mRNA_H-akashiwo_Contig849.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig849.4.1
Unique NamemRNA_H-akashiwo_Contig849.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A7S3UXJ6_HETAK (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXJ6_HETAK)

HSP 1 Score: 333 bits (854), Expect = 2.860e-114
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRIFNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRIFNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG
Sbjct:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRIFNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 163
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BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A8C3AR17_CYCLU (Ubiquitinyl hydrolase 1 n=3 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C3AR17_CYCLU)

HSP 1 Score: 146 bits (369), Expect = 1.090e-41
Identity = 70/169 (41.42%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEER---GRIF---NSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            ++HEKQRL+ C +HA+NN+LQE+ F+K+  D I + LAP   +NPHRS LGTGNYDVNV+M ALQS++L++ W D+RR V  + +    G ++NV  R   G +F      HW  +R++   Y++LDSKL+ P C+G + E    L ++  Q + ++++V+     ++G
Sbjct:    6 VFHEKQRLELCAIHALNNVLQERVFTKETADDICKRLAPQCVVNPHRSVLGTGNYDVNVIMAALQSRELAAVWWDKRRTVQSLCMPKVQGFILNVPSRVSLGIVFLPLRRRHWLAVRQVNGQYYNLDSKLKSPVCIGGEAELRTFLSEQLSQDVAEMLLVVRREVEEDG 174
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: UPI001CDD1EC0 (josephin-2 isoform X1 n=2 Tax=Gambusia affinis TaxID=33528 RepID=UPI001CDD1EC0)

HSP 1 Score: 147 bits (371), Expect = 1.460e-41
Identity = 69/169 (40.83%), Postives = 109/169 (64.50%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            ++HEKQRL+ C +HA+NN+LQE+ F+K+  D I + LAP   +NPHRS LGTGNYDVNV+M ALQS+DL++ W D+RR V  + +    G ++NV  R  +          HW  +R++   Y++LDSKL+ P C+G + E    L ++  Q++ ++++V+     ++G
Sbjct:   40 VFHEKQRLELCAIHALNNVLQERVFTKETADDICKRLAPQCVVNPHRSVLGTGNYDVNVIMAALQSRDLAAVWWDKRRMVQSLCMSKVQGFILNVPSRVSLGIVSLPLRRRHWLAVRQVNGQYYNLDSKLKGPACIGGEAELRAFLSEQLSQEVAEMLLVVRRDVEEDG 208
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BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A3P8YFQ1_ESOLU (Ubiquitinyl hydrolase 1 n=1 Tax=Esox lucius TaxID=8010 RepID=A0A3P8YFQ1_ESOLU)

HSP 1 Score: 147 bits (371), Expect = 2.160e-41
Identity = 69/160 (43.12%), Postives = 104/160 (65.00%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMV 462
            ++HEKQRL+ C +HA+NN+LQE+ F+K+  D I + LAP   +NPHRS LGTGNYDVNV+M ALQ +DL++ W D+RR V  + +    G ++NV  R  +          HW  +R++   Y++LDSKL+ P C+G Q E    L ++  Q +T++++V
Sbjct:   54 VFHEKQRLELCAIHALNNVLQERVFTKETADDICKRLAPQCVVNPHRSMLGTGNYDVNVIMAALQCRDLAAVWWDKRRTVQSLCVDKVQGFILNVPSRVSLGIVSLPLRRRHWLAVRQVNGQYYNLDSKLKSPVCIGNQAELRTFLSEQLSQDVTEMLLV 213
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A8C6T3I9_9GOBI (Ubiquitinyl hydrolase 1 n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6T3I9_9GOBI)

HSP 1 Score: 145 bits (366), Expect = 5.410e-41
Identity = 68/169 (40.24%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            ++HEKQRL+ C +HA+NN+LQE+ F+K+  D I + LAP   +NPHRS LGTGNYDVNV+M ALQS++L++ W D+RR V ++ +    G ++NV  R  +          HW  +R++   Y++LDSKL+ P C+G + E    L ++  Q++ ++++V+     ++G
Sbjct:   25 VFHEKQRLELCAIHALNNVLQERVFTKETADDICKRLAPQCMVNPHRSVLGTGNYDVNVIMAALQSRELAAVWWDKRRTVQNLCVSKVLGFILNVPSRISLGIVSLPLRRRHWLAVRQVTGQYYNLDSKLKNPVCIGGEAELRAFLSEQLSQEVAEMLLVVQREVEEDG 193
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A1A8EV99_9TELE (Ubiquitinyl hydrolase 1 (Fragment) n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8EV99_9TELE)

HSP 1 Score: 147 bits (371), Expect = 6.320e-41
Identity = 68/169 (40.24%), Postives = 108/169 (63.91%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            ++HEKQRL+ C +HA+NN+LQE+ F+K+  D I + LAP   +NPHRS  GTGNYDVNV+M ALQS++L++ W D+RR V  + +    G ++NV  R  +          HW  +R++G  Y++LDSKL+ P C+G + E    L ++  Q + ++++V+     ++G
Sbjct:   94 VFHEKQRLELCAIHALNNVLQERVFTKETADDICKRLAPQCVVNPHRSVFGTGNYDVNVIMAALQSRELAAVWWDKRRSVQSLCMSKVQGFILNVPSRVSLGIVSLPLRRRHWLAVRQVGGQYYNLDSKLKSPVCIGGEAELCTFLSEQLSQDVAEMLLVVQREVEEDG 262
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: UPI001B7E46FA (josephin-2 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E46FA)

HSP 1 Score: 144 bits (363), Expect = 8.840e-41
Identity = 68/169 (40.24%), Postives = 110/169 (65.09%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            +YHE+Q L+ C VHA+NNLLQ++ FSK++ D +   LAP + +NPHRS LGTGNYDVN+LM AL ++  ++ W D+RR +T + L    GL++N+     +          HW  +R++G SY++LDSKL+ P  +G +E+  + LQ++  Q+  Q+++V+     ++G
Sbjct:   10 LYHERQHLELCAVHALNNLLQQRLFSKEELDRLCGQLAPDSLLNPHRSLLGTGNYDVNILMAALLTRGFAAIWWDKRRSLTSLVLSRVHGLILNIPSNVTLGFVSLPIRRKHWVAVRQVGGSYYNLDSKLKAPAHIGGEEDLRKFLQEQVAQEPCQLLLVVEREVEEDG 178
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A0P7UX20_SCLFO (Ubiquitinyl hydrolase 1 n=4 Tax=Osteoglossiformes TaxID=41712 RepID=A0A0P7UX20_SCLFO)

HSP 1 Score: 144 bits (362), Expect = 1.250e-40
Identity = 67/169 (39.64%), Postives = 109/169 (64.50%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            ++HEKQRL+ C +HA+NN+LQE+ F+K+  D I + LAP   +NPHRS LGTGNYDVNV+M ALQS+ L++ W D+RR +  +  +   G ++NV  R  +          HW  +R++  +Y++LDSKL+ P C+G + E    L ++  Q ++++++V+     ++G
Sbjct:    6 IFHEKQRLELCAIHALNNVLQERVFTKETADDICKRLAPQCVVNPHRSVLGTGNYDVNVIMAALQSRGLAAVWWDKRRSIECLCANKVQGFILNVPSRVSLGMVSLPLRRRHWLAVRQVSGTYYNLDSKLKNPVCIGGEAELRTFLSEQLSQDLSEMLLVVQRDVEEDG 174
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A8C4YHQ5_9SAUR (Ubiquitinyl hydrolase 1 n=2 Tax=Gopherus evgoodei TaxID=1825980 RepID=A0A8C4YHQ5_9SAUR)

HSP 1 Score: 143 bits (361), Expect = 1.940e-40
Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            +YHE+QRL+ C VHA+NN+LQE+ F+++  D I + LAP A +NPHRS LGTGNYDVNV+M ALQS D ++ W D+RR +  + L    G +VNV     +          HW  +R++G +Y++LDSKL+ P C+G + E    LQ    Q   ++++V++ A  + G
Sbjct:   13 VYHERQRLELCAVHALNNVLQERRFTQEAADEICKRLAPDARLNPHRSVLGTGNYDVNVIMAALQSLDFAAIWWDKRRPLEQLVLSRVHGFIVNVPSNVSLGFVSLPVRRKHWIAVRQVGGTYYNLDSKLKAPACVGGEGELRAFLQDFLSQGPCEVLLVVSRAVEESG 181
[Close]
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Match: A0A452J6V3_9SAUR (Ubiquitinyl hydrolase 1 n=6 Tax=Durocryptodira TaxID=1579337 RepID=A0A452J6V3_9SAUR)

HSP 1 Score: 143 bits (361), Expect = 1.940e-40
Identity = 72/169 (42.60%), Postives = 107/169 (63.31%), Query Frame = 1 
Query:    1 MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYLGTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGRI------FNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQIIMVMANATIQEG 489
            +YHE+QRL+ C VHA+NN+LQE+ F+++  D I + LAP A +NPHRS LGTGNYDVNV+M ALQS D ++ W D+RR +  + L    G +VNV     +          HW  +R++G +Y++LDSKL+ P C+G + E    LQ    Q   ++++V++ A  + G
Sbjct:   13 VYHERQRLELCAVHALNNVLQERRFTQEAADEICKRLAPDARLNPHRSVLGTGNYDVNVIMAALQSLDFAAIWWDKRRPLEQLVLSRVHGFIVNVPSNVSLGFVSLPVRRKHWIAVRQVGGTYYNLDSKLKAPACVGGEGELRAFLQDFLSQGPCEVLLVVSRAVEESG 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig849.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UXJ6_HETAK2.860e-114100.00Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heteros... [more]
A0A8C3AR17_CYCLU1.090e-4141.42Ubiquitinyl hydrolase 1 n=3 Tax=Cyclopterus lumpus... [more]
UPI001CDD1EC01.460e-4140.83josephin-2 isoform X1 n=2 Tax=Gambusia affinis Tax... [more]
A0A3P8YFQ1_ESOLU2.160e-4143.13Ubiquitinyl hydrolase 1 n=1 Tax=Esox lucius TaxID=... [more]
A0A8C6T3I9_9GOBI5.410e-4140.24Ubiquitinyl hydrolase 1 n=2 Tax=Neogobius melanost... [more]
A0A1A8EV99_9TELE6.320e-4140.24Ubiquitinyl hydrolase 1 (Fragment) n=8 Tax=Nothobr... [more]
UPI001B7E46FA8.840e-4140.24josephin-2 n=1 Tax=Carcharodon carcharias TaxID=13... [more]
A0A0P7UX20_SCLFO1.250e-4039.64Ubiquitinyl hydrolase 1 n=4 Tax=Osteoglossiformes ... [more]
A0A8C4YHQ5_9SAUR1.940e-4042.60Ubiquitinyl hydrolase 1 n=2 Tax=Gopherus evgoodei ... [more]
A0A452J6V3_9SAUR1.940e-4042.60Ubiquitinyl hydrolase 1 n=6 Tax=Durocryptodira Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig849contigH-akashiwo_Contig849:125435..125923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog48698.ENSPFOP00000010099
Preferred nameJOSD2
PFAMsJosephin
Model size489
Max annot lvl33208|Metazoa
KEGG koko:K15235
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0036211,GO:0036459,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0070011,GO:0070646,GO:0070647,GO:0071704,GO:0101005,GO:0140096,GO:1901564
Exons1
Evalue8.94e-43
EggNOG OGsKOG2934@1|root,KOG2934@2759|Eukaryota,39SVM@33154|Opisthokonta,3BARU@33208|Metazoa,3CWKE@33213|Bilateria,48455@7711|Chordata,493KV@7742|Vertebrata,49XXC@7898|Actinopterygii
EC3.4.19.12
DescriptionJosephin domain containing 2
Cds size489
COG categoryS
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.8390143-CDS-H-akashiwo_Contig849:125434..1259231681388010.8390143-CDS-H-akashiwo_Contig849:125434..125923Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig849 125435..125923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig849.4.1prot_H-akashiwo_Contig849.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig849 125435..125923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig849.4.1

>prot_H-akashiwo_Contig849.4.1 ID=prot_H-akashiwo_Contig849.4.1|Name=mRNA_H-akashiwo_Contig849.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=163bp
MYHEKQRLQHCGVHAVNNLLQEKAFSKQDFDSISRSLAPSAWINPHRSYL
GTGNYDVNVLMMALQSKDLSSRWHDQRRKVTDINLHLCSGLLVNVEERGR
IFNSHHWYTIRKIGQSYFDLDSKLQEPCCLGTQEEALRHLQQKQQQQMTQ
IIMVMANATIQEG
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mRNA from alignment at H-akashiwo_Contig849:125435..125923-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig849.4.1 ID=mRNA_H-akashiwo_Contig849.4.1|Name=mRNA_H-akashiwo_Contig849.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig849:125435..125923- (Heterosigma akashiwo CCMP452)
ATGTATCACGAAAAACAGCGACTCCAACATTGTGGTGTCCATGCTGTCAA
CAATCTTCTACAAGAAAAGGCGTTCTCAAAACAGGATTTTGACAGTATTA
GCCGGAGTCTAGCTCCCTCGGCATGGATCAACCCACATCGATCATATCTA
GGTACTGGAAATTACGATGTGAATGTGCTTATGATGGCCTTGCAGTCCAA
GGATCTGTCCAGCAGGTGGCACGACCAAAGGAGAAAGGTCACTGACATCA
ACCTTCATCTTTGTTCAGGGCTATTGGTGAATGTGGAGGAGAGGGGTAGA
ATCTTCAATTCTCATCATTGGTATACCATCAGAAAAATTGGTCAAAGCTA
CTTTGACTTGGACAGTAAGCTCCAAGAACCCTGCTGCCTGGGTACTCAGG
AGGAGGCCCTCAGACACTTGCAACAAAAACAACAGCAACAAATGACTCAG
ATCATCATGGTGATGGCCAACGCCACCATTCAAGAGGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig849:125435..125923-

>mRNA_H-akashiwo_Contig849.4.1 ID=mRNA_H-akashiwo_Contig849.4.1|Name=mRNA_H-akashiwo_Contig849.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=489bp|location=Sequence derived from alignment at H-akashiwo_Contig849:125435..125923- (Heterosigma akashiwo CCMP452)
ATGTATCACGAAAAACAGCGACTCCAACATTGTGGTGTCCATGCTGTCAA
CAATCTTCTACAAGAAAAGGCGTTCTCAAAACAGGATTTTGACAGTATTA
GCCGGAGTCTAGCTCCCTCGGCATGGATCAACCCACATCGATCATATCTA
GGTACTGGAAATTACGATGTGAATGTGCTTATGATGGCCTTGCAGTCCAA
GGATCTGTCCAGCAGGTGGCACGACCAAAGGAGAAAGGTCACTGACATCA
ACCTTCATCTTTGTTCAGGGCTATTGGTGAATGTGGAGGAGAGGGGTAGA
ATCTTCAATTCTCATCATTGGTATACCATCAGAAAAATTGGTCAAAGCTA
CTTTGACTTGGACAGTAAGCTCCAAGAACCCTGCTGCCTGGGTACTCAGG
AGGAGGCCCTCAGACACTTGCAACAAAAACAACAGCAACAAATGACTCAG
ATCATCATGGTGATGGCCAACGCCACCATTCAAGAGGGG
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