mRNA_H-akashiwo_Contig850.10.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig850.10.1
Unique NamemRNA_H-akashiwo_Contig850.10.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig850.10.1 vs. uniprot
Match: A0A7S3USW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USW1_HETAK)

HSP 1 Score: 113 bits (282), Expect = 1.070e-29
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   46 VQVIQCSPFDWHACWLPDGRFIAGNQVEVSEEPGIVFCQEVAVYAPHPP 192
             QVIQCSPFDWHACWLPDGRFIAGNQVEVSEEPGIVFCQEVAVYAPHPP
Sbjct:  105 TQVIQCSPFDWHACWLPDGRFIAGNQVEVSEEPGIVFCQEVAVYAPHPP 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig850.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3USW1_HETAK1.070e-2997.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig850contigH-akashiwo_Contig850:364424..364954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size192
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388011.8450942-CDS-H-akashiwo_Contig850:364423..3644741681388011.8450942-CDS-H-akashiwo_Contig850:364423..364474Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 364424..364474 +
1681388011.8565073-CDS-H-akashiwo_Contig850:364813..3649541681388011.8565073-CDS-H-akashiwo_Contig850:364813..364954Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig850 364814..364954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig850.10.1prot_H-akashiwo_Contig850.10.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig850 364424..364954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig850.10.1

>prot_H-akashiwo_Contig850.10.1 ID=prot_H-akashiwo_Contig850.10.1|Name=mRNA_H-akashiwo_Contig850.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
GWRPRRGPSRTTASTVQVIQCSPFDWHACWLPDGRFIAGNQVEVSEEPGI
VFCQEVAVYAPHPP
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mRNA from alignment at H-akashiwo_Contig850:364424..364954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig850.10.1 ID=mRNA_H-akashiwo_Contig850.10.1|Name=mRNA_H-akashiwo_Contig850.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=531bp|location=Sequence derived from alignment at H-akashiwo_Contig850:364424..364954+ (Heterosigma akashiwo CCMP452)
GGCTGGAGGCCACGGAGGGGCCCTTCGCGGACTACTGCCTCTACCGTCCA
GGTGGGCTCCCCcccccccctCCTCCTCCCCTTGCTTGACCACACACCCT
CTCCCTGTCGCGAACACCAGCTGTTTAGCTCTTTCTTTTGGGCGATTCAT
ATATAAAGGCGCAGCAGTGCCAGGCAGGCTATGAAATGATATTTGACTTC
ACAGCTGTTTAAAAATAATTGACCATTCAGGTTCTATTTTTGTATGGAAG
GCAGGGTTCTCCAGCGAGCTTCTCTCCTCACCCTCTCCCGTCCTTTGCAA
AATGCTTCAAATCTGTGACTTGGTGATTCTTTTTCCAAAGAAAGCATTAG
GACTTATCTGCACCCATCCCCAACCCCCCCCCCCGGCCAGGTGATACAGT
GCTCGCCTTTCGACTGGCATGCCTGCTGGCTCCCGGATGGCCGGTTCATT
GCCGGCAACCAGGTAGAGGTCTCCGAGGAACCTGGGATTGTCTTCTGCCA
AGAGGTGGCCGTGTACGCCCCCCACCCGCCC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig850:364424..364954+

>mRNA_H-akashiwo_Contig850.10.1 ID=mRNA_H-akashiwo_Contig850.10.1|Name=mRNA_H-akashiwo_Contig850.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig850:364424..364954+ (Heterosigma akashiwo CCMP452)
GGCTGGAGGCCACGGAGGGGCCCTTCGCGGACTACTGCCTCTACCGTCCA
GGTGATACAGTGCTCGCCTTTCGACTGGCATGCCTGCTGGCTCCCGGATG
GCCGGTTCATTGCCGGCAACCAGGTAGAGGTCTCCGAGGAACCTGGGATT
GTCTTCTGCCAAGAGGTGGCCGTGTACGCCCCCCACCCGCCC
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