mRNA_H-akashiwo_Contig854.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig854.2.1
Unique NamemRNA_H-akashiwo_Contig854.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A833SYU5_PHYIN (PHD-zinc-finger like domain n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833SYU5_PHYIN)

HSP 1 Score: 151 bits (382), Expect = 9.450e-40
Identity = 73/150 (48.67%), Postives = 93/150 (62.00%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSASAARE------RCCVCGRPGGAFKRTVDGAWCHVACALWVPELRI---LDDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C VC +S SY+D+ I+FCD CNV VHQFCYG+ ++P   + W+C VC    A    E      RC +C   GGA+KRT  G W HV C LW+PE R+    DD+ + G + S LDP+R+TL C  C  +KG   IQCAH+RC AAFH  C
Sbjct: 1273 CAVCLESESYDDDPIVFCDGCNVAVHQFCYGIRSVPH--DKWFCDVCTDRRAGGVNEPKPSQPRCQLCPHRGGAYKRTTCGQWVHVQCFLWIPEFRVEQGRDDMLVLG-NLSRLDPDRKTLDCCLCHSRKGNGIIQCAHKRCLAAFHVSC 1419          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A7R9SZL6_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9SZL6_9CHLO)

HSP 1 Score: 148 bits (373), Expect = 1.490e-38
Identity = 68/143 (47.55%), Postives = 91/143 (63.64%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRILDDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPCLL 429
            C VC D  SY+DN ILFCDKC++ VHQ CYG+  +P+ D  W C+ C+S  A+   + C +C   GGA K TVDG W H+ CA W+PEL I +  ++E I+ + L P+R  L C+ C++   GACIQCA+  C   FHP C L
Sbjct:  206 CGVCFDGDSYDDNQILFCDKCDIAVHQLCYGIRKIPQGD--WICRSCSSRGAA---KTCFLCTERGGALKPTVDGRWAHLFCAQWIPELFIQNVDSMEPINAAHLLPDRTNLTCVICREHGAGACIQCAYGNCSVPFHPMCAL 343          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A090M8L3_OSTTA (Zinc finger, PHD-finger n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090M8L3_OSTTA)

HSP 1 Score: 147 bits (371), Expect = 2.770e-38
Identity = 70/143 (48.95%), Postives = 85/143 (59.44%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRILDDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPCLL 429
            C VC D  SY+DN ILFCDKC++ VHQ CYG+  +P  D  W C  C S     A+  CC+C   GGA K T DG W H+ CA W+PEL I +  A+E ID   L  +R+ L C  CK+   GACIQCA+  C   FHP C L
Sbjct:  207 CGVCFDGDSYDDNQILFCDKCDIAVHQVCYGIHKIPNGD--WNCTACRS----RAKRTCCLCSVRGGALKPTTDGRWAHLFCAQWIPELFIANIEAMEPIDVGHLLQDRQGLTCSICKETGVGACIQCAYGACSVPFHPMCAL 343          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A329SCB6_9STRA (Fanconi anemia group M protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCB6_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.260e-38
Identity = 71/151 (47.02%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSASA-------ARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRIL---DDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C++C +S SY+D+ I+FCD CNV VHQFCYG+  +P   + W+C VC    AS        ++ RC +C   GGAFKRT  G W HV C LW+PE R+    +D+ + G   + LDP+R+TL C  C  +KG   IQCAH+RC AAFH  C
Sbjct: 1313 CSICLESESYDDDPIVFCDGCNVAVHQFCYGIRVVPS--DKWFCDVCTEVHASGVNGVNPPSQPRCQLCPHRGGAFKRTTCGQWVHVQCFLWIPEFRVEQGDNDMLVLGT-LNRLDPDRKTLDCSLCHSQKGNGVIQCAHKRCLAAFHVSC 1460          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A8J5XXP2_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XXP2_DIALT)

HSP 1 Score: 136 bits (343), Expect = 9.920e-38
Identity = 65/141 (46.10%), Postives = 78/141 (55.32%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRILDDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C +CGD  S EDN ILFCD CN+ VHQ CYG   +   D  WYC  C     +   + CC+C   GGA KRT D  W HV CALW+P +   D  + + ID S +D  R  L C  C  +KG ACIQC   +C  AFH  C
Sbjct:   34 CTICGDGESEEDNVILFCDGCNLAVHQVCYGGGAVAIPDGPWYCDRCDPARWAGPAD-CCLCPANGGAMKRTTDWRWAHVVCALWLPNVSFADPESRDAIDLSGMDERRFGLTCSLCGQQKG-ACIQCKERKCMRAFHVTC 172          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: W2QKT9_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2QKT9_PHYPN)

HSP 1 Score: 144 bits (362), Expect = 4.650e-37
Identity = 69/149 (46.31%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCAS-----GSASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRIL---DDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C+VC +S SY+D+ I+FCD CNV VHQFCYG+  +P+  + W+C VC         A   + RC +C   GGA+KRT  G W HV C LW+PE R+    +D+ + G + + LDP+R+TL C  C   KG   IQCAH+RC  AFH  C
Sbjct: 1225 CSVCLESESYDDDPIVFCDGCNVAVHQFCYGIRVVPK--DKWFCDVCTETRAGVNEAKPNQPRCQLCPHRGGAYKRTTCGQWIHVQCFLWIPEFRVEQGDNDMLVLG-ELNRLDPDRKTLDCSLCHSTKGNGIIQCAHKRCLTAFHVSC 1370          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A6A4EXG4_9STRA (Fanconi anemia group M protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4EXG4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.660e-37
Identity = 72/149 (48.32%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSA-----SAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRIL---DDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C+VC +S SY+D+ I+FCD CN+ VHQFCYG+  +P   + W+C VC    A     S  R RC +C   GGAFKRT  G W HV C LW+PE R+    DD+   G   ++LDP+R TL C  C  K+G   IQCAH+RC  AFH  C
Sbjct: 1297 CSVCLESESYDDDPIVFCDGCNLAVHQFCYGIRVVPS--DKWFCDVCTEARADVKKMSEIRPRCQLCPHHGGAFKRTGCGKWVHVQCFLWIPEFRVEQGEDDMLGFGA-LNSLDPDRATLDCSLCHSKQGKGIIQCAHKRCLTAFHVSC 1442          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: W0TT61_9SAUR (Bromodomain and PHD finger containing, 1 (Fragment) n=18 Tax=Anolis TaxID=28376 RepID=W0TT61_9SAUR)

HSP 1 Score: 133 bits (335), Expect = 4.720e-37
Identity = 64/142 (45.07%), Postives = 79/142 (55.63%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASGSASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRILDDLALEGIDT-STLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C +C D      N ILFCD CN+ VHQ CYG+  +PE    W C+ C    + A    C +C   GGAFK+T DG W HV CALW+PE+   + + LE ID+   + P R  L C  CK +  GACIQC    CY AFH  C
Sbjct:   26 CCICNDGECQNSNVILFCDMCNLAVHQECYGVPYIPEGQ--WLCRRCLQSPSRAVD--CALCPNKGGAFKQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQRGSGACIQCHKANCYTAFHVTC 163          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A0P1B396_PLAHL (Dead deah box rna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B396_PLAHL)

HSP 1 Score: 143 bits (360), Expect = 8.630e-37
Identity = 69/149 (46.31%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCAS-----GSASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRIL---DDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C +C +S SY+D+ I+FCD CNV VHQ+CYG+  LP   + W+C VC       G A++++  C +C   GGA+KRT    W HV C LW+PEL +    DDL   G D  +LDP+R+TL C  C  +KG   IQCAH +C  AFH  C
Sbjct: 1265 CAICLESESYDDDPIVFCDGCNVAVHQYCYGIHTLPS--DKWFCAVCIEAISNDGRAASSQPHCLLCPHRGGAYKRTACRQWVHVQCFLWIPELSVEQKGDDLLALG-DIKSLDPDRKTLDCSLCHSQKGYGIIQCAHNQCLTAFHVSC 1410          
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Match: A0A7S0LKH8_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LKH8_9EUKA)

HSP 1 Score: 135 bits (339), Expect = 1.370e-36
Identity = 65/146 (44.52%), Postives = 80/146 (54.79%), Query Frame = 1
Query:    1 CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLS--NLPEADEDWYCQVCASGSASAAR---ERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRILDDLALEGIDTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPC 423
            C VC +    +DN I+FCD C++ VHQ CYG    N+P+ D  WYC VC        R   + C +C   GGA KRT D  W H+ CALWVP +  LD   L+ I    L+ +R  L C+ C  K GG CIQC   RC  AFHP C
Sbjct:   72 CAVCNEGDWEDDNAIIFCDSCDLAVHQVCYGAGARNIPKGDVPWYCDVCRHTGKRGDRRCEQECIMCPERGGALKRTSDSRWAHITCALWVPGVSFLDPEGLDVIHPFGLNEKRMQLTCVICNKKMGG-CIQCKAPRCLTAFHPTC 216          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig854.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A833SYU5_PHYIN9.450e-4048.67PHD-zinc-finger like domain n=1 Tax=Phytophthora i... [more]
A0A7R9SZL6_9CHLO1.490e-3847.55Hypothetical protein n=2 Tax=Ostreococcus sp. 'luc... [more]
A0A090M8L3_OSTTA2.770e-3848.95Zinc finger, PHD-finger n=2 Tax=Ostreococcus tauri... [more]
A0A329SCB6_9STRA7.260e-3847.02Fanconi anemia group M protein n=2 Tax=Phytophthor... [more]
A0A8J5XXP2_DIALT9.920e-3846.10Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
W2QKT9_PHYPN4.650e-3746.31Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A6A4EXG4_9STRA4.660e-3748.32Fanconi anemia group M protein n=6 Tax=Phytophthor... [more]
W0TT61_9SAUR4.720e-3745.07Bromodomain and PHD finger containing, 1 (Fragment... [more]
A0A0P1B396_PLAHL8.630e-3746.31Dead deah box rna n=1 Tax=Plasmopara halstedii Tax... [more]
A0A7S0LKH8_9EUKA1.370e-3644.52Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig854contigH-akashiwo_Contig854:14903..15331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog242159.ABO97422
PFAMsPHD_2,zf-HC5HC2H_2
Model size429
Max annot lvl3041|Chlorophyta
KEGG koko:K11348
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.72e-44
EggNOG OGsCOG5141@1|root,KOG0955@2759|Eukaryota,380G7@33090|Viridiplantae,34MBI@3041|Chlorophyta
DescriptionPHD-finger
Cds size429
COG categoryS
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388013.2716026-CDS-H-akashiwo_Contig854:14902..153311681388013.2716026-CDS-H-akashiwo_Contig854:14902..15331Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig854 14903..15331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig854.2.1prot_H-akashiwo_Contig854.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig854 14903..15331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig854.2.1

>prot_H-akashiwo_Contig854.2.1 ID=prot_H-akashiwo_Contig854.2.1|Name=mRNA_H-akashiwo_Contig854.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=143bp
CNVCGDSVSYEDNCILFCDKCNVPVHQFCYGLSNLPEADEDWYCQVCASG
SASAARERCCVCGRPGGAFKRTVDGAWCHVACALWVPELRILDDLALEGI
DTSTLDPERRTLKCLFCKDKKGGACIQCAHERCYAAFHPPCLL
back to top

mRNA from alignment at H-akashiwo_Contig854:14903..15331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig854.2.1 ID=mRNA_H-akashiwo_Contig854.2.1|Name=mRNA_H-akashiwo_Contig854.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig854:14903..15331+ (Heterosigma akashiwo CCMP452)
TGCAACGTCTGCGGGGACTCCGTCTCATATGAGGACAACTGCATTCTTTT CTGTGACAAGTGCAACGTGCCAGTGCACCAATTTTGTTATGGACTCTCGA ACCTGCCTGAAGCTGACGAGGACTGGTACTGCCAGGTTTGTGCGAGCGGG TCGGCAAGTGCAGCAAGAGAACGCTGCTGCGTCTGTGGCCGACCCGGCGG CGCCTTCAAGAGGACCGTGGACGGCGCTTGGTGCCACGTGGCCTGCGCGC TGTGGGTGCCTGAGCTGAGGATCCTCGACGACCTTGCCCTGGAGGGCATC GACACCTCCACCCTGGACCCGGAGCGCCGGACCCTCAAGTGCCTGTTCTG CAAGGACAAGAAGGGCGGCGCCTGCATCCAGTGCGCCCACGAGCGCTGCT ACGCGGCCTTCCACCCGCCCTGCCTGCTG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig854:14903..15331+

>mRNA_H-akashiwo_Contig854.2.1 ID=mRNA_H-akashiwo_Contig854.2.1|Name=mRNA_H-akashiwo_Contig854.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig854:14903..15331+ (Heterosigma akashiwo CCMP452)
TGCAACGTCTGCGGGGACTCCGTCTCATATGAGGACAACTGCATTCTTTT
CTGTGACAAGTGCAACGTGCCAGTGCACCAATTTTGTTATGGACTCTCGA
ACCTGCCTGAAGCTGACGAGGACTGGTACTGCCAGGTTTGTGCGAGCGGG
TCGGCAAGTGCAGCAAGAGAACGCTGCTGCGTCTGTGGCCGACCCGGCGG
CGCCTTCAAGAGGACCGTGGACGGCGCTTGGTGCCACGTGGCCTGCGCGC
TGTGGGTGCCTGAGCTGAGGATCCTCGACGACCTTGCCCTGGAGGGCATC
GACACCTCCACCCTGGACCCGGAGCGCCGGACCCTCAAGTGCCTGTTCTG
CAAGGACAAGAAGGGCGGCGCCTGCATCCAGTGCGCCCACGAGCGCTGCT
ACGCGGCCTTCCACCCGCCCTGCCTGCTG
back to top