mRNA_H-akashiwo_Contig847.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig847.5.1
Unique NamemRNA_H-akashiwo_Contig847.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig847.5.1 vs. uniprot
Match: A0A7S3XVY0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVY0_HETAK)

HSP 1 Score: 82.8 bits (203), Expect = 3.110e-17
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 3 
Query:    3 KSVKKAKELKELQKNSERRKVENRKRHSKPGSIQERPEKKQAVVTEEK 146
            KSVKKAKELKELQKNSERRKVENRKRHSKPGSIQERPEKKQAVVTEEK
Sbjct:  348 KSVKKAKELKELQKNSERRKVENRKRHSKPGSIQERPEKKQAVVTEEK 395
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig847.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XVY0_HETAK3.110e-17100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig847contigH-akashiwo_Contig847:405883..408806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size178
Hectar predicted targeting categoryother localisation
Exons2
Cds size177
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388009.9824386-CDS-H-akashiwo_Contig847:405882..4059971681388009.9824386-CDS-H-akashiwo_Contig847:405882..405997Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig847 405883..405997 -
1681388009.992816-CDS-H-akashiwo_Contig847:408744..4088061681388009.992816-CDS-H-akashiwo_Contig847:408744..408806Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig847 408745..408806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig847.5.1prot_H-akashiwo_Contig847.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig847 405883..408806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig847.5.1

>prot_H-akashiwo_Contig847.5.1 ID=prot_H-akashiwo_Contig847.5.1|Name=mRNA_H-akashiwo_Contig847.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=59bp
PSLSRKPRSSKNYKRTQSGGRLRTERDIASLVRYKNALKRNRLWLRKKSS
PVILLLLLL
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mRNA from alignment at H-akashiwo_Contig847:405883..408806-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig847.5.1 ID=mRNA_H-akashiwo_Contig847.5.1|Name=mRNA_H-akashiwo_Contig847.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2924bp|location=Sequence derived from alignment at H-akashiwo_Contig847:405883..408806- (Heterosigma akashiwo CCMP452)
CCAAGTCTGTCAAGAAAGCCAAGGAGCTCAAAGAATTACAAAAGAACTCA
GAGCGGAGGAAGGTGCCCTTTATATCCTCAAAGTTCTGCCCCCCCCCCCC
CCCCCCCCCCACCCCCACTCACACTTCACACTTTTCTTCGTCACACTTGT
TCTTTCTTTTTGGTAAAGAAAATACAGCAGTTTCTCTCTCCTTTTTTTCT
TTTGAGAATCGTGTTTCTCTGTGTTTTGGTTGGAGCCAGGTTACCCTACT
GACTGCAGTCTATTTTATGTTCCAGTTCTTATAGGATTTGAGGGTGCCTC
TAGTACAAGCTAATGGCTCAATGCCATATAATAAGAAGGGGCAAGGCCAG
TGAATTTGAAGCTCTAGTCATGGTGTCTTTCTTTCATGATGATAAATCTA
CTGCTCATGAGGCCGGTTCGTGGAAAGTTACTATCCATAAGCTTGTATAA
TGGGCTAGGCAGGAGCACCTCGTGCTCCGACATGAGGGGTGGATTGCATT
CAGTCTTGTGATACCATCCCGACCTGCAGAAAGGAGCAGATGCACTCGCC
AATGGATGTGGGTTGTCGGAAGAAGCATCTATGGCAGAGATCACAGGGCA
ATAGAACATATAGGGCTTCGCGTGGCTGGGACTCCTGGGTCAGTCAGTAT
CGATGCAATGATCAACGAGGTGTTCAGATGTCAAGGCGGCCTGCAAGTAG
ACAGCGGTTGTGGCTCAGGTATGAGTGGAGCACATTGCAAGTAGTTAGGA
ACGTTAAAAAAAAAAAAAAAGCCACAATGAAATCATGTGGACAAATCAGT
GAATAAAACAAAGGACCATTATCACAGTCTAGTCTGTTAAAGGTTACGAC
ATTTCGGGTTTCTCCTTCATCAGGTAAGATCATCACAAAGCTATCTCAGA
AGAAATCTCATCTCCGAAGAAACGAGAAAAGGGACTTGTAAGAGCATCAG
CAGCAACACCTCCTAACTAGTAAAAAGAAAGAAAGAAAAAAAATTGTTCG
AAGAAATATACCCAATCAAAGCACCAGAGCAAAAAATCAACGAATAAAAA
AAAAACATTTAAAGCGGTTGAAACCACTCATCATCCGAGAATGGCAACTG
CATGTTGAAAAAAAGAGCGTTAAGACCACTTGGTACCCAGGCCAGCACTC
CTTGAACACAATGGAACATGCTCCTTCTTTTTTGTGCTGCTGGCCACCCT
TCTTCTTCTTCTTGCTGACCACACTCCTTTGTGCCGAGTCAGAAGACAGG
CACACTCTTTCTTGTGCCCTCAACCAACGGGAAGAGAGCTATAGTTACAA
CTTCTTCTCCGAGCTTAGAAGAAGTCGAAGCAGAGAATATGTCGCCAACC
AAGATGGTTGCCAACTAGGGATGAAGCCGTGACTGCTAAGCAACAAGTCA
TGCTGCTGGCCACTGCATGCCGATGCTGCATGACTGGCCGTTGCCAGATA
CTAGTAATCTCTAGCTCCACCACACAGGATAGATAAGCACAGCTGCATTA
GTTGGATAAGGAATCCCCACTACTGGGCAAATCTGAAACTGTGTGAAAGA
AAGCTGCAGCAGAGATAGAAAAAAGAACTCCGCTAAAAATTTACTCCGCC
AAAGGATAGAATCCATCAGAGTTGAAGGTAACAAGTGTCATAGATCACCA
AAGTTCCTGCTCGAGTAAAACCCAACAAAACCGAGTATAGTGTATAACAT
TATAGCTTGATGATAGCAAATTATTAGAAGAGCCACACCAAATGCCAAAG
AGGGTTAAAGCCAGAACCCACCTGAGAGCAAGTGGAAGACCAAGGTTGCT
TTTCTGAAAAGAAAGAACACTGGTCTGTCGTTGAGGCCAAGGTTTCAAAA
TAAATGAGAATCGTATATATACTTACATGTATATACATGACGCTAGGGTT
GCTTTGGAGTTATAGCAAATCCACCCATCATCAGGAAAGCTATCACAACC
GAACCGCATCGTACTGACGAGTGTTGAGAGCGGAGCAATGGTAGACTTAA
TTCCAGAAAGTGCTCAGATGTCAACGTAGCCTGCAAATAGAGGGTGGTTG
TGTGGTTCAGGATGTGAAGGAACGCATTGCAAGTAGAACGTATACAAAAA
AAAGAGAATTAAAAAAATAGATTACCAAGAAGAAGAAATAAAAACTGATC
ACGTGAAAGCTTCCAGAAGGAACAAAGCACACACACACACACATATATAT
ATATATCCAACTCTTTTGTTTGGGGCCATCATGCATCCCACTCTCTTCTA
GCCTTCATCTTCACCGCGGCTCTCTGCTAACGTGCTGACGCAGCGTTCTT
GACCGTGTTGCAATCTTACAATAAACAAAAACATCATCTTCCCCCCCCCC
CCCCCATGTTTTTTTTTTTGCCTTTGAAGCTCTCATATCCTGCCAGGCTT
GTTCACTCCAACTTTGCGTGCGTAAAAAAGGTAAAATCTCTTACAACTTC
ATTATTATTGTCAACGATACGACAACTGTCGCTCAACATTGCTGGCGATT
GCTGAACACCTCTAGTCTTGGCCTGCTGCATTTCGAAGTTCCTCTTGATT
TTTTGGGCATCATCTTACATTCCTCTTTTCAAGCCTTCATCTTCACGGCT
CTCTCATCTTGGACCTTCAGTTTTGATGGCCGGCATCATCTCCTTCTCCT
CCACGCCAGTTTCCAGGAAGTTCATCATGCGCGTTTTGGTGTGTAGATAT
TGATAACTCTTCACACAACAACCAACAACCAAATATAAAAAAGTGCTTCT
CTATGTCACTGTCATCATGAGAGCTATTAAAAAAAATGATGATTCCTCTT
TATCATCAGGTTGAGAACAGAAAGAGACATAGCAAGCCTGGTTCGATACA
AGAACGCCCTGAAAAGAAACAGGCTGTGGTTACGGAAGAAAAGTAGTCCT
GTGATTTTACTGCTGCTGCTGCTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig847:405883..408806-

>mRNA_H-akashiwo_Contig847.5.1 ID=mRNA_H-akashiwo_Contig847.5.1|Name=mRNA_H-akashiwo_Contig847.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=177bp|location=Sequence derived from alignment at H-akashiwo_Contig847:405883..408806- (Heterosigma akashiwo CCMP452)
CCAAGTCTGTCAAGAAAGCCAAGGAGCTCAAAGAATTACAAAAGAACTCA
GAGCGGAGGAAGGTTGAGAACAGAAAGAGACATAGCAAGCCTGGTTCGAT
ACAAGAACGCCCTGAAAAGAAACAGGCTGTGGTTACGGAAGAAAAGTAGT
CCTGTGATTTTACTGCTGCTGCTGCTG
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