mRNA_H-akashiwo_Contig850.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig850.2.1
Unique NamemRNA_H-akashiwo_Contig850.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: A0A6H5JFE7_9PHAE (J domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.780e-10
Identity = 26/49 (53.06%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:   10 LKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIYS 156
            L+ALW +  ++++ TV++AC+M+L+DP +PPS+LK RAEAL+RLG+I++
Sbjct:  493 LEALWRVHRVDVELTVQRACKMVLRDPRMPPSMLKKRAEALMRLGRIFT 541
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: A0A1J6J341_NICAT (Chaperone protein dnaj 10 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1J6J341_NICAT)

HSP 1 Score: 55.5 bits (132), Expect = 1.870e-7
Identity = 20/51 (39.22%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 EVLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIY 153
            ++++K+LW +++++I+ T+ + C+ +LK+PNVP  VL++RA A+ +LG I+
Sbjct:  260 DIMIKSLWQINVVDIELTLSRVCQAVLKEPNVPRDVLRLRARAMKKLGTIF 310
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: A0A5N6QNS9_9ROSI (J domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6QNS9_9ROSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.830e-7
Identity = 21/50 (42.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:    4 VLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIY 153
            V+L +LW +++++I+ T+ + C+ +LKDP+VP  VL++RA AL +LG ++
Sbjct:  263 VMLNSLWQINVVDIESTLSRVCQGVLKDPSVPKDVLRLRANALKKLGTVF 312
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: A0A6P4B2K7_ZIZJJ (chaperone protein dnaJ 10-like n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4B2K7_ZIZJJ)

HSP 1 Score: 51.6 bits (122), Expect = 4.370e-6
Identity = 20/51 (39.22%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 EVLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIY 153
            + +L +LW +++++I+ T+   C+ +L+DPN    VLK+RA+AL +LG I+
Sbjct:  262 DAMLNSLWQINVVDIESTLSHVCQAVLRDPNESKEVLKLRAQALKKLGTIF 312
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: UPI0020241749 (chaperone protein dnaJ 10 isoform X1 n=1 Tax=Ziziphus jujuba var. spinosa TaxID=714518 RepID=UPI0020241749)

HSP 1 Score: 51.6 bits (122), Expect = 4.420e-6
Identity = 20/51 (39.22%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 EVLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIY 153
            + +L +LW +++++I+ T+   C+ +L+DPN    VLK+RA+AL +LG I+
Sbjct:  300 DAMLNSLWQINVVDIESTLSHVCQAVLRDPNESKEVLKLRAQALKKLGTIF 350
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: A0A6P6VSY8_COFAR (chaperone protein dnaJ 10-like n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6VSY8_COFAR)

HSP 1 Score: 50.1 bits (118), Expect = 1.540e-5
Identity = 20/51 (39.22%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 EVLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIY 153
            E +  +LW L++++I+ T+ + C+ +L+DP+V   VLK+RA A+ +LG I+
Sbjct:  262 EEMFNSLWQLNVVDIEMTLSRVCQAVLRDPSVSKDVLKLRANAMKKLGTIF 312
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BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Match: L0AW09_THEEQ (DNAj/HSP40, putative n=1 Tax=Theileria equi strain WA TaxID=1537102 RepID=L0AW09_THEEQ)

HSP 1 Score: 48.1 bits (113), Expect = 7.540e-5
Identity = 21/55 (38.18%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    4 VLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQIYSEIDR 168
            ++L A+ ++ +++++ TVR AC+ LLKD +V  +  + RAEALI +G I++E+ +
Sbjct:  480 IILDAMLNICLMDVQNTVRAACKRLLKDMSVDATWRQRRAEALIEMGAIFTEVAK 534
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig850.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JFE7_9PHAE3.780e-1053.06J domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
A0A1J6J341_NICAT1.870e-739.22Chaperone protein dnaj 10 n=2 Tax=Nicotiana TaxID=... [more]
A0A5N6QNS9_9ROSI4.830e-742.00J domain-containing protein n=1 Tax=Carpinus fangi... [more]
A0A6P4B2K7_ZIZJJ4.370e-639.22chaperone protein dnaJ 10-like n=2 Tax=Ziziphus ju... [more]
UPI00202417494.420e-639.22chaperone protein dnaJ 10 isoform X1 n=1 Tax=Zizip... [more]
A0A6P6VSY8_COFAR1.540e-539.22chaperone protein dnaJ 10-like n=4 Tax=Coffea TaxI... [more]
L0AW09_THEEQ7.540e-538.18DNAj/HSP40, putative n=1 Tax=Theileria equi strain... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig850contigH-akashiwo_Contig850:190655..191203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4096.XP_009802822.1
PFAMsDnaJ,DnaJ-X
Model size182
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.07e-08
EggNOG OGsCOG2214@1|root,KOG0691@2759|Eukaryota,37NRP@33090|Viridiplantae,3GA6Y@35493|Streptophyta,44D0K@71274|asterids
DescriptionChaperone protein DNAj
Cds size180
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388012.0185592-CDS-H-akashiwo_Contig850:190656..1907521681388012.0185592-CDS-H-akashiwo_Contig850:190656..190752Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 190657..190752 -
1681388012.0283659-CDS-H-akashiwo_Contig850:191119..1912031681388012.0283659-CDS-H-akashiwo_Contig850:191119..191203Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 191120..191203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig850.2.1prot_H-akashiwo_Contig850.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig850 190657..191203 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig850.2.1

>prot_H-akashiwo_Contig850.2.1 ID=prot_H-akashiwo_Contig850.2.1|Name=mRNA_H-akashiwo_Contig850.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
EVLLKALWHLSIINIKKTVRQACRMLLKDPNVPPSVLKMRAEALIRLGQI
YSEIDRYVPI
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mRNA from alignment at H-akashiwo_Contig850:190655..191203-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig850.2.1 ID=mRNA_H-akashiwo_Contig850.2.1|Name=mRNA_H-akashiwo_Contig850.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=549bp|location=Sequence derived from alignment at H-akashiwo_Contig850:190655..191203- (Heterosigma akashiwo CCMP452)
GAAGTACTGTTGAAAGCACTTTGGCATCTGAGTATCATCAATATCAAAAA
GACAGTGAGGCAAGCTTGCCGAATGCTTTTAAAGGTAACGTTATTTTGGA
GGATGTATCTGTACAATAAACGCGCATCGTGTTCTGGTGTGTGTGTGTGT
GTGTTTTAGTGACAGTCGTTCGTCCGCATGATTTCATTACGTCCTAGAAA
ATATTTTAAAAGGGCAAAGTTCAACCGAAATGCACCAGATCCAATGATGA
CACATAAAAATCTTTGTGGAACAACACTCCAACACGTCTAATAAGATTGT
TTCTGATTTATTCTAGTATTCCTGGCATCTCAAAAATGACATAGAATTTT
AAGAAGTATTACTAGTATTACCATCATACGTCTAGTAATTTAATAATTTT
ACCGCCATTGCCTCATCTCCACCCCGACATTTTGCCTTTATTATATAATA
GGATCCTAATGTACCTCCATCTGTGCTCAAGATGAGGGCAGAAGCTTTGA
TAAGATTAGGCCAGATTTATTCTGAAATAGACAGATATGTACCAATTTA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig850:190655..191203-

>mRNA_H-akashiwo_Contig850.2.1 ID=mRNA_H-akashiwo_Contig850.2.1|Name=mRNA_H-akashiwo_Contig850.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig850:190655..191203- (Heterosigma akashiwo CCMP452)
GAAGTACTGTTGAAAGCACTTTGGCATCTGAGTATCATCAATATCAAAAA
GACAGTGAGGCAAGCTTGCCGAATGCTTTTAAAGGATCCTAATGTACCTC
CATCTGTGCTCAAGATGAGGGCAGAAGCTTTGATAAGATTAGGCCAGATT
TATTCTGAAATAGACAGATATGTACCAATT
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