mRNA_H-akashiwo_Contig850.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig850.3.1
Unique NamemRNA_H-akashiwo_Contig850.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig850.3.1 vs. uniprot
Match: A0A7S4D4J0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D4J0_HETAK)

HSP 1 Score: 55.8 bits (133), Expect = 2.480e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:  355 GGAAAKKKGTSVPAFLAQAQLMEAERTGM 441
            GGAAAKKKGTSVPAFLAQAQLMEAERTGM
Sbjct:    1 GGAAAKKKGTSVPAFLAQAQLMEAERTGM 29
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig850.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4D4J0_HETAK2.480e-6100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig850contigH-akashiwo_Contig850:199545..201466 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size441
Hectar predicted targeting categorysignal peptide
Exons6
Cds size414
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig850.3.1prot_H-akashiwo_Contig850.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig850 199572..201466 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388011.6511035-UTR-H-akashiwo_Contig850:199544..1995711681388011.6511035-UTR-H-akashiwo_Contig850:199544..199571Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig850 199545..199571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388011.6638134-CDS-H-akashiwo_Contig850:199571..1996081681388011.6638134-CDS-H-akashiwo_Contig850:199571..199608Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 199572..199608 +
1681388011.6725779-CDS-H-akashiwo_Contig850:199721..1998041681388011.6725779-CDS-H-akashiwo_Contig850:199721..199804Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 199722..199804 +
1681388011.6838584-CDS-H-akashiwo_Contig850:199946..2000001681388011.6838584-CDS-H-akashiwo_Contig850:199946..200000Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 199947..200000 +
1681388011.692408-CDS-H-akashiwo_Contig850:200226..2003241681388011.692408-CDS-H-akashiwo_Contig850:200226..200324Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 200227..200324 +
1681388011.7025044-CDS-H-akashiwo_Contig850:200847..2009621681388011.7025044-CDS-H-akashiwo_Contig850:200847..200962Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 200848..200962 +
1681388011.7132113-CDS-H-akashiwo_Contig850:201439..2014661681388011.7132113-CDS-H-akashiwo_Contig850:201439..201466Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 201440..201466 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig850.3.1

>prot_H-akashiwo_Contig850.3.1 ID=prot_H-akashiwo_Contig850.3.1|Name=mRNA_H-akashiwo_Contig850.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=138bp
MKESSRFNAVAAVVLLMLEASHGFQSHTLLSRSRNAANPQALLRSQASPD
AEFKVHPQSAQELLALLEKRQEYGLPLCKEDIEEYTSVLDVLFRPVVKGT
PLPPLGAPAGGAAAKKKGTSVPAFLAQAQLMEAERTGM
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mRNA from alignment at H-akashiwo_Contig850:199545..201466+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig850.3.1 ID=mRNA_H-akashiwo_Contig850.3.1|Name=mRNA_H-akashiwo_Contig850.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1922bp|location=Sequence derived from alignment at H-akashiwo_Contig850:199545..201466+ (Heterosigma akashiwo CCMP452)
GGTTTCAGCTTTACGAGCCAGACAAAAATGAAAGAGTCAAGCCGCTTCAA
TGCTGTTGCTGCAGGTTGTCTGCTTTGCACTGAAAAAAAAAAAATGATAA
AGAAATATAGCAATCAAGTACACGTTCAACCTGTTCTCAATTATATTTTG
TATTTTCCCTTCCCAAATTTTGGCCAGTGGTGCTTCTGATGCTAGAAGCT
TCCCACGGTTTCCAGTCCCATACATTGCTTTCTCGTTCAAGAAATGCCGC
CAACCCTCAGGTACTTTTGCAGGATCATCCCACCCTTCCTCCCTCTCCCA
AGCATGTTTCTTCTGGGTTTGGCCATGTGCAGTCAAGCACCCCGAATCCA
TCACCATGAACGTACACGTCCTTCAATTATGGAAAATTTCTTGCCTTTAT
AGGCTCTCCTCCGGTCCCAGGCATCACCTGATGCTGAGTTCAAGGTGCAT
CCGCAGGTGAGGCGCACGTTTTCATCACTCATACAACAATACAGCTCACC
ACCCGCGCTTGCGTGATCTGCTTGGCAGAGTGGGAACTTAACTTTTTGAA
AGCGAAGTCGTTACTGCCTAAATTTGGATTTTTAAAGATATTGATTCTGA
TCCCCTAGCATTTGCCCACATTATGTTGCACAGCCCTTGAGGATCCCCCC
CCCTCCCCCCTCCATGCAACCGCCGCCCACAGTCCGCGCAGGAGCTGCTG
GCGCTGCTGGAGAAGCGGCAGGAGTACGGGCTGCCCCTCTGCAAGGAGGA
CATCGAGGAGTACACCTCCGTCCTCGACGTGTGAGCTGCCGGAACTAGCA
CATGCGGTATAGAAGTGATGATTGGACATGTGCCGCGATTGGGCACTACT
TCTTCTGATGATAGCCGCTCATGGAAAAAAGTCTTGAGGAGGTTTTCGGC
ACGCCGTGGCTTTCTCGATATATTCTTCTGTTCCAACAGAGTCAAGTAAG
GGTCTATTTGATTCACGTATGACCCAACCCAGTTGCGCAGCTGTATCTCT
TTGCTATTCTGCATTACACTATGTGGAGAACGATTGATTTGATGATGATT
GATACAGAGAGAACAACTGAAAAAGTAGAAAAATACAAAGAAGACCCAAA
GTATAAGTGATATACATATACTTTCCCCTCGCCCTACAACATTGACTGCT
ACACCCCAAAACCTCCGCATTGGTTGCAATCTAGCCACAGGGTCACTTAC
CTCTCACCGGCTTGACCCCATCTGCGTTTTACACCACAAGTCCAACCCTA
GTCCCCTCCCCGCCCCCCCCTCTGGGGCTTCTGCTGATCCCGGCGGGCGG
CAGGCTGTTCCGGCCGGTGGTGAAGGGCACCCCGCTGCCACCGCTGGGCG
CCCCGGCGGGCGGCGCGGCGGCCAAGAAGAAGGGCACCTCCGTGCCCGCC
TTTCTCGCCCAGGCCCAGGTGCTCGCGGACCCCCATATTGTATAATCTTT
AAACTTTCCTTTGATTGAGGGATGCTGTATGGCCATTTGTACGAAGAAGG
TTGGACCCAAGTCCAGAACTGTAGTTCCGTTGTGTTTTAAGTCTATGCTG
TGCCCCTCGTTTCTATCTATAGTGTCAAATACCAAGCACAACCTCAGGAG
AAAAAGAGGGGAAAAGGGGGGTGCTGGTGCTGAAGTGGGAGGGTTTGTTT
ACGGTGCAACAGTGCTTTGGAGTGGTTGGCTGGCAGCTGTGAGGGAAAGT
TTTTTGAAAGTGCAATGGCGTTTTGGCTTACTTTACTTGTGGGGCTTTGT
TTTCAACCTGCTCTGCACCAACACCCTAATTCACGGCATCTGTTCATTGC
ATCCATTCCACAGAACAACCCTGATAATCACACTCCCATCCTTCTTCTGC
ATGTGTGCCCTCCTCGCCGGCCGCCCCTCTTCTCCCCGGGGCTAGTTGAT
GGAGGCTGAGCGCACAGGCATG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig850:199545..201466+

>mRNA_H-akashiwo_Contig850.3.1 ID=mRNA_H-akashiwo_Contig850.3.1|Name=mRNA_H-akashiwo_Contig850.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=414bp|location=Sequence derived from alignment at H-akashiwo_Contig850:199545..201466+ (Heterosigma akashiwo CCMP452)
ATGAAAGAGTCAAGCCGCTTCAATGCTGTTGCTGCAGTGGTGCTTCTGAT
GCTAGAAGCTTCCCACGGTTTCCAGTCCCATACATTGCTTTCTCGTTCAA
GAAATGCCGCCAACCCTCAGGCTCTCCTCCGGTCCCAGGCATCACCTGAT
GCTGAGTTCAAGGTGCATCCGCAGTCCGCGCAGGAGCTGCTGGCGCTGCT
GGAGAAGCGGCAGGAGTACGGGCTGCCCCTCTGCAAGGAGGACATCGAGG
AGTACACCTCCGTCCTCGACGTGCTGTTCCGGCCGGTGGTGAAGGGCACC
CCGCTGCCACCGCTGGGCGCCCCGGCGGGCGGCGCGGCGGCCAAGAAGAA
GGGCACCTCCGTGCCCGCCTTTCTCGCCCAGGCCCAGTTGATGGAGGCTG
AGCGCACAGGCATG
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