mRNA_H-akashiwo_Contig848.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig848.5.1
Unique NamemRNA_H-akashiwo_Contig848.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig848.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig848contigH-akashiwo_Contig848:321296..325826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size266
Hectar predicted targeting categorysignal anchor
Exons4
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.67111-CDS-H-akashiwo_Contig848:321295..3213431681388010.67111-CDS-H-akashiwo_Contig848:321295..321343Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig848 321296..321343 +
1681388010.6829174-CDS-H-akashiwo_Contig848:321501..3215911681388010.6829174-CDS-H-akashiwo_Contig848:321501..321591Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig848 321502..321591 +
1681388010.6910636-CDS-H-akashiwo_Contig848:322498..3225721681388010.6910636-CDS-H-akashiwo_Contig848:322498..322572Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig848 322499..322572 +
1681388010.701554-CDS-H-akashiwo_Contig848:325774..3258261681388010.701554-CDS-H-akashiwo_Contig848:325774..325826Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig848 325775..325826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig848.5.1prot_H-akashiwo_Contig848.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig848 321296..325826 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig848.5.1

>prot_H-akashiwo_Contig848.5.1 ID=prot_H-akashiwo_Contig848.5.1|Name=mRNA_H-akashiwo_Contig848.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=88bp
MEVFPDDLTSLTYKCVLGACILSCTGCLFVICSIYKFPSLRAFPFRMVGW
LASADLGICFAYFLGTGAGTGHFRCYLQGVSYIYFNLV
back to top

mRNA from alignment at H-akashiwo_Contig848:321296..325826+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig848.5.1 ID=mRNA_H-akashiwo_Contig848.5.1|Name=mRNA_H-akashiwo_Contig848.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4531bp|location=Sequence derived from alignment at H-akashiwo_Contig848:321296..325826+ (Heterosigma akashiwo CCMP452)
ATGGAGGTCTTCCCAGATGATTTAACATCTCTGACTTACAAATGCGTGGT
AAGAAAAGAAAAGAAGTGTTCACATTAGCATAAAGGAACATAGGAAAGAC
AAAAGGCGCAGTCATGTCATTATTGTAGTTTTTTACATTCATGAATTTCC
TCCTTCTGGGGCAAAATGGTATTCCTCCTCCTTTTGAACCTAATCTACTC
TAATAGCTTGGGGCTTGCATTTTATCATGTACGGGATGTCTGTTTGTCAT
CTGCAGTATCTACAAGTTTCCTTCTCTGAGAGCATTTCCCTTTAGGGTAA
GGACTTCCTCTTCCTGGGTCTATGAATGGAAAATGAGACTAGGTTGTCAA
TAGAAGATAGTATTATGCTTTGTGCACATTTGTAATCTCAGTGCATATTT
GTTTCACTCCACGAATATTTTTGCGATGTCATTGTTGTTTTATTATATAA
TATTTCAGTGCTCCTCGGATAACCTCCCAATCGGCTTTCACGACGCCTCT
GACCGCCTCCAAGTGGGTGACACAGAATAACTATAGTCCCAAATGTAAGG
ATTGACGTGAAAAGTTAACTAGTCCCAAATGCAAGGATTACGCAAAAAGT
CGATGTCTCACACTCATGGAAATTGTCTTAGTCCTACATCCAGGACAAAA
AGTCTCCCGGAAATCAGTGGGAGATGATCGTATGAAAATGAGATTTAAAT
AGTTTTGAAATAGATTGCTTGAAAAATGTACGCCTCTGTAAATTTGTTTG
TCTGTAATTTCTTGAAAGGTCAAGCTTGTTTGTGTATGGCGACCTTAGAT
GTCCGTGATAGTCCATCATCACCCAAAACACAGTTTTATGCCAGTTCTCC
TGGAGTGGTGACAATTACTTTTTTCAAGCCCTCAGTATCAGATACTTGGA
AGGAATATATGTAATAATATGCAAGTTTTTTTTTTTTTTTTTTTTAATTA
TTATATACAGTCACCCAACCTACTTTCGTAGCGTTACTTATAAGTTGTAA
AAACTCTGAAATGCTATTAGGGTACTAAAACAGTAGTAACCATCAGACAG
TATTTTTGTTGTGGTTCTGTTCTTACCAATATCTAGTACTGCACATCTTA
ACAATCCTGTGGGGATATATCATCATTTTTTCTTCCAATCCCCCCCTTCC
CCCTTCAAGTTGATGACATCATTAGAGTGCTTGACCCCCATGCTGTTGTT
CAGATGGTAGGCTGGCTAGCTTCAGCTGATCTGGGGATTTGTTTTGCTTA
TTTCTTGGGCACTGGAGCTGGGACAGGGTAAGTGAATATAATAGACAATA
CGAACGCAATATATCGTTCGTATTGAGCTGTTGTACATTTTTTTTTAAAT
ACGTTCGCATGCCTCGTCACATCCTAAGGAAGGTCCTCTACTCCAGCCGA
CCCATCATGTTGAGCCATCTCTGAGCTTGTCGATGTGAACCTTGTAGTGT
TGGCGCTCGCATCATCGCGCCTTCCAATGCTCCCGAATTTCCCTATGATG
CGCCTCGGGCCACCATCCTTCGCTGACAACCTCCTTCTGTTACCGCTCTG
TCAGGTCATTGAACCCTACCCTTCCGTAAGTCGCCCTGCCCTGGGAGTTC
CGGCGCTTGCTCCTTCCACGTCACTCTCCCACTTCACCACCACCGTATCC
AATCATGCCTAACTAAGGTCTTAACGGAAGGCACCAATCCAGCCCTAGAT
CAAGCATGTGTGCCTTCCTTTAAGACCTTTTAATGTAGTCAAATGGAATA
GCTCAATACTTGATGATGATGGTCTTATCAGAAACAAGCCCAATATTTTT
TTTTTTTTTGTCTCGTAGTACACACCATGCTTCATGCTCTTCATGGTGCC
GGTCAGTCCCCATATCTTTGACCGGTGTTACTTGCGTGGCTGTGCCGAGA
TCGCACCgGTCGATACTTGCGGGATAATTCCGTCAGGCGTGGCGCTTATC
CGGGTCTAGGGCCGCCTGGTCCGTGATCATTCTCGTCTCACGTCGACATT
CCCCCGCTAATCGTTCAATTGTTCGTATTCTCGAATTCGAAGCATCGTCC
GGCGAACCAATCGCGCGCACATCCAAGTGTCACCAACTTGACATGACGGG
ATTCGATCCGTCTACTTGATGCTTCGAAGTCGAACCTTTGAACTATTGAG
CTATTCCGGGTTATCAAGGACAAAACATGCTGGCAGCCCTGGACGTGCAA
CACAACACATCTCTTACCAGAATACCCTCAATACCTCTGCCCGTGAAAAG
GTGAGGAGGTACAAGGCTGCTGCGGAAGAGCGCCGTGCTACTTTCTGACC
CTTGATAGTGACTGTGGAGGGTATTGCCCACCAGTCCATGCAGGCCTTCC
TCAGGCGCATTGCTGCTCGGCTCTCGGCGGTGGCAGAAGCCTCTCTCAAC
GGTCAGCAACTGTGCGTGTCCGTGTGCAGTTCGCTCAAAGCGGCGTGGAT
CTGCGGACCAGGGGCTCCAGGAAGAGGTGGAGGAACTCGGGGGTTCGAGG
AAGGCGAGGGAATGCCGTTCTCTTCCAGAGATAGTGGGGTGTGCTGTATT
CGATTTTTTGTATTGATTTGGGTTTTAGGATTTCATGTTTAGATTTTAGT
ATATATGTATATTACCACAGGGACATCTGCATAGATGCAAAATGCAAGGC
GTGGGTTGTTTTGGTTAAATTTAACTCTCTTATATAAATATATAATATTT
TGAGTGTTGGCCCTTTGCAAGTAAATTTTCCCCATAACTTTCAAAGAATT
GCTCCAAATAGGGTGGGGGAAGAGGGAGAAGAATGATTAACTTCCCCAAC
ACTATCTATAACTCCCCCCACCCTTTTTTGGGGGGGGGGGGGATCTTTGG
GAGTTCTAGAACATTCTTTTAAAGTGCAAGTTCAAGGTAAAATATATTCC
TGGCCCCTAAACGGCCCATATCCCTTTTCGAGGAGTTCTTTGAAAGTTCG
GAAGTTTTCTGAAAGTTTTCGGGATTCTGGGCCATTTTCTGGATGTGTTT
ACTTGTAAAATTTACCATTCATCTAATGTTACTTATAAGGCCCTTCAATA
TACACTCCAAGTCATTTAAAAATGTCTGTCTGTCTGGTTGTTCCTTACTC
ATGTAAACAAATGTAAGCCACCGATATATATATTGTAAACTGAGCCAGCC
CCTATAAACATGCAGAACTGTACTTGAACAAGCTCTAATAAATTATCTTC
ACTGTAGCAAAAAACTGCCATAACAACTGCATGGGGATACAAGGTTGCTT
GCTATTGAGAGACATGGTCGTACAGCCACTTAAAAAAAGAGGGGAAGAAA
GGAGAGGGGGGGGAGTTTAGGGGGGGCAAGTCATTCTTCACATGTCCCAG
AACCATTTCCCCTTCCCCTCCCCCATTATACCATCTTCTTGCTCCCAAAA
GCCAGGCCAGGCCATGCTGCCACTACTACTACAGTGCATCTTTCCCCTTC
TTCTATATACCCCCATGTTTGCTAGCCAGTCCTTCTTCATTCAGCATCTC
CCGTCGCCACCGCCACCGCCGTGGCCTCCTGGGAATCCCACCACTCTGTT
GCCCCGCTCGCATATTCTGCTCCAGATCTAGAAGCCCCTTCTGCCGGATC
CTAAGGAGGCCATTGAAGGGGTGGCCCCGACTGGGGAGGATGGTTCAAGG
GATGATGGAATGACGGGACGCACTTGTGGGGAGGAGGCATATACTGGTGT
GTGTGTGCGTGTGTAGCAAGGAGGACTGTGTGGAAGAAGGGGAGGAGCGG
GAGTACGGATAATACTTGACAGGCTGATGAGGCACTGGGTGGATCTGGCT
ATGCAAAAAAAGGAGGGCAAGCCGCAGGCCACTGCAGATGGTTTGGTCTG
GTATAGCGGTGCGCAGTATGACGGCTACGAAGATGAATTTGGCTCTGGTG
AAAGCCTTTGGGGTCTGCAGtTTTTGAGAGGGCCTGGGTGGAGACCGATG
AAGACTATAGCAAACATGGGGGCTCTCGAGAGGGATGGGCAAGCTCTGTG
AGTTACATGGGTGCTGTGGGCAGGAAGGGGATCGCGAGCGGAAGGATGCG
ATTTGCGAGTGGTGGTGAACCGTCGGTGGTGGGGGGGAAACGTGGGTGGG
TGTTGGGGAGTGATGGGCGGAATGGATTGATTGTCTGTGGGTAGAACAAA
GTTGGAAGTTGCATTGCAATCGGGGGTGAGTGTGTTCATACAAGGTCGGG
TCTGCAGCATAATTTTTAAATTGGAATTGGGAGATGGCTTGGAGGATGTG
CTGGGAATGGTGTTGGTGGTGCAGGTCCCACCCCCTATGGTGTGAGTACA
TTACCTAGACCTACCTTTACAAAATATATTCAACATCATCATCATCATCA
TGTCCCAGCAACCAAGACAGCACATGTACATGCTGTGTATTTGTGCGCAT
TCCTTTCCCCTCCTTTAGCACAGCGATCATTGTCTCGCCAATGCCTTCCC
TGTCCCTTCGCCATACTACTTTCTGCCAGCCATTTTAGGTGCTATCTTCA
AGGTGTATCCTACATCTATTTCAACTTGGTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig848:321296..325826+

>mRNA_H-akashiwo_Contig848.5.1 ID=mRNA_H-akashiwo_Contig848.5.1|Name=mRNA_H-akashiwo_Contig848.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=264bp|location=Sequence derived from alignment at H-akashiwo_Contig848:321296..325826+ (Heterosigma akashiwo CCMP452)
ATGGAGGTCTTCCCAGATGATTTAACATCTCTGACTTACAAATGCGTGCT
TGGGGCTTGCATTTTATCATGTACGGGATGTCTGTTTGTCATCTGCAGTA
TCTACAAGTTTCCTTCTCTGAGAGCATTTCCCTTTAGGATGGTAGGCTGG
CTAGCTTCAGCTGATCTGGGGATTTGTTTTGCTTATTTCTTGGGCACTGG
AGCTGGGACAGGCCATTTTAGGTGCTATCTTCAAGGTGTATCCTACATCT
ATTTCAACTTGGTT
back to top