mRNA_H-akashiwo_Contig849.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig849.5.1
Unique NamemRNA_H-akashiwo_Contig849.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S3XM67_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XM67_HETAK)

HSP 1 Score: 451 bits (1161), Expect = 5.120e-158
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 3
Query:    3 MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPEMEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQAGQASPQPAVKLETGPAAMGGLGFGSDS 686
            MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPEMEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQAGQASPQPAVKLETGPAAMGGLGFGSDS
Sbjct:    1 MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPEMEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQAGQASPQPAVKLETGPAAMGGLGFGSDS 228          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A6V1NR77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NR77_HETAK)

HSP 1 Score: 451 bits (1161), Expect = 7.910e-157
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 3
Query:    3 MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPEMEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQAGQASPQPAVKLETGPAAMGGLGFGSDS 686
            MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPEMEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQAGQASPQPAVKLETGPAAMGGLGFGSDS
Sbjct:    1 MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPEMEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQAGQASPQPAVKLETGPAAMGGLGFGSDS 228          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S2V728_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V728_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 6.330e-19
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  210 ASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQ------VSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRV 437
            +S   ++ RG+YRCSRCG PKKGH+CPYQ R+++RDQ +      V T + ACQVELD  +  RMLDL  QG   +YCG+ +
Sbjct:   73 SSRAARRNRGNYRCSRCGAPKKGHICPYQARYRRRDQQENGQSVMVPTSNGACQVELDPYMTVRMLDLRLQGAPASYCGMAI 154          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S2KP23_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP23_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.660e-13
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 3
Query:  192 NTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKR-DQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTY 422
            N K++     K+K RG+YRC RCGVPKKGH+CPYQ + K+R D+     + AA QVE+DE +V R L+L  QG   TY
Sbjct:  264 NVKSSGNVSSKEKGRGNYRCGRCGVPKKGHICPYQPKLKRRPDEPPPEMRTAAVQVEMDEYMVMRRLNLEIQGFPETY 341          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S3NM57_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NM57_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.160e-12
Identity = 37/84 (44.05%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  210 ASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRD-QTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPL 458
            +  +K++ R +YRCS+CG PK+GH+CPYQ R  + D +    T+   CQ+E+D  LV R LDL AQGL  +Y G + + T  P+
Sbjct:   31 SQAQKRRNRTNYRCSKCGQPKRGHICPYQPRILRADGEKPPETRTVGCQIEIDSRLVVRHLDLQAQGLPESY-GEQQSETVSPI 113          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S4A0P4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0P4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.170e-12
Identity = 47/107 (43.93%), Postives = 61/107 (57.01%), Query Frame = 3
Query:  183 PSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKRDQTQ--VSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHGPLPDTISATGGPVPD 497
            P+ +TK   A  E+++ R +YRCS+CG PK+GHVCPYQ R  K D T   V T++AA QVE+DE L  R L L AQG   +Y  +      G  P+      G  PD
Sbjct:   10 PTDDTKKKPA--ERRRNRTNYRCSKCGQPKRGHVCPYQPRVVK-DPTAPAVPTRNAAVQVEMDERLAVRHLSLAAQGYPESYGEIPPXXXXGAPPNYSPGGSGASPD 113          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S1VGY4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VGY4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.950e-12
Identity = 39/80 (48.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:  186 SPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKR-DQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTY 422
            S  +K +    +K K RG YRC RCGVPKKGHVCPYQ + K+R D+     ++AA QVE+DE +  R L+L  QG   +Y
Sbjct:  293 SQKSKGSGKESDKDKGRGSYRCGRCGVPKKGHVCPYQPKLKRRPDEPPPVMRNAALQVEMDEFMTVRRLNLEIQGFPESY 372          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A7S3PWC9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PWC9_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.790e-12
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  228 KKRGDYRCSRCGVPKKGHVCPYQIRFKKR-DQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCG 428
            K RG YRC +CGVPKKGH+CPYQ + K+R D+     ++AA QVE+DE LV R L+L  QG   +Y G
Sbjct:  206 KGRGSYRCGKCGVPKKGHICPYQPKLKRRADEPPPEMRNAATQVEMDEFLVVRRLNLEIQGFPESYTG 273          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A6U6CJ73_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6CJ73_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 6.850e-12
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 3
Query:  222 KQKKRGDYRCSRCGVPKKGHVCPYQIRFKKR-DQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTY 422
            K K RG YRC +CGVPKKGHVCPYQ + K+R D+     + A+ QVE+DE LV R L+L  QGL  +Y
Sbjct:  350 KDKGRGSYRCGKCGVPKKGHVCPYQPKLKRRPDEPPPEMKSASTQVEMDEFLVLRRLNLEIQGLPESY 417          
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Match: A0A1Z5KDJ8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDJ8_FISSO)

HSP 1 Score: 75.9 bits (185), Expect = 8.210e-12
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 3
Query:  201 AAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIRFKKR-DQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTY 422
            ++A    K K RG Y+C RCGVPKKGHVCPYQ + K+R D+    T++AA QVE DE +  R L++  QG   +Y
Sbjct:  229 SSAGESGKDKGRGSYKCGRCGVPKKGHVCPYQAKVKRRPDEPPPETRNAAVQVERDEFMTLRRLNIRIQGFPESY 303          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig849.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3XM67_HETAK5.120e-158100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1NR77_HETAK7.910e-157100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V728_9STRA6.330e-1951.22Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S2KP23_9STRA1.660e-1351.28Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3NM57_9STRA1.160e-1244.05Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A0P4_9STRA1.170e-1243.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1VGY4_9STRA2.950e-1248.75Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3PWC9_9STRA4.790e-1254.41Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A6U6CJ73_9STRA6.850e-1255.88Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1Z5KDJ8_FISSO8.210e-1249.33Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig849contigH-akashiwo_Contig849:155972..156904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog35128.Thaps24142
Model size933
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.53e-11
EggNOG OGs2DQ53@1|root,2REDA@2759|Eukaryota,2XH82@2836|Bacillariophyta
Cds size786
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.8754723-UTR-H-akashiwo_Contig849:155971..1559731681388010.8754723-UTR-H-akashiwo_Contig849:155971..155973Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig849 155972..155973 +
1681388010.89895-UTR-H-akashiwo_Contig849:156759..1569041681388010.89895-UTR-H-akashiwo_Contig849:156759..156904Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig849 156760..156904 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.8850033-CDS-H-akashiwo_Contig849:155973..1567591681388010.8850033-CDS-H-akashiwo_Contig849:155973..156759Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig849 155974..156759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig849.5.1prot_H-akashiwo_Contig849.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig849 155974..156759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig849.5.1

>prot_H-akashiwo_Contig849.5.1 ID=prot_H-akashiwo_Contig849.5.1|Name=mRNA_H-akashiwo_Contig849.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=262bp
MDSSHESQGGGQKRKINRGLRINEDAVGGETSPDRVQEPQENPNKTEDPE
MEGKDIDRRSPSPNTKAAAASLEKQKKRGDYRCSRCGVPKKGHVCPYQIR
FKKRDQTQVSTQDAACQVELDEGLVCRMLDLGAQGLAVTYCGLRVNTTHG
PLPDTISATGGPVPDDGAVGTSPGSAQGKAPTWDWDQGEKADPGSGVGVQ
AGQASPQPAVKLETGPAAMGGLGFGSDSMRQSSSCNNCRLWRLARCLSLP
QPVAHCRWVSR*
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mRNA from alignment at H-akashiwo_Contig849:155972..156904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig849.5.1 ID=mRNA_H-akashiwo_Contig849.5.1|Name=mRNA_H-akashiwo_Contig849.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=933bp|location=Sequence derived from alignment at H-akashiwo_Contig849:155972..156904+ (Heterosigma akashiwo CCMP452)
AAATGGATTCCTCTCATGAAAGTCAAGGTGGTGGGCAAAAAAGGAAGATC AATAGGGGGCTGCGAATTAATGAAGATGCTGTGGGGGGTGAAACCTCACC AGATCGTGTCCAGGAGCCCCAGGAAAACCCAAACAAAACAGAGGACCCTG AAATGGAGGGGAAGGATATTGACCGAAGATCCCCAAGTCCGAACACTAAG GCCGCTGCAGCATCGCTTGAGAAGCAAAAAAAGCGTGGAGATTACAGGTG TTCTAGGTGCGGGGTGCCGAAGAAGGGCCACGTGTGCCCATACCAGATCC GATTCAAAAAGCGCGACCAAACCCAGGTTTCTACCCAAGACGCAGCGTGC CAGGTGGAGCTGGATGAGGGCTTGGTGTGTCGAATGTTAGACCTTGGGGC ACAAGGTTTGGCCGTTACATACTGTGGCCTTCGCGTCAACACCACACACG GCCCACTGCCTGACACCATCTCCGCCACAGGGGGGCCGGTGCCTGACGAT GGCGCTGTCGGCACAAGCCCTGGCTCTGCTCAAGGCAAGGCCCCCACCTG GGACTGGGACCAAGGGGAGAAAGCTGACCCAGGGTCGGGTGTCGGGGTGC AGGCAGGACAAGCGAGCCCTCAGCCAGCAGTGAAGCTGGAGACCGGGCCT GCGGCCATGGGGGGGTTGGGCTTCGGGTCAGATTCGATGAGGCAATCCTC CTCATGCAACAACTGCAGGCTCTGGAGACTGGCTCGCTGCCTCAGCCTCC CCCAGCCAGTGGCGCACTGCCGATGGGTCAGCCGATGAATCAGCCGATGA ATATGGCTCAGCAACAGGCCTTTATGTTTTACATGCAGCAGCAGCAGCAG CAGCAGCAGGTCATGGCAGCATTAGGAGGAATGGGCATGCCTATCCTTGG TGGTCAGCAGGGGATGGGCTTTGGTGAAGCAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig849:155972..156904+

>mRNA_H-akashiwo_Contig849.5.1 ID=mRNA_H-akashiwo_Contig849.5.1|Name=mRNA_H-akashiwo_Contig849.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=786bp|location=Sequence derived from alignment at H-akashiwo_Contig849:155972..156904+ (Heterosigma akashiwo CCMP452)
ATGGATTCCTCTCATGAAAGTCAAGGTGGTGGGCAAAAAAGGAAGATCAA
TAGGGGGCTGCGAATTAATGAAGATGCTGTGGGGGGTGAAACCTCACCAG
ATCGTGTCCAGGAGCCCCAGGAAAACCCAAACAAAACAGAGGACCCTGAA
ATGGAGGGGAAGGATATTGACCGAAGATCCCCAAGTCCGAACACTAAGGC
CGCTGCAGCATCGCTTGAGAAGCAAAAAAAGCGTGGAGATTACAGGTGTT
CTAGGTGCGGGGTGCCGAAGAAGGGCCACGTGTGCCCATACCAGATCCGA
TTCAAAAAGCGCGACCAAACCCAGGTTTCTACCCAAGACGCAGCGTGCCA
GGTGGAGCTGGATGAGGGCTTGGTGTGTCGAATGTTAGACCTTGGGGCAC
AAGGTTTGGCCGTTACATACTGTGGCCTTCGCGTCAACACCACACACGGC
CCACTGCCTGACACCATCTCCGCCACAGGGGGGCCGGTGCCTGACGATGG
CGCTGTCGGCACAAGCCCTGGCTCTGCTCAAGGCAAGGCCCCCACCTGGG
ACTGGGACCAAGGGGAGAAAGCTGACCCAGGGTCGGGTGTCGGGGTGCAG
GCAGGACAAGCGAGCCCTCAGCCAGCAGTGAAGCTGGAGACCGGGCCTGC
GGCCATGGGGGGGTTGGGCTTCGGGTCAGATTCGATGAGGCAATCCTCCT
CATGCAACAACTGCAGGCTCTGGAGACTGGCTCGCTGCCTCAGCCTCCCC
CAGCCAGTGGCGCACTGCCGATGGGTCAGCCGATGA
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