mRNA_H-akashiwo_Contig846.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig846.5.1
Unique NamemRNA_H-akashiwo_Contig846.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 140 bits (353), Expect = 2.260e-34
Identity = 82/232 (35.34%), Postives = 120/232 (51.72%), Query Frame = 1
Query:   28 LMDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            L+++   D+ GPF + S+ GNRY L  I  + +S  CWIY LK KS+A    +     +   Q G Y    R+DRGGE+ +   + F    GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ +R P  K   ++T  E  W  +KP V H + FGC+ Y  +    RK+++ +  K I +GY E  KAY   L +  TKK I+SRDV F
Sbjct:  389 LLEIVHTDIAGPFDIPSLGGNRYYLTFI--DDFSRKCWIYILKEKSEAL-EKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPT-KSVKYMTPNEA-WSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAY--RLYNPLTKKIIISRDVEF 613          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: UPI0016589FE9 (uncharacterized protein LOC118514016 isoform X1 n=1 Tax=Anopheles stephensi TaxID=30069 RepID=UPI0016589FE9)

HSP 1 Score: 139 bits (350), Expect = 5.770e-34
Identity = 84/241 (34.85%), Postives = 136/241 (56.43%), Query Frame = 1
Query:    4 IKEDRQVCLMDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLP-AHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            + E     ++D+  +D+ GP    ++ G RY +   LI+ +S Y ++Y LK KS+   N +    +L+ NQ G  P   R+D+GGE+++  L+ F +++GI  E   A +P+ N   ERK   L  M    L  + + K +W  +   A Y+ +RLP A  D+   T FE+ W  KKPD++++R FGCVGY  + S  RK+++ KA +   VGY+ + KAY ++ T  +T +  +SRDV F
Sbjct:  460 VAEKTSTEVLDIIHSDVCGPMEETTLGGCRYYMT--LIDDHSRYTFVYFLKKKSEVE-NKIREYVKLVQNQFGRKPRIIRSDQGGEYFSKALRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPSAAVDR---TPFEI-WFGKKPDLTNLRLFGCVGYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNT--KTGEIQISRDVRF 691          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY)

HSP 1 Score: 139 bits (350), Expect = 6.020e-34
Identity = 81/231 (35.06%), Postives = 120/231 (51.95%), Query Frame = 1
Query:   31 MDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            +++   D+ GPF + S+ GNRY L  I  + +S  CWIY LK KS+A    +     +   Q G Y    R+DRGGE+ +   + F    GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ +R P  K   ++T  E  W  +KP V H++ FGC+ Y  +    RK+++ +  K I +GY E  KAY   L +  TKK I+SRDV F
Sbjct: 1311 LEIVHTDIAGPFDIPSLGGNRYYLTFI--DDFSRKCWIYILKEKSEAL-EKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPT-KSVKYMTPNEA-WSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAY--RLYNPLTKKIIISRDVEF 1534          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY)

HSP 1 Score: 137 bits (346), Expect = 2.030e-33
Identity = 81/225 (36.00%), Postives = 117/225 (52.00%), Query Frame = 1
Query:   49 DLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            D+ GPF + S+ GNRY L  I  + +S  CWIY LK KS+A    +     +   Q G Y    R+DRGGE+ +   + F    GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ +R P  K   ++T  E  W  +KP V H++ FGC+ Y  +    RK+++ +  K I +GY E  KAY   L +  TKK I+SRDV F
Sbjct:  291 DIAGPFDIPSLGGNRYYLTFI--DDFSRKCWIYILKEKSEAL-EKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPT-KSVKYMTPNEA-WSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAY--RLYNPLTKKIIISRDVEF 508          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: Q8WSJ0_ANOGA (Polyprotein (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WSJ0_ANOGA)

HSP 1 Score: 135 bits (341), Expect = 7.810e-33
Identity = 81/232 (34.91%), Postives = 132/232 (56.90%), Query Frame = 1
Query:   28 LMDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            ++D+  +D+ GP    ++ G RY +   LI+ +S Y ++Y LK KS+A  + +    +L+ NQ G  P   R+D+GGE+ N  L+ F +++GI  E   A +P+ N   ERK   L  M    L  + + K +W  +   A Y+ +RLP+   +   T FE+ W  +KPD++++R F CVGY  + S  RK+++ KA +   VGY+ + KAY ++ T  QT +  +SRDV F
Sbjct:  338 VLDIIHSDVCGPMEETTLGGCRYYMT--LIDDHSRYTFVYFLKKKSEAE-DKIHEYVKLVQNQFGRKPRIIRSDQGGEYSNKALRKFCADEGIKMEFTAAYSPQQNGVAERKNRSLTEMGRCMLRDAGMHKRFWAEAVNTACYLQNRLPSAAVER--TPFEI-WFGRKPDLTNLRLFXCVGYVLIPSVKRKKLDVKAERMTFVGYSGEHKAYRMLNT--QTGEIRISRDVRF 561          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A182GNT8_AEDAL (Uncharacterized protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GNT8_AEDAL)

HSP 1 Score: 133 bits (334), Expect = 6.240e-32
Identity = 77/232 (33.19%), Postives = 125/232 (53.88%), Query Frame = 1
Query:   28 LMDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            ++DL   DL GP    + +GNR+++ +I  + +S Y  +Y L  KS+A  + +M     +    G  P   R+D GGE+ N+ LQSF   +GI AE   A TP+ N   ER+  +L+ MA A L  + L K YW  + + A ++ +RLP+       T FE  W  +KP++++++ FGC  +  +  + R + + KA K   +GY+E  K Y  +    +T+K  +SRD  F
Sbjct:  471 VLDLVHTDLCGPMRTPTPSGNRFLMTVI--DDHSRYAVVYLLAKKSEAP-DKLMEYVRYVETLFGRKPKVVRSDSGGEYCNERLQSFFVREGIKAEYTTAYTPQQNGVAERRNRYLQEMATAMLIDAKLEKKYWGEAVMAAAHLQNRLPSRSVS--CTPFEK-WFGRKPNLNYLKVFGCKAWVHVPDSKRGKFDSKARKMTFIGYSEQHKGYRFV--DLETEKVTISRDAKF 694          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A182G7X1_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G7X1_AEDAL)

HSP 1 Score: 133 bits (334), Expect = 7.460e-32
Identity = 77/232 (33.19%), Postives = 125/232 (53.88%), Query Frame = 1
Query:   28 LMDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            ++DL   DL GP    + +GNR+++ +I  + +S Y  +Y L  KS+A  + +M     +    G  P   R+D GGE+ N+ LQSF   +GI AE   A TP+ N   ER+  +L+ MA A L  + L K YW  + + A ++ +RLP+       T FE  W  +KP++++++ FGC  +  +  + R + + KA K   +GY+E  K Y  +    +T+K  +SRD  F
Sbjct:  108 VLDLVHTDLCGPMRTPTPSGNRFLMTVI--DDHSRYAVVYLLAKKSEAP-DKLMEYVRYVETLFGRKPKVVRSDSGGEYCNERLQSFFVREGIKAEYTTAYTPQQNGVAERRNRYLQEMATAMLIDAKLEKKYWGEAVMAAAHLQNRLPSRSVS--CTPFEK-WFGRKPNLNYLKVFGCKAWVHVPDSKRGKFDSKARKMTFIGYSEQHKGYRFV--DLETEKVTISRDAKF 331          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA)

HSP 1 Score: 133 bits (334), Expect = 7.920e-32
Identity = 77/231 (33.33%), Postives = 118/231 (51.08%), Query Frame = 1
Query:   31 MDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            +++   D++GP+ + S+ GNRY L  I  + YS  CW+Y LK KS+A          ++  Q G Y    R+DRGGE+     +SF  + GII +     TP+ N   ERK   +  MA + +    L + +W  +   AVY+ ++ P    +      E  W   KP V H++ FGC+ Y  +    RK+++ +  K I +GY +  KAY   L +  TKK I+SRDV F
Sbjct:  544 LEIVHTDISGPYDIESLGGNRYYLTFI--DDYSRKCWVYFLKAKSEAL-EKFKEFKAMVEKQSGRYLKILRSDRGGEYTAKLYESFCKDHGIIHQLTARRTPQQNGVAERKNRTILDMARSMIKGKHLPRTFWAEAVECAVYLLNQCPTKSVRHKTP--EEAWSGHKPRVGHLKIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAY--RLYNPLTKKLIISRDVEF 767          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A6V7M0T8_9HYME (Uncharacterized protein n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M0T8_9HYME)

HSP 1 Score: 132 bits (333), Expect = 1.060e-31
Identity = 81/232 (34.91%), Postives = 122/232 (52.59%), Query Frame = 1
Query:   31 MDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAH-KDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            ++L   DL GP   ++V G RY++ II  + +S Y ++Y L  KSQ     +      +  Q G  P  FR+DRGGEF + +L  FL+ +G+  +     TPE N   ERK   L       L  + L   YW  + + A YV + LP   +DK   T FEL + +KKPD+SH+R +GC  Y  +    R +++ K  + I VGY+++ KAY ++     T K + SRD+ F
Sbjct:  374 LELLHMDLCGPMPTKTVGGRRYLMTII--DDFSRYTFVYLLTEKSQ-DERVIRDFIAEMKTQYGEKPKCFRSDRGGEFMSHDLMQFLAKQGVKVQRTAPYTPEQNGVAERKNRTLVEATRTMLIDAGLADQYWGEAVMTAGYVQNLLPTRVRDK---TPFELFF-DKKPDISHLRVYGCKAYAHIPKQMRLKLDNKTRECIFVGYSQESKAYRLL--EENTGKILTSRDIKF 596          
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Match: A0A438JVJ0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JVJ0_VITVI)

HSP 1 Score: 132 bits (331), Expect = 1.970e-31
Identity = 80/237 (33.76%), Postives = 127/237 (53.59%), Query Frame = 1
Query:   13 DRQVCLMDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATANNVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPASTPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAHKDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAIMVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF 723
            +R   L+DL  +DL     + +  GNRY L  I  +  S + +++ LKNKS+ T N        + NQLG      R+DRGGE+++ E  SF    GII E     TP++N   ERK      M NA L  + L    W  + + A Y+ +R+P  K++  ++ ++L WK +KP++ + + +GC+ YC  +  N+ ++ P+A+K   VGYA + KAY ++   S     I SR+V F
Sbjct:  491 ERSSNLLDLIHSDLCELNGMLTRGGNRYFLTFI--DDCSRFTYVFLLKNKSE-TFNAFKVYKAEVENQLGKNIKVLRSDRGGEYFSSEFNSFCEEYGIIHECTAPYTPQHNGIAERKNRTFLEMVNAMLLHAKLNFNLWGEALLTACYILNRIPMKKNE--ISPYDL-WKGRKPNIGYFKVWGCLAYCKKTDPNKTKLGPRAIKCAFVGYASNSKAYRLLDLESNV--IIESREVEF 719          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig846.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A2WSU7_HIBSY2.260e-3435.34Integrase catalytic domain-containing protein n=2 ... [more]
UPI0016589FE95.770e-3434.85uncharacterized protein LOC118514016 isoform X1 n=... [more]
A0A6A2WXP0_HIBSY6.020e-3435.06Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=10... [more]
A0A6A3ACL1_HIBSY2.030e-3336.00Putative cyclic nucleotide-gated ion channel 8 n=1... [more]
Q8WSJ0_ANOGA7.810e-3334.91Polyprotein (Fragment) n=1 Tax=Anopheles gambiae T... [more]
A0A182GNT8_AEDAL6.240e-3233.19Uncharacterized protein n=2 Tax=Aedes albopictus T... [more]
A0A182G7X1_AEDAL7.460e-3233.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A068B703_GOSBA7.920e-3233.33Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A... [more]
A0A6V7M0T8_9HYME1.060e-3134.91Uncharacterized protein n=1 Tax=Bracon brevicornis... [more]
A0A438JVJ0_VITVI1.970e-3133.76Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig846contigH-akashiwo_Contig846:183706..184428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3659.XP_004149950.1
PFAMsPPR,PPR_2
Model size723
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
Exons1
Evalue2.12e-31
EggNOG OGsCOG2801@1|root,KOG4197@1|root,KOG0017@2759|Eukaryota,KOG4197@2759|Eukaryota,37K71@33090|Viridiplantae,3GFIF@35493|Streptophyta,4JGHT@91835|fabids
DescriptionPentatricopeptide repeat-containing protein
Cds size693
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388009.6426163-UTR-H-akashiwo_Contig846:183705..1837351681388009.6426163-UTR-H-akashiwo_Contig846:183705..183735Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig846 183706..183735 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388009.6534855-CDS-H-akashiwo_Contig846:183735..1844281681388009.6534855-CDS-H-akashiwo_Contig846:183735..184428Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig846 183736..184428 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig846.5.1prot_H-akashiwo_Contig846.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig846 183736..184428 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig846.5.1

>prot_H-akashiwo_Contig846.5.1 ID=prot_H-akashiwo_Contig846.5.1|Name=mRNA_H-akashiwo_Contig846.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=231bp
MDLTSADLTGPFYVRSVTGNRYVLIIILIEHYSDYCWIYPLKNKSQATAN
NVMTLFELLHNQLGTYPNKFRTDRGGEFYNDELQSFLSNKGIIAESGPAS
TPEYNMKQERKQLFLETMANAQLDASPLTKGYWDLSWVVAVYVSSRLPAH
KDKGFLTRFELLWKNKKPDVSHMRPFGCVGYCALSSANRKEMNPKAVKAI
MVGYAEDRKAYLIMLTSSQTKKFIVSRDVTF
back to top

mRNA from alignment at H-akashiwo_Contig846:183706..184428+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig846.5.1 ID=mRNA_H-akashiwo_Contig846.5.1|Name=mRNA_H-akashiwo_Contig846.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=723bp|location=Sequence derived from alignment at H-akashiwo_Contig846:183706..184428+ (Heterosigma akashiwo CCMP452)
AAAATTAAAGAAGACAGGCAAGTGTGTTTAATGGATCTCACATCTGCAGA TCTCACTGGTCCTTTTTATGTCAGATCAGTTACTGGAAATAGATATGTTC TTATTATAATACTCATAGAACATTATTCTGATTATTGTTGGATCTATCCT CTCAAAAATAAGTCTCAAGCAACAGCCAACAATGTTATGACTTTATTTGA ACTATTGCACAATCAGTTGGGTACTTACCCTAATAAGTTCAGAACAGATA GAGGAGGGGAGTTTTATAATGATGAGCTTCAATCATTTTTATCCAACAAA GGAATTATTGCTGAATCAGGTCCTGCAAGTACTCCTGAGTACAACATGAA ACAGGAGCGTAAACAGCTTTTCTTGGAAACTATGGCAAATGCACAGTTGG ATGCATCTCCACTCACCAAAGGTTACTGGGACTTGAGTTGGGTTGTAGCT GTCTATGTTTCCAGCAGACTACCAGCTCATAAAGACAAAGGGTTTCTCAC CAGGTTTGAGTTATTATGGAAGAATAAAAAACCTGATGTGTCACACATGA GGCCTTTTGGCTGTGTAGGGTACTGTGCTTTGTCATCAGCAAATAGAAAG GAAATGAATCCAAAAGCTGTTAAAGCCATTATGGTTGGTTATGCAGAAGA TAGGAAAGCCTATCTAATAATGCTTACTTCTTCTCAGACTAAAAAGTTCA TTGTGTCCAGAGATGTGACTTTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig846:183706..184428+

>mRNA_H-akashiwo_Contig846.5.1 ID=mRNA_H-akashiwo_Contig846.5.1|Name=mRNA_H-akashiwo_Contig846.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=693bp|location=Sequence derived from alignment at H-akashiwo_Contig846:183706..184428+ (Heterosigma akashiwo CCMP452)
ATGGATCTCACATCTGCAGATCTCACTGGTCCTTTTTATGTCAGATCAGT
TACTGGAAATAGATATGTTCTTATTATAATACTCATAGAACATTATTCTG
ATTATTGTTGGATCTATCCTCTCAAAAATAAGTCTCAAGCAACAGCCAAC
AATGTTATGACTTTATTTGAACTATTGCACAATCAGTTGGGTACTTACCC
TAATAAGTTCAGAACAGATAGAGGAGGGGAGTTTTATAATGATGAGCTTC
AATCATTTTTATCCAACAAAGGAATTATTGCTGAATCAGGTCCTGCAAGT
ACTCCTGAGTACAACATGAAACAGGAGCGTAAACAGCTTTTCTTGGAAAC
TATGGCAAATGCACAGTTGGATGCATCTCCACTCACCAAAGGTTACTGGG
ACTTGAGTTGGGTTGTAGCTGTCTATGTTTCCAGCAGACTACCAGCTCAT
AAAGACAAAGGGTTTCTCACCAGGTTTGAGTTATTATGGAAGAATAAAAA
ACCTGATGTGTCACACATGAGGCCTTTTGGCTGTGTAGGGTACTGTGCTT
TGTCATCAGCAAATAGAAAGGAAATGAATCCAAAAGCTGTTAAAGCCATT
ATGGTTGGTTATGCAGAAGATAGGAAAGCCTATCTAATAATGCTTACTTC
TTCTCAGACTAAAAAGTTCATTGTGTCCAGAGATGTGACTTTT
back to top