mRNA_H-akashiwo_Contig847.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig847.8.1
Unique NamemRNA_H-akashiwo_Contig847.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A6V1TY31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TY31_HETAK)

HSP 1 Score: 103 bits (257), Expect = 6.950e-24
Identity = 51/53 (96.23%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSV  VVQ
Sbjct:  166 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVKRVVQ 218
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A7S2V6D7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6D7_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-16
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP +NVQTIKL+DCRRVVLFH  KE+Q V+VRH++I A PTGISRS+  VVQ
Sbjct:    2 MFPALNVQTIKLSDCRRVVLFHLNKEEQLVDVRHFAISAAPTGISRSIKRVVQ 54
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A482SMJ3_9ARCH (Brix domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SMJ3_9ARCH)

HSP 1 Score: 74.3 bits (181), Expect = 1.370e-13
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP INV+T++L+  RRVVLFHY KE  TVE+RHY+IRA P GIS+SV  +VQ
Sbjct:   49 MFPTINVKTVQLSQVRRVVLFHYHKESDTVEMRHYAIRANPVGISKSVKRIVQ 101
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A835ZHT7_9STRA (Brix domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHT7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.960e-13
Identity = 33/53 (62.26%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP INV  +KLADCRR+VLF+Y K  ++VE+RHY+IRA+PTGI++++  VVQ
Sbjct:  167 MFPTINVAEVKLADCRRIVLFNYDKATKSVEMRHYAIRAMPTGINKAIKKVVQ 219
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A7S1TNR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNR7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.290e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            +FP INV  +KLADCRRVVLFH  K+  T+E+RHY IRA P G++R V  VV+
Sbjct:   93 LFPAINVANMKLADCRRVVLFHLDKDTDTIELRHYCIRATPAGVNRGVRKVVR 145
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A7S3GU20_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GU20_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 5.140e-12
Identity = 31/53 (58.49%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP IN++T+KL++CRRVVLFH L ED  VE+RHY++RA P G+S+SV  +++
Sbjct:  143 MFPTINIKTVKLSECRRVVLFH-LMEDGNVEMRHYAVRANPVGVSKSVKRIIE 194
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: D3BS90_POLPP (Brix domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BS90_POLPP)

HSP 1 Score: 70.5 bits (171), Expect = 5.460e-12
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            +FP INV T++LA C+R+VLF+Y KED TVE RHY IR   TGIS+S+  V+Q
Sbjct:  181 LFPSINVLTLQLAKCKRIVLFNYNKEDGTVEFRHYKIRVAETGISKSIKRVIQ 233
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A2D4BJF1_PYTIN (SWI4 1, Peter Pan-like protein suppressor n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJF1_PYTIN)

HSP 1 Score: 70.1 bits (170), Expect = 7.590e-12
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP I+VQT++L++CRRVVLF+Y KE  TVE R Y IRA P G+S+SV  +V+
Sbjct:  161 MFPAIDVQTVQLSECRRVVLFNYXKETDTVEFRQYXIRATPLGLSKSVKTIVK 213
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: A0A1V9ZSR9_9STRA (SWI4 1, Peter Pan-like protein suppressor n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZSR9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.700e-12
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP I+VQTI LADCRRVVLFHY KE   VE R Y IRA+P G+S+SV  +V+
Sbjct:  161 MFPAIDVQTISLADCRRVVLFHYDKETGHVEFRQYVIRAMPLGLSKSVKTLVK 213
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BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Match: D7FV54_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV54_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.030e-11
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAGVVQ 159
            MFP INV T+KL DCRRVV+F+  K + TVE+RH+++RA PTGI++++  VVQ
Sbjct:  171 MFPSINVATVKLQDCRRVVMFNLDKTNGTVEMRHFAVRATPTGITKAIKKVVQ 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig847.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1TY31_HETAK6.950e-2496.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V6D7_9STRA1.240e-1671.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482SMJ3_9ARCH1.370e-1366.04Brix domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A835ZHT7_9STRA2.960e-1362.26Brix domain-containing protein (Fragment) n=1 Tax=... [more]
A0A7S1TNR7_9STRA4.290e-1260.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3GU20_9STRA5.140e-1258.49Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
D3BS90_POLPP5.460e-1260.38Brix domain-containing protein n=1 Tax=Polysphondy... [more]
A0A2D4BJF1_PYTIN7.590e-1260.38SWI4 1, Peter Pan-like protein suppressor n=1 Tax=... [more]
A0A1V9ZSR9_9STRA7.700e-1266.04SWI4 1, Peter Pan-like protein suppressor n=1 Tax=... [more]
D7FV54_ECTSI1.030e-1158.49Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig847contigH-akashiwo_Contig847:441403..443305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog115417.EPrPW00000025684
PFAMsBrix
Model size315
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.05e-12
EggNOG OGsKOG2963@1|root,KOG2963@2759|Eukaryota,1MBDR@121069|Pythiales
DescriptionSWI4 1, Peter Pan suppressor. Source PGD
Cds size315
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388010.463352-CDS-H-akashiwo_Contig847:441402..4414771681388010.463352-CDS-H-akashiwo_Contig847:441402..441477Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig847 441403..441477 +
1681388010.4758933-CDS-H-akashiwo_Contig847:442491..4425561681388010.4758933-CDS-H-akashiwo_Contig847:442491..442556Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig847 442492..442556 +
1681388010.4855351-CDS-H-akashiwo_Contig847:442852..4429361681388010.4855351-CDS-H-akashiwo_Contig847:442852..442936Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig847 442853..442936 +
1681388010.4953234-CDS-H-akashiwo_Contig847:443214..4433051681388010.4953234-CDS-H-akashiwo_Contig847:443214..443305Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig847 443215..443305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig847.8.1prot_H-akashiwo_Contig847.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig847 441403..443305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig847.8.1

>prot_H-akashiwo_Contig847.8.1 ID=prot_H-akashiwo_Contig847.8.1|Name=mRNA_H-akashiwo_Contig847.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=105bp
MFPPINVQTIKLADCRRVVLFHYLKEDQTVEVRHYSIRAVPTGISRSVAG
VVQVAAEPEPPEGRQRVPHQRRRRRRGLDRGGGRGEQGGAGPAVRGPRER
AEPAE
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mRNA from alignment at H-akashiwo_Contig847:441403..443305+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig847.8.1 ID=mRNA_H-akashiwo_Contig847.8.1|Name=mRNA_H-akashiwo_Contig847.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1903bp|location=Sequence derived from alignment at H-akashiwo_Contig847:441403..443305+ (Heterosigma akashiwo CCMP452)
ATGTTCCCCCCCATCAACGTGCAGACCATCAAGCTGGCCGACTGCCGCCG
GGTGGTGCTCTTCCACTACCTGAAGGTCCCCGGGGGATGACCGTATAATA
CTATAGTGGTGTTTTCGCGAAAGGGCATCTTCAACCCTGTTCAGCACCAA
CTCTTTGGGGGCGAGGGGGGGGGGGCATTTTCTTGCTGTGGAGGTAGATC
CATATATACATGTGCACAAGTGGGCCCTCGGCGGTTGTTTCTACTAGTAG
TGGGCTGGGCCGTTTTGTGTGCTGCCAATGTTCTTTGTCGCAGAGACAAG
CTGGCAAGAGGGATTTGTATCAACTTTGGGGCTCTAAAAACGCTGAGCAA
GCTATAGTGCCTCTTTTTCCTTCTTGTGCGCCGTGTTCTCACCCTGCCAT
TGCCGTTGTCATGTTACCATAATTTTGGGAGGGAGCTGTTGGGTTTAACA
TGATATTTAAACCGTCTTTTACTGTTGCTTTTATTCTGTGGTTTGATTAG
CTCATTCCCTTCCCACCTTTTCCCCTTCCACTCCCTGTATTCCTTCATCT
CGCTCAAACATATAAACAAACCAACACAGACACACATGTCACATCCAAAT
GCGCCTGCCTCCGCCCCTCTCCATCTTTCCCATCTACTTTTATGTTACAT
TTAATCACCATCCATATAAATCTCACTGTGTGTACATCTGTTTCCATAGA
ATGCTCTACTGTACACACTATGGTACTATACAAACATATTTAAGCATATA
CTTCTTTGATAAATAAGTACCTCTATCCAAATATCACTTTAAAGGCAGTT
TTTGCATACCATACATACATAGTCAGTTCTCAGTGGTGTTTCCCAGTCCT
TTTAGGAATGAGCTGGTGTACCATGCCCCCTTTTTGAGGTCCAGCATTCT
ACGTTCTGTTGTTTCCACTAATCTATCAATATTATATTATGCAGTGATTT
GGGAATGTGCGTTATACGTTATATATAGAGCATCATACTGCATGGATAAT
TAATATACTGCTATATATGTATATGCATATATAAGTTTGTACAAATTATT
CCCCTTAGTATAATGATGGTGCTGCTACTTTTCTTTCAGGAGGACCAAAC
CGTGGAAGTGCGGCATTATTCCATTCGTGCTGTGCCAACCGGGATCAGCA
GGAGGTAGTATGCAATGCTTTGATCTGGTGTTGCTTGCTCCACTTTCAGT
GTCAGTTTGGGTCTCTTTTAGTGACGACTCTTTAACAGTGCCCAGAAGAT
AAGTTGCGCATCATGCTGTGTCCGCGCGCTCTGGCGGAAGAGCTGCACAG
CTCGAAGTCCTCCCCCCTCCTGATGAAAAAGAAGAAGCACGTCTCTGCAC
TCCTCCGTGCGATCATAAGGATCTAAAAGCCACTCTCCCAGCACTTCCCG
TTGCCGTCGCCGCCCTCCTTCCTTCCCCCATCCCCCAACACGCCGCCCAG
CGTGGCCGGGGTGGTGCAGGTGGCTGCCGAACCTGAGCCGCCTGAGGGAC
GTCAGCGAGTTCCTCACCAGCGCCGCCGCCGCCGGTGAGGGTGTAGTCCA
TGCACAAAGCTAGGTGTGTTCCGCCGCGCTCGTGCACTGCGGGCGGGCCA
TCGGCACTGCGGGGCGGCCGGGGCGACGAGAGGCACTGGCGGCCCCAGCC
TTGCTCTTCCTTCTTGCCCGTGGTGCTTGCCGGGCTGGTGGGGTAAGGAA
GGAAGCAGCTACGAAATACACAGCACTAACTATACTACTACGACGACCTC
AATATCAAATACCGTTCCATGATGAGAGGCTCCGCGGCCATGTTTGGGCG
GGGGGGGGCGAGGCGCGGCCTCGACCGAgGGGGAGGACGAGGAGAGCAAG
GTGGAGCTGGCCCAGCGGTACGCGGGCCGCGGGAACGTGCAGAGCCAGCA
GAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig847:441403..443305+

>mRNA_H-akashiwo_Contig847.8.1 ID=mRNA_H-akashiwo_Contig847.8.1|Name=mRNA_H-akashiwo_Contig847.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=315bp|location=Sequence derived from alignment at H-akashiwo_Contig847:441403..443305+ (Heterosigma akashiwo CCMP452)
ATGTTCCCCCCCATCAACGTGCAGACCATCAAGCTGGCCGACTGCCGCCG
GGTGGTGCTCTTCCACTACCTGAAGGAGGACCAAACCGTGGAAGTGCGGC
ATTATTCCATTCGTGCTGTGCCAACCGGGATCAGCAGGAGCGTGGCCGGG
GTGGTGCAGGTGGCTGCCGAACCTGAGCCGCCTGAGGGACGTCAGCGAGT
TCCTCACCAGCGCCGCCGCCGCCGGCGCGGCCTCGACCGAgGGGGAGGAC
GAGGAGAGCAAGGTGGAGCTGGCCCAGCGGTACGCGGGCCGCGGGAACGT
GCAGAGCCAGCAGAG
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