mRNA_H-akashiwo_Contig850.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig850.14.1
Unique NamemRNA_H-akashiwo_Contig850.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A6H5KA98_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA98_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.600e-26
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILV 202
            GQKQRVAIARALIR+PEVLLLDEPTSALD +SE  VQDALD AG+GRTV+L+AHR+AT++ ADRI+V
Sbjct:  197 GQKQRVAIARALIRDPEVLLLDEPTSALDVESERLVQDALDTAGKGRTVILIAHRLATIQRADRIVV 263
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BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A068YA11_ECHMU (ATP binding cassette subfamily B MDR TAP n=3 Tax=Echinococcus TaxID=6209 RepID=A0A068YA11_ECHMU)

HSP 1 Score: 107 bits (268), Expect = 1.050e-25
Identity = 55/68 (80.88%), Postives = 61/68 (89.71%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARAL+RNP +LLLDE TSALD  SE AVQDALDRAG GRTV++VAHR+ TVRNADRILVV
Sbjct:  468 GQKQRLAIARALLRNPRILLLDEATSALDTHSERAVQDALDRAGVGRTVIMVAHRLTTVRNADRILVV 535
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BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A7D9L9U7_PARCT (Multidrug resistance 1-like isoform X1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L9U7_PARCT)

HSP 1 Score: 107 bits (266), Expect = 1.060e-25
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARAL+RNP++LLLDE TSALD +SEA VQDALDRAGEGRT +++AHR++T+RNAD I+VV
Sbjct:  320 GQKQRIAIARALVRNPKILLLDEATSALDSESEAVVQDALDRAGEGRTTIVIAHRLSTIRNADIIVVV 387
[Close]
BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: K3X5V4_GLOUD (ABC transporter domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5V4_GLOUD)

HSP 1 Score: 100 bits (250), Expect = 2.100e-25
Identity = 49/68 (72.06%), Postives = 61/68 (89.71%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQRVAIARALI+ P++L+LDE TSALDP+SE  VQDA+DRA  GRTV+LVAHR++T+R+ADRI V+
Sbjct:   76 GQKQRVAIARALIKEPKILILDEATSALDPESEKLVQDAVDRAKAGRTVILVAHRLSTIRSADRIAVI 143
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BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: D7G5Q1_ECTSI (ATP-binding cassette, sub-family B, member 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q1_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 3.560e-25
Identity = 53/67 (79.10%), Postives = 62/67 (92.54%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILV 202
            GQKQRVAIARALIR+PEVLLLDEPTSALD +SE  VQDALD AG+GRTV+L+AHR+AT++ ADRI+V
Sbjct:  566 GQKQRVAIARALIRDPEVLLLDEPTSALDVESERLVQDALDTAGKGRTVILIAHRLATIQRADRIVV 632
[Close]
BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A0R3WRF6_HYDTA (Uncharacterized protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WRF6_HYDTA)

HSP 1 Score: 104 bits (260), Expect = 5.260e-25
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARAL+RNP +LLLDE TSALD  SE AVQDALDRAG GRTV++VAHR+ TVRNAD ILVV
Sbjct:  120 GQKQRLAIARALLRNPRILLLDEATSALDTHSERAVQDALDRAGVGRTVIMVAHRLTTVRNADCILVV 187
[Close]
BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A8E0RYS0_9TREM (Multidrug resistance protein 1 n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RYS0_9TREM)

HSP 1 Score: 97.1 bits (240), Expect = 1.060e-24
Identity = 49/68 (72.06%), Postives = 58/68 (85.29%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARAL+RNP+V+LLDE TSALD  SE  VQ ALDRA  GRTV+++AHR+ TVRNAD ILV+
Sbjct:    4 GQKQRIAIARALVRNPKVMLLDEATSALDTRSERQVQAALDRACSGRTVIMIAHRLTTVRNADCILVI 71
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BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A0A1U485_ENTIV (p-glycoprotein (Fragment) n=1 Tax=Entamoeba invadens IP1 TaxID=370355 RepID=A0A0A1U485_ENTIV)

HSP 1 Score: 97.1 bits (240), Expect = 1.220e-24
Identity = 47/68 (69.12%), Postives = 59/68 (86.76%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARALIRNP++L+LDE TSALD  SE  VQDALD+A  GRT +++AHR++TVRNA +I+VV
Sbjct:   11 GQKQRIAIARALIRNPKILILDEATSALDTASEEIVQDALDKASVGRTTIVIAHRLSTVRNASKIIVV 78
[Close]
BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A5K3EHQ5_MESCO (Uncharacterized protein n=1 Tax=Mesocestoides corti TaxID=53468 RepID=A0A5K3EHQ5_MESCO)

HSP 1 Score: 104 bits (260), Expect = 1.270e-24
Identity = 51/68 (75.00%), Postives = 63/68 (92.65%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARALIRNP+++LLDE TSALD  SE AVQ+ALD+AG+GRTV++VAHR+ TVRNAD+I+VV
Sbjct:  464 GQKQRLAIARALIRNPKIMLLDEATSALDTHSERAVQEALDKAGKGRTVIMVAHRLTTVRNADKIIVV 531
[Close]
BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Match: A0A3P6QP52_TAEAS (Uncharacterized protein n=2 Tax=Taenia asiatica TaxID=60517 RepID=A0A3P6QP52_TAEAS)

HSP 1 Score: 104 bits (260), Expect = 1.280e-24
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 2 
Query:    2 GQKQRVAIARALIRNPEVLLLDEPTSALDPDSEAAVQDALDRAGEGRTVVLVAHRIATVRNADRILVV 205
            GQKQR+AIARAL+RNP +LLLDE TSALD  SE AVQDALDRAG GRTV++VAHR+ TVRNAD ILVV
Sbjct: 1398 GQKQRLAIARALLRNPRILLLDEATSALDTHSERAVQDALDRAGVGRTVIMVAHRLTTVRNADCILVV 1465
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig850.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA98_9PHAE2.600e-2679.10ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A068YA11_ECHMU1.050e-2580.88ATP binding cassette subfamily B MDR TAP n=3 Tax=E... [more]
A0A7D9L9U7_PARCT1.060e-2575.00Multidrug resistance 1-like isoform X1 (Fragment) ... [more]
K3X5V4_GLOUD2.100e-2572.06ABC transporter domain-containing protein n=1 Tax=... [more]
D7G5Q1_ECTSI3.560e-2579.10ATP-binding cassette, sub-family B, member 8 n=1 T... [more]
A0A0R3WRF6_HYDTA5.260e-2579.41Uncharacterized protein n=1 Tax=Hydatigena taeniae... [more]
A0A8E0RYS0_9TREM1.060e-2472.06Multidrug resistance protein 1 n=1 Tax=Fasciolopsi... [more]
A0A0A1U485_ENTIV1.220e-2469.12p-glycoprotein (Fragment) n=1 Tax=Entamoeba invade... [more]
A0A5K3EHQ5_MESCO1.270e-2475.00Uncharacterized protein n=1 Tax=Mesocestoides cort... [more]
A0A3P6QP52_TAEAS1.280e-2479.41Uncharacterized protein n=2 Tax=Taenia asiatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig850contigH-akashiwo_Contig850:452527..455281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons3
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388011.9317825-CDS-H-akashiwo_Contig850:452528..4525991681388011.9317825-CDS-H-akashiwo_Contig850:452528..452599Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 452529..452599 -
1681388011.9408176-CDS-H-akashiwo_Contig850:453202..4532861681388011.9408176-CDS-H-akashiwo_Contig850:453202..453286Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 453203..453286 -
1681388011.9490547-CDS-H-akashiwo_Contig850:455229..4552811681388011.9490547-CDS-H-akashiwo_Contig850:455229..455281Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 455230..455281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig850.14.1prot_H-akashiwo_Contig850.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig850 452529..455281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig850.14.1

>prot_H-akashiwo_Contig850.14.1 ID=prot_H-akashiwo_Contig850.14.1|Name=mRNA_H-akashiwo_Contig850.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=69bp
GPETAGRHRPGADPQPRGAAAGRADLGAGPGQRGRGAGRPGPRRGGTHGG
AGGSPDRHSAERRPHPGCA
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mRNA from alignment at H-akashiwo_Contig850:452527..455281-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig850.14.1 ID=mRNA_H-akashiwo_Contig850.14.1|Name=mRNA_H-akashiwo_Contig850.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2755bp|location=Sequence derived from alignment at H-akashiwo_Contig850:452527..455281- (Heterosigma akashiwo CCMP452)
GGGCCAGAAACAGCGGGTCGCCATCGCCCGGGCGCTGATCCGCAACCCCG
AGGTGGGCTTGCTCAGTGCTCATAGCCGTGTGAAGGGCCAACGGCCAAAC
GCTGTAGGAGTAGCCAAGATCGCTTTCATGTAGATGAACCAACAAGGAAG
TGCTCCTATGAGGTTGCCAGAATTTGGCCATGTGTAAAATCTAGCAGAAA
AGTATGCCACCACTGGGTAGCAGGTGGTGGGCATTGTGTGTACGAATAAA
AAATGTAGATCAGAAATACATTTCATTATGAGTGAATGAAGAGAGAACCC
ACTATACAAGTGGGTGAACAGTTGCAGATCTGGTGGTTCAAGCCTGACCA
GGTGCAGCATTGGCCGTGGAACGTTGATGTGATACAAGAATGACAACAAC
AAACCAAATGTTGGGTTGGTCAGTGGGCTCTTCCAACTGACTTGTATACC
CCAAGTGTGGGAGCGTGGTAATCTTAGCTTGACAATAAAGTGCAAATCAT
TGAGCTGGTCAAGAACACCGGAGCGGAAATGCTCGCAGAAGAACATGATG
TCATTAAGATGTGGAAGAAGAAAAAAAACATTTGAAATAAAGTGAATGAT
GCTTCTGGCCTCCTCAATATGGCTGTTCATGTTTTAAATTCAAGGTTAAG
AGTAAAACTGCTTCTGCTTTTACCCACACCCGTCATGATTCATTATTTTT
TCACTGGTTCTGCGATTTATATGAGCAGTTCTGCACAGCCATTGTCAGGC
CTTGTTACCTTGCCCCTGCTGTTGTATGTCAGCGCAGGTTTTTTGTTCAT
AGTACGCGGTCACGTTTCCATTTATCTTCCGGTCGGCAGCTGAGTCCATG
CAACATCTCCCCACCCATATATTTCAATTCATAAATAGCACGGCGAGCTC
TCCTATCCGATACCCCAGCACCCACCACGCCCGCCACTCTGCGCCCAAAT
AAACGTGCTAGAGGGAGAGTGGGGCTTCCTTTTCCTGAGAAGTTTTAGCT
TTGAGGCTGATCATTGAACGCGGTATTGAACGCGCAAATCAGTTGAAGAT
GGGTGGTAGCAGCAGTGGATGAGTTTTGGGTTATCATTTTCACTACAGCT
TAAAGTGTCGAAAAGAAATATAAAGAAATAAAAAAATAATGGTACCAACC
AGACCAGCCTACCACTGGGGTGGTTGGACCTTAACTCAAAGTCCAGCATA
CTTCTTCATAAAATGGTTCCTTGTGTGTTTTCTGCATTTCCTTGTACATC
GCTTTGGCCAAAACATAATCACAATCTATAGTATAGGTTGCAAGATTGAG
TCGCCCGCCTGTATAGGGTGTACAGTCGTCAGCCTTACTTGCCCCTCACG
TCAATGCCATGGGAATTCAGACAGAGCCCAATCTCTGATAGATATCATGG
AGAGGAATTTCGCAAAAGGAAGGCTGGAGTTGAATGTGCAACCTCATGGC
ACCATACCTAGCACCCAAACCACTGGGCTACTTGTACTTAGAAATCCATT
CACAGTCCGGAATACTCTACAAATAGAACATACTGAATTTCCTTGATATA
CACAAAGAGCAAGATAAGGGGGTATATATTATCAATTATGTCATAATGGT
GTGTTAGAAAGAAATGTGCAATTTTGTTGCCCCTGTACACTCGGCCCTTC
TGTTCTTCTTATCTGTGCTGCCCCTTTTCTTGAATTGATTTCGTCTGCAC
ACATACAAATACAACATGGAGGGACGTCAAAACCATACAACGCACACTTC
TCCCTCCTCCTCCCCGTACCACTTTGCCCGGGGCCGGTGGGCGCCCAACT
CGTAAGATTCTCCTCCTCCCCACGCCGCTTCGACACGGGGGCGGCGGCGG
ACGTCCAACTCCTAAAAACTCCTCCTCCTCCTCCACCTCATGCCGCTTTT
TGGGCCCGGGGCGGAGGGCGTCGACGAACTCGTTGCCCCTCCCCCCCCCC
TCCTCCTCCTCCTCCTCGAACTTGTTGACCCCCCCGGGGTGCCAGGTGCT
GCTGCTGGACGAGCCGACCTCGGCGCTGGACCCGGACAGCGAGGCCGCGG
TGCAGGACGCCCTGGACCGCGCCGGGGAGGTGCCCCCCGCCGCCGCCCGC
CGCCGCCCGCCACCGTTGGAAACTTCTTTTGCCCGGTTGGGTGGTGCGGA
GAAAGCGGGCTCGGTACATACACGTGGCGTGTTTTAACATCGATGCCACG
CTTTTCTGAAACCGTTGGTAGATCTTGATTTGGGTGGTGTGGAGGAAGAT
GCCCGTGCACATATGCATTTTTCCATGTGATGCCACCACTGACCAACTGT
CGATAGATGTTGTCCTTCTCTCTTAAGTGTGATCATCTCATCAAAAATAT
AGCCCTGGTCCTGGGTAACTTTATCCACCGCAAGCTCAACAAATGAACAA
AAAATCTGGTATAGCTCTTCATAAGTATAATCACATGCACTGCTTCTGTT
TATCGTGTATACCTGTAAATGTGTTCTGCATTTTACGGCGATCATTTTCA
CCGCTGACTGAGTCAAAACAGCACCGTTGTTTTTGTGCCTATGAGAACAT
GAGAGGATGGAGTGGACGCAGGGGCGCGCCCCCCACGCCCAGGACCACGC
CCCTCAACAACGCCACGTTCCTTCCTCTCGCCTCATCTTTTGTGGTTTTG
TTGGCTGCCCCCCCCTTCCCCCTCCCTCCTAGGGACGCACGGTGGTGCTG
GTGGCTCACCGGATCGCCACAGTGCGGAACGCAGACCGCATCCTGGTTGT
GCGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig850:452527..455281-

>mRNA_H-akashiwo_Contig850.14.1 ID=mRNA_H-akashiwo_Contig850.14.1|Name=mRNA_H-akashiwo_Contig850.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=207bp|location=Sequence derived from alignment at H-akashiwo_Contig850:452527..455281- (Heterosigma akashiwo CCMP452)
GGGCCAGAAACAGCGGGTCGCCATCGCCCGGGCGCTGATCCGCAACCCCG
AGGTGCTGCTGCTGGACGAGCCGACCTCGGCGCTGGACCCGGACAGCGAG
GCCGCGGTGCAGGACGCCCTGGACCGCGCCGGGGAGGGACGCACGGTGGT
GCTGGTGGCTCACCGGATCGCCACAGTGCGGAACGCAGACCGCATCCTGG
TTGTGCG
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