWPPH----RSQGLLVFIPLGKMLLVPSDTIHGGGFRTFSIQKQGSHGAQITQTDECDKENVYVGNMRYHLYIATHGKSLPKFAQNVYTVKGDKRRELS 318          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig854.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A7R9ZKT3_9STRA3.120e-5943.25Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B8C3F2_THAPS4.700e-5839.74Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S6F9_THAOC1.320e-5340.07Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2IH65_9STRA8.740e-5239.42Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S4T7Z9_9STRA1.860e-5036.11Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448YY94_9STRA2.000e-4736.33Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4ELI2_9STRA1.130e-4637.21Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S2LQ58_9STRA7.770e-4538.62Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A1Z5KM92_FISSO2.280e-4333.64Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KMN6_FISSO3.800e-4333.55Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig854contigH-akashiwo_Contig854:129880..130855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0S6F9
Model size976
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.93e-55
EggNOG OGs293C7@1|root,2RA92@2759|Eukaryota,2XDDC@2836|Bacillariophyta
Cds size753
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388013.300096-UTR-H-akashiwo_Contig854:129879..1300411681388013.300096-UTR-H-akashiwo_Contig854:129879..130041Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig854 129880..130041 +
1681388013.3207824-UTR-H-akashiwo_Contig854:130794..1308551681388013.3207824-UTR-H-akashiwo_Contig854:130794..130855Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig854 130795..130855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388013.3106914-CDS-H-akashiwo_Contig854:130041..1307941681388013.3106914-CDS-H-akashiwo_Contig854:130041..130794Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig854 130042..130794 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig854.3.1prot_H-akashiwo_Contig854.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig854 130042..130794 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig854.3.1

>prot_H-akashiwo_Contig854.3.1 ID=prot_H-akashiwo_Contig854.3.1|Name=mRNA_H-akashiwo_Contig854.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=251bp
MDPCSTRAQRLLETFDGKLCDVSSVLIEEMRDDKPMDLGAAKVGDFNENL
SYAMQDGRGLLSVIQQARMNQGMEGAVHESSPHLLQEVARFEAALQEAVG
DSSGIIEYQGSFMKTDTTIPQPPHVDFKWELLQEGKDRFFIAFFPLTDEG
MFLQLWPNRCKTETTSGFIVYIPQGKLLMVPSDTVHGGGFKAGENGILRF
HLYVASGGASLPITHTNKYTEEDDPTKEMSDRLIDSSCLKELVGPFFDNY
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mRNA from alignment at H-akashiwo_Contig854:129880..130855+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig854.3.1 ID=mRNA_H-akashiwo_Contig854.3.1|Name=mRNA_H-akashiwo_Contig854.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=976bp|location=Sequence derived from alignment at H-akashiwo_Contig854:129880..130855+ (Heterosigma akashiwo CCMP452)
GTCGGTAAGCAACTCTTTCGTGTTCTCTTAGAGAAGGTAAGGTCCAACGA CGAAGATGAACCAGAATGGGATGCTATCTTGCCTCAAAATGCTGTTTTTG ACGGTCATTCAAGGTCCGAGCTTCGGCACTTCTATGATCAACTGAGAACA AGCATCATTGTCATGGATCCTTGCTCTACGAGGGCCCAAAGACTTCTTGA AACTTTCGATGGAAAGTTGTGTGACGTCAGTTCTGTGCTAATTGAAGAGA TGCGTGATGACAAACCCATGGATCTTGGGGCGGCCAAAGTAGGCGATTTC AACGAAAACCTATCGTATGCCATGCAAGATGGACGTGGCTTGCTGAGCGT TATCCAACAAGCACGTATGAATCAAGGCATGGAAGGAGCGGTTCATGAAT CAAGCCCACATCTTCTGCAAGAAGTCGCACGCTTTGAAGCAGCCTTGCAA GAAGCTGTGGGTGATAGTTCGGGGATAATTGAGTACCAAGGGTCGTTCAT GAAAACCGACACAACTATCCCTCAACCACCCCATGTTGATTTTAAATGGG AGCTTCTTCAAGAGGGAAAGGATCGGTTTTTCATTGCATTTTTCCCACTT ACTGATGAGGGAATGTTTCTCCAACTGTGGCCGAACCGCTGTAAAACAGA GACTACAAGTGGCTTTATAGTCTACATCCCTCAAGGTAAATTGCTGATGG TTCCCAGTGATACAGTACATGGCGGTGGTTTCAAGGCTGGTGAGAACGGA ATTTTGCGTTTTCATTTGTATGTTGCCTCAGGAGGGGCATCGCTTCCAAT TACACACACAAATAAGTATACTGAAGAGGATGATCCAACGAAGGAGATGA GCGATCGCCTGATAGATTCCAGTTGTCTCAAGGAACTTGTGGGGCCATTC TTTGACAATTATTGATGTTTTGCTTGTTTGTTTTATATGTTGCTTTTTTG ATGATGATGTTAAATTGTCAACTTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig854:129880..130855+

>mRNA_H-akashiwo_Contig854.3.1 ID=mRNA_H-akashiwo_Contig854.3.1|Name=mRNA_H-akashiwo_Contig854.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=753bp|location=Sequence derived from alignment at H-akashiwo_Contig854:129880..130855+ (Heterosigma akashiwo CCMP452)
ATGGATCCTTGCTCTACGAGGGCCCAAAGACTTCTTGAAACTTTCGATGG
AAAGTTGTGTGACGTCAGTTCTGTGCTAATTGAAGAGATGCGTGATGACA
AACCCATGGATCTTGGGGCGGCCAAAGTAGGCGATTTCAACGAAAACCTA
TCGTATGCCATGCAAGATGGACGTGGCTTGCTGAGCGTTATCCAACAAGC
ACGTATGAATCAAGGCATGGAAGGAGCGGTTCATGAATCAAGCCCACATC
TTCTGCAAGAAGTCGCACGCTTTGAAGCAGCCTTGCAAGAAGCTGTGGGT
GATAGTTCGGGGATAATTGAGTACCAAGGGTCGTTCATGAAAACCGACAC
AACTATCCCTCAACCACCCCATGTTGATTTTAAATGGGAGCTTCTTCAAG
AGGGAAAGGATCGGTTTTTCATTGCATTTTTCCCACTTACTGATGAGGGA
ATGTTTCTCCAACTGTGGCCGAACCGCTGTAAAACAGAGACTACAAGTGG
CTTTATAGTCTACATCCCTCAAGGTAAATTGCTGATGGTTCCCAGTGATA
CAGTACATGGCGGTGGTTTCAAGGCTGGTGAGAACGGAATTTTGCGTTTT
CATTTGTATGTTGCCTCAGGAGGGGCATCGCTTCCAATTACACACACAAA
TAAGTATACTGAAGAGGATGATCCAACGAAGGAGATGAGCGATCGCCTGA
TAGATTCCAGTTGTCTCAAGGAACTTGTGGGGCCATTCTTTGACAATTAT
TGA
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